Wall clock time and date at job start Tue Mar 31 2020 18:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46896 * 109.47408 * 2 1 4 4 C 1.46910 * 110.99641 * 63.47653 * 3 2 1 5 5 C 1.50697 * 109.46919 * 66.05237 * 4 3 2 6 6 C 1.38292 * 119.93781 * 89.99999 * 5 4 3 7 7 C 1.38101 * 120.07331 * 180.02562 * 6 5 4 8 8 C 1.38878 * 119.92973 * 359.97438 * 7 6 5 9 9 O 1.35749 * 120.06950 * 180.02562 * 8 7 6 10 10 C 1.34824 * 117.00007 * 354.15223 * 9 8 7 11 11 H 1.08003 * 120.00052 * 355.16830 * 10 9 8 12 12 C 1.38659 * 120.00339 * 175.16085 * 10 9 8 13 13 N 1.31562 * 119.99349 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00213 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47102 * 60.00298 * 14 12 10 16 16 H 1.48504 * 109.47027 * 179.97438 * 14 12 10 17 17 H 1.48492 * 109.47051 * 300.00021 * 14 12 10 18 18 C 1.38887 * 119.86139 * 0.27143 * 8 7 6 19 19 C 1.38099 * 119.92465 * 359.49482 * 18 8 7 20 20 C 1.46902 * 111.00139 * 299.52418 * 3 2 1 21 21 C 1.52998 * 109.47030 * 287.77604 * 20 3 2 22 22 H 1.08993 * 109.47246 * 54.05706 * 21 20 3 23 23 O 1.42906 * 109.46981 * 294.05869 * 21 20 3 24 24 C 1.53001 * 109.47204 * 174.06066 * 21 20 3 25 25 F 1.39905 * 109.46936 * 59.99987 * 24 21 20 26 26 F 1.39894 * 109.47095 * 179.97438 * 24 21 20 27 27 F 1.39905 * 109.46891 * 300.00080 * 24 21 20 28 28 H 1.09000 * 109.47147 * 306.86286 * 1 2 3 29 29 H 1.09001 * 109.47075 * 66.86568 * 1 2 3 30 30 H 1.08997 * 109.47248 * 186.85889 * 1 2 3 31 31 H 1.09000 * 109.47410 * 240.00263 * 2 1 3 32 32 H 1.08999 * 109.47505 * 120.00284 * 2 1 3 33 33 H 1.08993 * 109.46889 * 306.04445 * 4 3 2 34 34 H 1.08997 * 109.46582 * 186.04730 * 4 3 2 35 35 H 1.08001 * 119.96513 * 359.97438 * 6 5 4 36 36 H 1.08005 * 120.03433 * 179.97438 * 7 6 5 37 37 H 0.97005 * 119.99364 * 179.97438 * 13 12 10 38 38 H 1.07991 * 120.03562 * 179.72480 * 18 8 7 39 39 H 1.08002 * 119.95835 * 180.23135 * 19 18 8 40 40 H 1.08996 * 109.46887 * 47.77888 * 20 3 2 41 41 H 1.09004 * 109.47309 * 167.77265 * 20 3 2 42 42 H 0.96696 * 113.99914 * 300.00258 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6177 2.0854 1.2272 5 6 2.3091 1.4607 2.4115 6 6 3.5422 1.9351 2.8200 7 6 4.1786 1.3643 3.9047 8 6 3.5787 0.3132 4.5857 9 8 4.2015 -0.2496 5.6526 10 6 5.4516 0.1751 5.9258 11 1 5.9421 0.8723 5.2625 12 6 6.1076 -0.2830 7.0582 13 7 5.5102 -1.1325 7.8659 14 14 7.8393 0.3061 7.4370 15 1 7.8361 1.7824 7.5969 16 1 8.3134 -0.3264 8.6942 17 1 8.7448 -0.0691 6.3215 18 6 2.3426 -0.1644 4.1699 19 6 1.7092 0.4139 3.0876 20 6 1.5580 2.1066 -1.1933 21 6 2.3142 1.5970 -2.4219 22 1 2.2134 0.5137 -2.4870 23 8 3.6966 1.9406 -2.3067 24 6 1.7321 2.2401 -3.6822 25 9 1.8616 3.6306 -3.5985 26 9 2.4239 1.7746 -4.8054 27 9 0.3788 1.9037 -3.7948 28 1 -0.3633 0.6165 0.8222 29 1 -0.3633 0.4038 -0.9450 30 1 -0.3633 -1.0203 0.1227 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 0.5380 2.0065 1.3535 34 1 1.8992 3.1359 1.1546 35 1 4.0085 2.7523 2.2897 36 1 5.1419 1.7351 4.2229 37 1 5.9693 -1.4532 8.6579 38 1 1.8756 -0.9846 4.6948 39 1 0.7463 0.0454 2.7661 40 1 0.4896 1.9387 -1.3288 41 1 1.7451 3.1731 -1.0681 42 1 3.8615 2.8914 -2.2442 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275031393.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:19 Heat of formation + Delta-G solvation = -219.470828 kcal Electronic energy + Delta-G solvation = -28849.573789 eV Core-core repulsion = 24186.765073 eV Total energy + Delta-G solvation = -4662.808716 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.134 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -51.16989 -48.68052 -48.66154 -40.91523 -39.88010 -38.37990 -37.15733 -34.30649 -32.28497 -32.04152 -31.46539 -29.96378 -27.60459 -26.59725 -25.76145 -23.83291 -23.54540 -22.27216 -20.99865 -19.83901 -19.66128 -19.56036 -19.24247 -18.76719 -17.30801 -16.94124 -16.74189 -16.36823 -16.06595 -15.93287 -15.80822 -15.49299 -15.44136 -15.24244 -15.09091 -15.05359 -14.80994 -14.80373 -14.56469 -14.51888 -14.25283 -13.87616 -13.69465 -13.56073 -13.00186 -12.95495 -12.78369 -12.70933 -12.42773 -12.22929 -12.19057 -12.11226 -11.95403 -11.61857 -11.35687 -11.15256 -10.76461 -9.71284 -9.21082 -8.83541 -8.45797 -6.13404 0.64720 0.71534 1.35768 1.46159 1.51832 1.59014 2.19236 2.50021 2.74102 2.84829 2.92548 3.14091 3.37534 3.50617 3.54711 3.70214 3.88970 4.00118 4.09531 4.22027 4.28680 4.32001 4.45679 4.53977 4.61450 4.62337 4.66548 4.70250 4.85974 5.05356 5.10582 5.16960 5.19444 5.34032 5.40439 5.60641 5.76166 5.84888 6.04949 6.07370 6.12867 6.28956 6.50510 6.99309 7.81219 8.77468 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.021781 B = 0.002367 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.198318 B =11825.986891 C =12580.032343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.038 3.962 3 N -0.528 5.528 4 C 0.112 3.888 5 C -0.150 4.150 6 C -0.048 4.048 7 C -0.245 4.245 8 C 0.113 3.887 9 O -0.234 6.234 10 C -0.412 4.412 11 H 0.100 0.900 12 C -0.023 4.023 13 N -0.922 5.922 14 Si 1.017 2.983 15 H -0.257 1.257 16 H -0.272 1.272 17 H -0.258 1.258 18 C -0.207 4.207 19 C -0.057 4.057 20 C 0.017 3.983 21 C 0.087 3.913 22 H 0.141 0.859 23 O -0.532 6.532 24 C 0.423 3.577 25 F -0.183 7.183 26 F -0.186 7.186 27 F -0.182 7.182 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.059 0.941 34 H 0.093 0.907 35 H 0.137 0.863 36 H 0.115 0.885 37 H 0.272 0.728 38 H 0.109 0.891 39 H 0.142 0.858 40 H 0.074 0.926 41 H 0.103 0.897 42 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.138 9.091 -23.228 26.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.090 4.090 3 N -0.251 5.251 4 C -0.014 4.014 5 C -0.151 4.151 6 C -0.067 4.067 7 C -0.264 4.264 8 C 0.063 3.937 9 O -0.141 6.141 10 C -0.488 4.488 11 H 0.117 0.883 12 C -0.221 4.221 13 N -0.560 5.560 14 Si 0.836 3.164 15 H -0.181 1.181 16 H -0.196 1.196 17 H -0.182 1.182 18 C -0.226 4.226 19 C -0.075 4.075 20 C -0.112 4.112 21 C 0.024 3.976 22 H 0.158 0.842 23 O -0.339 6.339 24 C 0.368 3.632 25 F -0.165 7.165 26 F -0.168 7.168 27 F -0.164 7.164 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.096 0.904 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.111 0.889 35 H 0.155 0.845 36 H 0.132 0.868 37 H 0.081 0.919 38 H 0.128 0.872 39 H 0.160 0.840 40 H 0.092 0.908 41 H 0.121 0.879 42 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -9.592 8.192 -22.957 26.194 hybrid contribution -0.193 0.514 0.463 0.718 sum -9.786 8.706 -22.494 26.030 Atomic orbital electron populations 1.22416 0.96843 1.03252 1.02458 1.22280 0.93872 0.89904 1.02935 1.62040 1.59909 1.02307 1.00829 1.20890 0.97384 0.97518 0.85640 1.19522 0.96371 0.99806 0.99414 1.20902 0.93997 0.98251 0.93530 1.21256 1.02879 1.00902 1.01402 1.19960 0.93175 0.92448 0.88119 1.83940 1.29336 1.58942 1.41882 1.21752 0.88418 1.28758 1.09880 0.88283 1.26572 1.04847 0.96307 0.94329 1.70183 1.40143 1.31582 1.14131 0.84669 0.74394 0.78943 0.78365 1.18096 1.19645 1.18249 1.20422 0.95268 1.04791 1.02138 1.20849 0.99109 0.94677 0.92855 1.22835 0.98660 1.00170 0.89502 1.23115 0.83800 1.02317 0.88345 0.84172 1.86740 1.20600 1.31411 1.95173 1.21812 0.76365 0.77163 0.87825 1.93182 1.95549 1.31294 1.96436 1.93198 1.79349 1.88445 1.55762 1.93191 1.34428 1.92118 1.96614 0.91992 0.91458 0.91354 0.90391 0.91452 0.92300 0.88898 0.84481 0.86758 0.91882 0.87237 0.83990 0.90838 0.87860 0.75372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.67 9.10 71.98 0.65 -2.01 16 2 C 0.04 0.69 5.56 86.30 0.48 1.17 16 3 N -0.53 -9.45 4.62 -900.81 -4.16 -13.61 16 4 C 0.11 2.16 4.93 85.55 0.42 2.58 16 5 C -0.15 -4.29 4.89 -19.84 -0.10 -4.39 16 6 C -0.05 -1.61 9.69 22.25 0.22 -1.39 16 7 C -0.25 -10.61 9.14 22.39 0.20 -10.40 16 8 C 0.11 5.62 6.65 22.58 0.15 5.77 16 9 O -0.23 -14.20 9.76 -22.67 -0.22 -14.42 16 10 C -0.41 -24.19 9.45 67.92 0.64 -23.55 16 11 H 0.10 5.35 5.29 -2.91 -0.02 5.34 16 12 C -0.02 -1.33 5.49 84.83 0.47 -0.87 16 13 N -0.92 -57.01 13.67 21.62 0.30 -56.72 16 14 Si 1.02 43.12 29.55 68.60 2.03 45.15 16 15 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 16 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 17 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 18 C -0.21 -8.64 9.99 22.39 0.22 -8.41 16 19 C -0.06 -1.77 7.90 22.25 0.18 -1.60 16 20 C 0.02 0.21 4.21 86.30 0.36 0.57 16 21 C 0.09 1.15 3.03 30.59 0.09 1.24 16 22 H 0.14 1.84 6.56 -2.39 -0.02 1.83 16 23 O -0.53 -8.53 13.24 -148.98 -1.97 -10.50 16 24 C 0.42 5.89 2.85 71.98 0.21 6.10 16 25 F -0.18 -2.52 16.53 44.97 0.74 -1.78 16 26 F -0.19 -3.25 17.26 44.97 0.78 -2.47 16 27 F -0.18 -2.62 16.70 44.97 0.75 -1.87 16 28 H 0.06 0.89 5.73 -2.39 -0.01 0.87 16 29 H 0.07 0.77 6.53 -2.39 -0.02 0.76 16 30 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.08 1.30 6.59 -2.39 -0.02 1.29 16 32 H 0.07 1.59 5.92 -2.39 -0.01 1.58 16 33 H 0.06 0.98 5.93 -2.39 -0.01 0.97 16 34 H 0.09 1.52 7.80 -2.39 -0.02 1.50 16 35 H 0.14 3.73 8.06 -2.91 -0.02 3.71 16 36 H 0.11 5.10 5.71 -2.91 -0.02 5.09 16 37 H 0.27 15.44 8.31 -92.70 -0.77 14.67 16 38 H 0.11 4.57 8.06 -2.92 -0.02 4.55 16 39 H 0.14 3.47 7.52 -2.91 -0.02 3.45 16 40 H 0.07 0.79 5.40 -2.39 -0.01 0.77 16 41 H 0.10 1.03 7.63 -2.38 -0.02 1.01 16 42 H 0.40 3.79 8.69 -74.06 -0.64 3.15 16 Total: -1.00 -72.33 353.39 2.89 -69.45 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: 0.45 Total: 21.97 kcal Atomic # 6 Polarization: -39.39 SS G_CDS: 4.20 Total: -35.19 kcal Atomic # 7 Polarization: -66.47 SS G_CDS: -3.86 Total: -70.33 kcal Atomic # 8 Polarization: -22.72 SS G_CDS: -2.19 Total: -24.92 kcal Atomic # 9 Polarization: -8.39 SS G_CDS: 2.27 Total: -6.12 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -72.33 2.89 -69.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275031393.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.025 kcal (2) G-P(sol) polarization free energy of solvation -72.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -222.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds