Wall clock time and date at job start Tue Mar 31 2020 18:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46896 * 109.47408 * 2 1 4 4 C 1.46910 * 110.99641 * 63.47653 * 3 2 1 5 5 C 1.50697 * 109.46919 * 66.05237 * 4 3 2 6 6 C 1.38292 * 119.93781 * 89.99999 * 5 4 3 7 7 C 1.38101 * 120.07331 * 180.02562 * 6 5 4 8 8 C 1.38878 * 119.92973 * 359.97438 * 7 6 5 9 9 O 1.35749 * 120.06950 * 180.02562 * 8 7 6 10 10 C 1.34824 * 117.00007 * 354.15223 * 9 8 7 11 11 H 1.08003 * 120.00052 * 355.16830 * 10 9 8 12 12 C 1.38659 * 120.00339 * 175.16085 * 10 9 8 13 13 N 1.31562 * 119.99349 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00213 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47102 * 60.00298 * 14 12 10 16 16 H 1.48504 * 109.47027 * 179.97438 * 14 12 10 17 17 H 1.48492 * 109.47051 * 300.00021 * 14 12 10 18 18 C 1.38887 * 119.86139 * 0.27143 * 8 7 6 19 19 C 1.38099 * 119.92465 * 359.49482 * 18 8 7 20 20 C 1.46902 * 111.00139 * 299.52418 * 3 2 1 21 21 C 1.52998 * 109.47030 * 287.77604 * 20 3 2 22 22 H 1.08993 * 109.47246 * 54.05706 * 21 20 3 23 23 O 1.42906 * 109.46981 * 294.05869 * 21 20 3 24 24 C 1.53001 * 109.47204 * 174.06066 * 21 20 3 25 25 F 1.39905 * 109.46936 * 59.99987 * 24 21 20 26 26 F 1.39894 * 109.47095 * 179.97438 * 24 21 20 27 27 F 1.39905 * 109.46891 * 300.00080 * 24 21 20 28 28 H 1.09000 * 109.47147 * 306.86286 * 1 2 3 29 29 H 1.09001 * 109.47075 * 66.86568 * 1 2 3 30 30 H 1.08997 * 109.47248 * 186.85889 * 1 2 3 31 31 H 1.09000 * 109.47410 * 240.00263 * 2 1 3 32 32 H 1.08999 * 109.47505 * 120.00284 * 2 1 3 33 33 H 1.08993 * 109.46889 * 306.04445 * 4 3 2 34 34 H 1.08997 * 109.46582 * 186.04730 * 4 3 2 35 35 H 1.08001 * 119.96513 * 359.97438 * 6 5 4 36 36 H 1.08005 * 120.03433 * 179.97438 * 7 6 5 37 37 H 0.97005 * 119.99364 * 179.97438 * 13 12 10 38 38 H 1.07991 * 120.03562 * 179.72480 * 18 8 7 39 39 H 1.08002 * 119.95835 * 180.23135 * 19 18 8 40 40 H 1.08996 * 109.46887 * 47.77888 * 20 3 2 41 41 H 1.09004 * 109.47309 * 167.77265 * 20 3 2 42 42 H 0.96696 * 113.99914 * 300.00258 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6177 2.0854 1.2272 5 6 2.3091 1.4607 2.4115 6 6 3.5422 1.9351 2.8200 7 6 4.1786 1.3643 3.9047 8 6 3.5787 0.3132 4.5857 9 8 4.2015 -0.2496 5.6526 10 6 5.4516 0.1751 5.9258 11 1 5.9421 0.8723 5.2625 12 6 6.1076 -0.2830 7.0582 13 7 5.5102 -1.1325 7.8659 14 14 7.8393 0.3061 7.4370 15 1 7.8361 1.7824 7.5969 16 1 8.3134 -0.3264 8.6942 17 1 8.7448 -0.0691 6.3215 18 6 2.3426 -0.1644 4.1699 19 6 1.7092 0.4139 3.0876 20 6 1.5580 2.1066 -1.1933 21 6 2.3142 1.5970 -2.4219 22 1 2.2134 0.5137 -2.4870 23 8 3.6966 1.9406 -2.3067 24 6 1.7321 2.2401 -3.6822 25 9 1.8616 3.6306 -3.5985 26 9 2.4239 1.7746 -4.8054 27 9 0.3788 1.9037 -3.7948 28 1 -0.3633 0.6165 0.8222 29 1 -0.3633 0.4038 -0.9450 30 1 -0.3633 -1.0203 0.1227 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 0.5380 2.0065 1.3535 34 1 1.8992 3.1359 1.1546 35 1 4.0085 2.7523 2.2897 36 1 5.1419 1.7351 4.2229 37 1 5.9693 -1.4532 8.6579 38 1 1.8756 -0.9846 4.6948 39 1 0.7463 0.0454 2.7661 40 1 0.4896 1.9387 -1.3288 41 1 1.7451 3.1731 -1.0681 42 1 3.8615 2.8914 -2.2442 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275031393.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:20 Heat of formation + Delta-G solvation = -197.367710 kcal Electronic energy + Delta-G solvation = -28848.615326 eV Core-core repulsion = 24186.765073 eV Total energy + Delta-G solvation = -4661.850253 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.50288 -48.03005 -47.96716 -39.57438 -38.67510 -37.20682 -35.95227 -32.37245 -31.30035 -30.95140 -30.06272 -28.91139 -26.09469 -25.37597 -24.71002 -22.98891 -21.96598 -21.07197 -19.93951 -19.00238 -18.86641 -18.57480 -18.01025 -16.94775 -16.54985 -16.17648 -15.80068 -15.08761 -14.81349 -14.71309 -14.58195 -14.51673 -14.44818 -14.40884 -14.12878 -14.11260 -13.99637 -13.57341 -13.44115 -13.35511 -12.96573 -12.68546 -12.48769 -12.28934 -12.04082 -11.85352 -11.59977 -11.43187 -11.20126 -10.96178 -10.87014 -10.71483 -10.63625 -10.47430 -10.42283 -9.36166 -8.83497 -8.36178 -8.16045 -7.18691 -6.45814 -4.04330 2.14826 2.22487 2.34078 3.13358 3.13569 3.17081 3.22078 3.37754 3.56914 3.96492 3.99722 4.10629 4.34856 4.50913 4.64295 4.90251 5.00742 5.10341 5.12685 5.21186 5.23353 5.26653 5.35024 5.40768 5.63643 5.71141 5.79686 5.85943 5.99238 6.13743 6.21452 6.41886 6.68925 6.83552 6.92332 6.93267 7.03010 7.07421 7.24443 7.40195 7.44078 7.82167 7.99321 8.99948 9.69945 10.72144 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.021781 B = 0.002367 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.198318 B =11825.986891 C =12580.032343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.040 3.960 3 N -0.516 5.516 4 C 0.111 3.889 5 C -0.180 4.180 6 C -0.047 4.047 7 C -0.235 4.235 8 C 0.156 3.844 9 O -0.178 6.178 10 C -0.391 4.391 11 H 0.092 0.908 12 C 0.039 3.961 13 N -0.863 5.863 14 Si 0.941 3.059 15 H -0.270 1.270 16 H -0.278 1.278 17 H -0.269 1.269 18 C -0.195 4.195 19 C -0.068 4.068 20 C 0.013 3.987 21 C 0.080 3.920 22 H 0.140 0.860 23 O -0.514 6.514 24 C 0.418 3.582 25 F -0.184 7.184 26 F -0.177 7.177 27 F -0.181 7.181 28 H 0.062 0.938 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.094 0.906 33 H 0.040 0.960 34 H 0.073 0.927 35 H 0.106 0.894 36 H 0.126 0.874 37 H 0.270 0.730 38 H 0.115 0.885 39 H 0.107 0.893 40 H 0.061 0.939 41 H 0.088 0.912 42 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.170 7.060 -20.365 23.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.087 4.087 3 N -0.238 5.238 4 C -0.015 4.015 5 C -0.182 4.182 6 C -0.066 4.066 7 C -0.254 4.254 8 C 0.102 3.898 9 O -0.081 6.081 10 C -0.467 4.467 11 H 0.109 0.891 12 C -0.165 4.165 13 N -0.498 5.498 14 Si 0.765 3.235 15 H -0.195 1.195 16 H -0.203 1.203 17 H -0.194 1.194 18 C -0.214 4.214 19 C -0.087 4.087 20 C -0.116 4.116 21 C 0.018 3.982 22 H 0.158 0.842 23 O -0.319 6.319 24 C 0.363 3.637 25 F -0.166 7.166 26 F -0.158 7.158 27 F -0.163 7.163 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.112 0.888 33 H 0.058 0.942 34 H 0.091 0.909 35 H 0.125 0.875 36 H 0.144 0.856 37 H 0.080 0.920 38 H 0.133 0.867 39 H 0.125 0.875 40 H 0.079 0.921 41 H 0.107 0.893 42 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -8.589 6.125 -20.031 22.639 hybrid contribution -0.234 1.050 -0.076 1.078 sum -8.823 7.175 -20.107 23.100 Atomic orbital electron populations 1.22476 0.98464 1.02823 1.01781 1.22301 0.92536 0.90113 1.03784 1.62187 1.59139 1.02113 1.00407 1.20870 0.96825 0.96898 0.86954 1.18968 0.97720 1.02012 0.99455 1.20547 0.93445 0.97846 0.94768 1.21162 1.02948 1.01037 1.00283 1.19410 0.91654 0.90746 0.87973 1.83983 1.28578 1.56337 1.39169 1.21281 0.87728 1.28482 1.09254 0.89107 1.25291 1.00094 0.96292 0.94827 1.70034 1.37773 1.28978 1.13005 0.85785 0.80411 0.78976 0.78307 1.19502 1.20294 1.19441 1.20161 0.95899 1.04447 1.00891 1.20480 0.98179 0.95276 0.94727 1.22810 0.98113 0.99753 0.90939 1.23167 0.84251 1.02257 0.88534 0.84244 1.86765 1.19944 1.30032 1.95164 1.21845 0.76565 0.77205 0.88133 1.93177 1.95564 1.31362 1.96473 1.93214 1.79097 1.88295 1.55187 1.93190 1.34372 1.92101 1.96621 0.91865 0.92836 0.91744 0.91178 0.88796 0.94186 0.90874 0.87550 0.85639 0.91964 0.86690 0.87489 0.92059 0.89320 0.76808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.76 9.10 37.15 0.34 -1.43 16 2 C 0.04 0.43 5.56 -3.83 -0.02 0.41 16 3 N -0.52 -5.67 4.62 -236.08 -1.09 -6.76 16 4 C 0.11 1.33 4.93 -4.97 -0.02 1.30 16 5 C -0.18 -2.85 4.89 -104.58 -0.51 -3.37 16 6 C -0.05 -0.84 9.69 -39.61 -0.38 -1.22 16 7 C -0.23 -5.00 9.14 -39.39 -0.36 -5.36 16 8 C 0.16 3.70 6.65 -39.10 -0.26 3.44 16 9 O -0.18 -5.02 9.76 0.07 0.00 -5.02 16 10 C -0.39 -10.86 9.45 30.89 0.29 -10.57 16 11 H 0.09 2.33 5.29 -52.48 -0.28 2.05 16 12 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 13 N -0.86 -25.20 13.67 55.48 0.76 -24.44 16 14 Si 0.94 20.41 29.55 -169.99 -5.02 15.39 16 15 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 16 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 17 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 18 C -0.19 -3.98 9.99 -39.39 -0.39 -4.37 16 19 C -0.07 -1.13 7.90 -39.61 -0.31 -1.44 16 20 C 0.01 0.11 4.21 -3.82 -0.02 0.09 16 21 C 0.08 0.66 3.03 -26.73 -0.08 0.58 16 22 H 0.14 1.13 6.56 -51.93 -0.34 0.79 16 23 O -0.51 -4.85 13.24 -35.23 -0.47 -5.32 16 24 C 0.42 3.51 2.85 37.16 0.11 3.62 16 25 F -0.18 -1.55 16.53 2.25 0.04 -1.51 16 26 F -0.18 -1.73 17.26 2.25 0.04 -1.69 16 27 F -0.18 -1.59 16.70 2.25 0.04 -1.55 16 28 H 0.06 0.60 5.73 -51.93 -0.30 0.30 16 29 H 0.05 0.43 6.53 -51.93 -0.34 0.09 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.69 6.59 -51.93 -0.34 0.34 16 32 H 0.09 1.23 5.92 -51.93 -0.31 0.92 16 33 H 0.04 0.45 5.93 -51.93 -0.31 0.14 16 34 H 0.07 0.81 7.80 -51.93 -0.41 0.41 16 35 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 36 H 0.13 2.70 5.71 -52.48 -0.30 2.40 16 37 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 38 H 0.12 2.29 8.06 -52.49 -0.42 1.86 16 39 H 0.11 1.49 7.52 -52.49 -0.39 1.10 16 40 H 0.06 0.48 5.40 -51.93 -0.28 0.20 16 41 H 0.09 0.67 7.63 -51.93 -0.40 0.27 16 42 H 0.38 2.42 8.69 45.56 0.40 2.81 16 LS Contribution 353.39 15.07 5.33 5.33 Total: -1.00 -30.90 353.39 -6.10 -37.00 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -4.00 Total: 5.91 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: -1.73 Total: -17.33 kcal Atomic # 7 Polarization: -30.87 SS G_CDS: -0.33 Total: -31.20 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: -0.47 Total: -10.34 kcal Atomic # 9 Polarization: -4.87 SS G_CDS: 0.11 Total: -4.75 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.90 -6.10 -37.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275031393.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -160.369 kcal (2) G-P(sol) polarization free energy of solvation -30.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds