Wall clock time and date at job start Tue Mar 31 2020 18:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42896 * 114.00169 * 2 1 4 4 C 1.52993 * 109.47700 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47299 * 64.99785 * 4 3 2 6 6 C 1.46500 * 119.99665 * 275.28436 * 5 4 3 7 7 C 1.50704 * 109.47072 * 275.03623 * 6 5 4 8 8 H 1.08001 * 119.99611 * 5.08529 * 7 6 5 9 9 C 1.37877 * 119.99930 * 185.08382 * 7 6 5 10 10 N 1.31518 * 119.99695 * 180.02562 * 9 7 6 11 11 Si 1.86792 * 120.00320 * 359.97438 * 9 7 6 12 12 H 1.48502 * 109.46898 * 90.00025 * 11 9 7 13 13 H 1.48498 * 109.47570 * 210.00296 * 11 9 7 14 14 H 1.48506 * 109.47103 * 330.00407 * 11 9 7 15 15 S 1.65591 * 120.00027 * 95.00394 * 5 4 3 16 16 O 1.42100 * 106.40314 * 209.24352 * 15 5 4 17 17 O 1.42107 * 106.40266 * 342.15795 * 15 5 4 18 18 N 1.65597 * 107.21990 * 95.69935 * 15 5 4 19 19 C 1.46496 * 119.99926 * 295.95739 * 18 15 5 20 20 H 1.09003 * 109.47245 * 23.95420 * 19 18 15 21 21 C 1.52999 * 109.47256 * 263.95179 * 19 18 15 22 22 C 1.50702 * 109.47161 * 143.95307 * 19 18 15 23 23 N 1.33239 * 125.52507 * 44.69328 * 22 19 18 24 24 C 1.30839 * 109.82769 * 179.85558 * 23 22 19 25 25 N 1.34424 * 108.07555 * 0.40277 * 24 23 22 26 26 H 0.97002 * 126.81963 * 179.78994 * 25 24 23 27 27 N 1.30714 * 125.52826 * 224.99838 * 22 19 18 28 28 H 1.09001 * 109.46789 * 300.00123 * 1 2 3 29 29 H 1.09001 * 109.46842 * 59.99629 * 1 2 3 30 30 H 1.09000 * 109.47201 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47359 * 59.99931 * 3 2 1 32 32 H 1.09009 * 109.47271 * 300.00671 * 3 2 1 33 33 H 1.08999 * 109.46750 * 305.00145 * 4 3 2 34 34 H 1.08998 * 109.47915 * 185.00239 * 4 3 2 35 35 H 1.08999 * 109.48030 * 35.03955 * 6 5 4 36 36 H 1.09001 * 109.46985 * 155.04236 * 6 5 4 37 37 H 0.97001 * 119.99831 * 179.97438 * 10 9 7 38 38 H 0.96998 * 120.00133 * 115.95818 * 18 15 5 39 39 H 1.08997 * 109.47055 * 65.00921 * 21 19 18 40 40 H 1.09002 * 109.47050 * 185.00812 * 21 19 18 41 41 H 1.08998 * 109.47552 * 305.00771 * 21 19 18 42 42 H 1.08000 * 125.95849 * 180.19227 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9758 0.5644 -1.2527 6 6 3.9946 -0.8949 -1.3802 7 6 5.2899 -1.4307 -0.8267 8 1 5.9894 -0.7625 -0.3466 9 6 5.5818 -2.7740 -0.9332 10 7 6.7119 -3.2417 -0.4498 11 14 4.3715 -3.9299 -1.7629 12 1 4.6732 -4.0032 -3.2152 13 1 4.4895 -5.2836 -1.1639 14 1 2.9896 -3.4218 -1.5695 15 16 4.4454 1.5130 -2.5262 16 8 4.1504 0.7767 -3.7052 17 8 3.9283 2.8118 -2.2713 18 7 6.0948 1.6445 -2.4574 19 6 6.7294 2.3122 -1.3183 20 1 6.0622 2.2743 -0.4571 21 6 7.0162 3.7715 -1.6775 22 6 8.0222 1.6139 -0.9832 23 7 8.9393 1.2180 -1.8649 24 6 9.9387 0.6493 -1.2406 25 7 9.6701 0.6635 0.0764 26 1 10.2272 0.3094 0.7872 27 7 8.4230 1.2935 0.2190 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6887 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8514 0.5683 0.8409 34 1 3.9786 2.1765 0.0890 35 1 3.1587 -1.3192 -0.8240 36 1 3.9079 -1.1689 -2.4316 37 1 6.9171 -4.1868 -0.5244 38 1 6.6406 1.2795 -3.1713 39 1 6.0752 4.2990 -1.8331 40 1 7.5676 4.2441 -0.8646 41 1 7.6101 3.8110 -2.5905 42 1 10.8233 0.2372 -1.7031 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281859955.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:04 Heat of formation + Delta-G solvation = -26.053283 kcal Electronic energy + Delta-G solvation = -28720.960360 eV Core-core repulsion = 24672.591957 eV Total energy + Delta-G solvation = -4048.368403 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.130 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.78476 -37.81914 -36.79040 -36.04486 -35.41081 -35.25528 -32.44951 -31.93115 -31.01803 -29.76729 -29.14988 -27.15370 -25.76413 -23.84081 -22.65239 -22.46417 -21.58263 -19.99775 -18.84396 -18.12900 -17.36035 -17.01206 -16.67209 -16.09933 -15.83528 -15.50661 -15.18010 -14.90524 -14.79420 -14.46431 -14.06462 -13.69749 -13.49466 -13.24013 -12.52266 -12.44094 -12.29071 -12.18854 -11.99658 -11.83380 -11.77576 -11.53763 -11.43470 -11.32161 -11.12561 -11.11211 -10.86974 -10.65022 -10.29339 -10.13556 -9.80664 -9.78797 -9.50608 -9.41609 -9.35395 -9.19682 -8.53007 -8.03468 -6.06208 -4.03300 1.23790 1.94012 2.93574 3.13036 3.34157 3.40724 3.47637 3.55932 4.05980 4.10187 4.31277 4.45800 4.81232 4.92866 5.17812 5.27566 5.29782 5.34569 5.37991 5.46101 5.51659 5.58811 5.63970 5.65462 5.75453 5.86073 5.93454 6.21275 6.28279 6.38716 6.48485 6.50777 6.66922 7.07529 7.23391 7.30067 7.39532 7.52435 7.56497 7.69581 8.36422 8.52081 9.00269 9.56640 11.06436 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.009684 B = 0.006508 C = 0.004708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2890.639627 B = 4301.208436 C = 5945.511800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.374 6.374 3 C 0.044 3.956 4 C 0.131 3.869 5 N -0.980 5.980 6 C 0.217 3.783 7 C -0.529 4.529 8 H 0.079 0.921 9 C 0.075 3.925 10 N -0.898 5.898 11 Si 0.866 3.134 12 H -0.274 1.274 13 H -0.287 1.287 14 H -0.260 1.260 15 S 2.786 3.214 16 O -0.980 6.980 17 O -0.996 6.996 18 N -1.108 6.108 19 C 0.261 3.739 20 H 0.098 0.902 21 C -0.163 4.163 22 C 0.231 3.769 23 N -0.533 5.533 24 C 0.262 3.738 25 N -0.478 5.478 26 H 0.440 0.560 27 N -0.297 5.297 28 H 0.036 0.964 29 H 0.036 0.964 30 H 0.082 0.918 31 H 0.054 0.946 32 H 0.049 0.951 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.054 0.946 36 H 0.036 0.964 37 H 0.261 0.739 38 H 0.422 0.578 39 H 0.079 0.921 40 H 0.064 0.936 41 H 0.069 0.931 42 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.267 10.921 1.813 11.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.292 6.292 3 C -0.035 4.035 4 C 0.004 3.996 5 N -0.820 5.820 6 C 0.094 3.906 7 C -0.569 4.569 8 H 0.098 0.902 9 C -0.127 4.127 10 N -0.537 5.537 11 Si 0.693 3.307 12 H -0.200 1.200 13 H -0.213 1.213 14 H -0.185 1.185 15 S 2.794 3.206 16 O -0.964 6.964 17 O -0.979 6.979 18 N -0.867 5.867 19 C 0.150 3.850 20 H 0.116 0.884 21 C -0.223 4.223 22 C -0.054 4.054 23 N -0.262 5.262 24 C -0.037 4.037 25 N -0.195 5.195 26 H 0.285 0.715 27 N -0.126 5.126 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.100 0.900 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.112 0.888 34 H 0.103 0.897 35 H 0.072 0.928 36 H 0.054 0.946 37 H 0.071 0.929 38 H 0.257 0.743 39 H 0.098 0.902 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 0.317 11.254 1.573 11.368 hybrid contribution 0.505 -1.572 0.042 1.652 sum 0.822 9.682 1.615 9.850 Atomic orbital electron populations 1.22711 0.82278 1.02386 0.99321 1.88064 1.18543 1.27387 1.95204 1.23109 0.95290 0.84998 1.00057 1.21189 0.91372 0.98138 0.88895 1.57428 1.78841 1.18439 1.27331 1.19630 0.98888 0.74306 0.97790 1.21477 1.02937 0.94205 1.38232 0.90248 1.24804 0.94945 0.97986 0.94978 1.69904 1.23266 1.14140 1.46360 0.86987 0.82955 0.80521 0.80243 1.20006 1.21345 1.18454 1.01762 0.72673 0.72859 0.73348 1.93582 1.83072 1.72960 1.46813 1.93546 1.78512 1.39705 1.86170 1.55913 1.27140 1.72642 1.30998 1.18587 0.87444 0.90169 0.88843 0.88376 1.22289 1.03378 0.94014 1.02615 1.24055 0.97022 0.97847 0.86479 1.70204 1.02360 1.19199 1.34393 1.25927 0.99166 0.96577 0.82012 1.47982 1.16561 1.46189 1.08790 0.71518 1.77953 0.95421 1.17041 1.22232 0.94572 0.94519 0.89976 0.92802 0.93277 0.88811 0.89697 0.92835 0.94624 0.92947 0.74306 0.90224 0.91688 0.91237 0.76560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.51 16 2 O -0.37 -6.56 9.00 -35.23 -0.32 -6.88 16 3 C 0.04 0.69 6.28 37.15 0.23 0.92 16 4 C 0.13 2.24 5.56 -4.04 -0.02 2.22 16 5 N -0.98 -20.06 2.81 -115.66 -0.33 -20.39 16 6 C 0.22 5.26 4.35 -5.19 -0.02 5.24 16 7 C -0.53 -14.44 9.94 -34.44 -0.34 -14.78 16 8 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 9 C 0.08 2.13 5.47 -17.82 -0.10 2.04 16 10 N -0.90 -26.69 13.96 55.43 0.77 -25.92 16 11 Si 0.87 21.76 27.37 -169.99 -4.65 17.11 16 12 H -0.27 -6.91 7.11 56.52 0.40 -6.51 16 13 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 14 H -0.26 -6.34 6.69 56.52 0.38 -5.96 16 15 S 2.79 54.99 6.00 -107.50 -0.65 54.35 16 16 O -0.98 -22.54 16.81 -57.17 -0.96 -23.50 16 17 O -1.00 -18.96 16.40 -57.17 -0.94 -19.90 16 18 N -1.11 -19.88 5.51 -5.88 -0.03 -19.91 16 19 C 0.26 4.26 3.36 -69.08 -0.23 4.03 16 20 H 0.10 1.56 6.86 -51.93 -0.36 1.21 16 21 C -0.16 -2.16 9.50 37.16 0.35 -1.81 16 22 C 0.23 4.06 6.97 -156.85 -1.09 2.97 16 23 N -0.53 -8.95 10.92 -11.98 -0.13 -9.08 16 24 C 0.26 3.51 13.13 -90.65 -1.19 2.32 16 25 N -0.48 -6.63 7.45 29.53 0.22 -6.41 16 26 H 0.44 4.45 8.96 -182.33 -1.63 2.81 16 27 N -0.30 -5.25 12.80 32.42 0.41 -4.83 16 28 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.77 8.14 -51.92 -0.42 0.35 16 33 H 0.09 1.67 8.11 -51.93 -0.42 1.25 16 34 H 0.08 1.23 6.61 -51.93 -0.34 0.88 16 35 H 0.05 1.32 5.99 -51.93 -0.31 1.01 16 36 H 0.04 0.91 6.13 -51.93 -0.32 0.60 16 37 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 38 H 0.42 7.56 8.62 -34.47 -0.30 7.26 16 39 H 0.08 1.03 7.84 -51.93 -0.41 0.62 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.22 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 366.05 15.07 5.52 5.52 Total: -1.00 -37.06 366.05 -9.43 -46.49 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -7.05 Total: 8.69 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: -1.30 Total: 4.65 kcal Atomic # 7 Polarization: -87.46 SS G_CDS: 0.92 Total: -86.54 kcal Atomic # 8 Polarization: -48.06 SS G_CDS: -2.22 Total: -50.28 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.65 Total: 17.11 kcal Atomic # 16 Polarization: 54.99 SS G_CDS: -0.65 Total: 54.35 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -37.06 -9.43 -46.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281859955.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.442 kcal (2) G-P(sol) polarization free energy of solvation -37.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds