Wall clock time and date at job start Tue Mar 31 2020 18:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42896 * 114.00169 * 2 1 4 4 C 1.52993 * 109.47700 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47299 * 64.99785 * 4 3 2 6 6 C 1.46500 * 119.99665 * 275.28436 * 5 4 3 7 7 C 1.50704 * 109.47072 * 275.03623 * 6 5 4 8 8 H 1.08001 * 119.99611 * 5.08529 * 7 6 5 9 9 C 1.37877 * 119.99930 * 185.08382 * 7 6 5 10 10 N 1.31518 * 119.99695 * 180.02562 * 9 7 6 11 11 Si 1.86792 * 120.00320 * 359.97438 * 9 7 6 12 12 H 1.48502 * 109.46898 * 90.00025 * 11 9 7 13 13 H 1.48498 * 109.47570 * 210.00296 * 11 9 7 14 14 H 1.48506 * 109.47103 * 330.00407 * 11 9 7 15 15 S 1.65591 * 120.00027 * 95.00394 * 5 4 3 16 16 O 1.42100 * 106.40314 * 209.24352 * 15 5 4 17 17 O 1.42107 * 106.40266 * 342.15795 * 15 5 4 18 18 N 1.65597 * 107.21990 * 95.69935 * 15 5 4 19 19 C 1.46496 * 119.99926 * 295.95739 * 18 15 5 20 20 H 1.09003 * 109.47245 * 23.95420 * 19 18 15 21 21 C 1.52999 * 109.47256 * 263.95179 * 19 18 15 22 22 C 1.50702 * 109.47161 * 143.95307 * 19 18 15 23 23 N 1.33239 * 125.52507 * 44.69328 * 22 19 18 24 24 C 1.30839 * 109.82769 * 179.85558 * 23 22 19 25 25 N 1.34424 * 108.07555 * 0.40277 * 24 23 22 26 26 H 0.97002 * 126.81963 * 179.78994 * 25 24 23 27 27 N 1.30714 * 125.52826 * 224.99838 * 22 19 18 28 28 H 1.09001 * 109.46789 * 300.00123 * 1 2 3 29 29 H 1.09001 * 109.46842 * 59.99629 * 1 2 3 30 30 H 1.09000 * 109.47201 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47359 * 59.99931 * 3 2 1 32 32 H 1.09009 * 109.47271 * 300.00671 * 3 2 1 33 33 H 1.08999 * 109.46750 * 305.00145 * 4 3 2 34 34 H 1.08998 * 109.47915 * 185.00239 * 4 3 2 35 35 H 1.08999 * 109.48030 * 35.03955 * 6 5 4 36 36 H 1.09001 * 109.46985 * 155.04236 * 6 5 4 37 37 H 0.97001 * 119.99831 * 179.97438 * 10 9 7 38 38 H 0.96998 * 120.00133 * 115.95818 * 18 15 5 39 39 H 1.08997 * 109.47055 * 65.00921 * 21 19 18 40 40 H 1.09002 * 109.47050 * 185.00812 * 21 19 18 41 41 H 1.08998 * 109.47552 * 305.00771 * 21 19 18 42 42 H 1.08000 * 125.95849 * 180.19227 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9758 0.5644 -1.2527 6 6 3.9946 -0.8949 -1.3802 7 6 5.2899 -1.4307 -0.8267 8 1 5.9894 -0.7625 -0.3466 9 6 5.5818 -2.7740 -0.9332 10 7 6.7119 -3.2417 -0.4498 11 14 4.3715 -3.9299 -1.7629 12 1 4.6732 -4.0032 -3.2152 13 1 4.4895 -5.2836 -1.1639 14 1 2.9896 -3.4218 -1.5695 15 16 4.4454 1.5130 -2.5262 16 8 4.1504 0.7767 -3.7052 17 8 3.9283 2.8118 -2.2713 18 7 6.0948 1.6445 -2.4574 19 6 6.7294 2.3122 -1.3183 20 1 6.0622 2.2743 -0.4571 21 6 7.0162 3.7715 -1.6775 22 6 8.0222 1.6139 -0.9832 23 7 8.9393 1.2180 -1.8649 24 6 9.9387 0.6493 -1.2406 25 7 9.6701 0.6635 0.0764 26 1 10.2272 0.3094 0.7872 27 7 8.4230 1.2935 0.2190 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6887 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8514 0.5683 0.8409 34 1 3.9786 2.1765 0.0890 35 1 3.1587 -1.3192 -0.8240 36 1 3.9079 -1.1689 -2.4316 37 1 6.9171 -4.1868 -0.5244 38 1 6.6406 1.2795 -3.1713 39 1 6.0752 4.2990 -1.8331 40 1 7.5676 4.2441 -0.8646 41 1 7.6101 3.8110 -2.5905 42 1 10.8233 0.2372 -1.7031 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281859955.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:03 Heat of formation + Delta-G solvation = -56.224035 kcal Electronic energy + Delta-G solvation = -28722.268662 eV Core-core repulsion = 24672.591957 eV Total energy + Delta-G solvation = -4049.676705 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.130 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.96429 -39.10308 -38.37615 -37.40801 -36.97705 -36.89942 -34.52535 -33.14359 -32.26603 -31.35723 -30.36772 -28.83304 -26.98601 -25.05142 -24.27883 -23.63290 -23.22670 -21.26290 -20.38576 -19.27981 -19.09818 -18.66440 -18.44283 -17.56531 -17.09685 -16.83192 -16.53817 -16.32357 -15.97583 -15.86849 -15.71175 -15.27259 -14.70777 -14.59059 -14.38993 -13.99210 -13.79841 -13.53081 -13.40827 -13.34865 -13.19234 -13.03152 -13.00267 -12.73829 -12.67438 -12.51897 -12.35749 -12.15692 -12.03456 -11.88473 -11.61296 -11.05039 -10.98994 -10.74417 -10.69482 -10.53982 -10.50077 -9.73601 -8.25042 -6.24842 -0.32849 0.77436 1.34444 1.37523 1.47866 1.76280 1.93109 2.14746 2.36600 2.54794 2.96182 3.11187 3.15945 3.39396 3.64832 3.91945 4.06380 4.17153 4.21578 4.28474 4.41350 4.48265 4.50166 4.57269 4.61339 4.78010 4.87215 4.87786 4.97312 5.11224 5.19184 5.24457 5.37116 5.42375 5.45460 5.52943 5.76027 6.07111 6.33448 6.36415 6.38177 6.78949 7.18507 7.37361 8.89870 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.009684 B = 0.006508 C = 0.004708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2890.639627 B = 4301.208436 C = 5945.511800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.410 6.410 3 C 0.044 3.956 4 C 0.121 3.879 5 N -0.985 5.985 6 C 0.231 3.769 7 C -0.520 4.520 8 H 0.052 0.948 9 C 0.024 3.976 10 N -0.934 5.934 11 Si 0.917 3.083 12 H -0.275 1.275 13 H -0.281 1.281 14 H -0.249 1.249 15 S 2.799 3.201 16 O -1.014 7.014 17 O -0.987 6.987 18 N -1.106 6.106 19 C 0.252 3.748 20 H 0.097 0.903 21 C -0.154 4.154 22 C 0.218 3.782 23 N -0.565 5.565 24 C 0.271 3.729 25 N -0.473 5.473 26 H 0.454 0.546 27 N -0.333 5.333 28 H 0.059 0.941 29 H 0.043 0.957 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.048 0.952 33 H 0.082 0.918 34 H 0.111 0.889 35 H 0.052 0.948 36 H 0.023 0.977 37 H 0.262 0.738 38 H 0.421 0.579 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.071 0.929 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.830 11.663 1.932 11.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.330 6.330 3 C -0.034 4.034 4 C -0.004 4.004 5 N -0.825 5.825 6 C 0.106 3.894 7 C -0.559 4.559 8 H 0.071 0.929 9 C -0.175 4.175 10 N -0.575 5.575 11 Si 0.742 3.258 12 H -0.201 1.201 13 H -0.206 1.206 14 H -0.172 1.172 15 S 2.807 3.193 16 O -0.998 6.998 17 O -0.970 6.970 18 N -0.866 5.866 19 C 0.142 3.858 20 H 0.115 0.885 21 C -0.213 4.213 22 C -0.067 4.067 23 N -0.294 5.294 24 C -0.028 4.028 25 N -0.192 5.192 26 H 0.302 0.698 27 N -0.164 5.164 28 H 0.078 0.922 29 H 0.062 0.938 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.066 0.934 33 H 0.100 0.900 34 H 0.129 0.871 35 H 0.070 0.930 36 H 0.041 0.959 37 H 0.071 0.929 38 H 0.256 0.744 39 H 0.102 0.898 40 H 0.100 0.900 41 H 0.090 0.910 42 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -0.128 12.017 1.727 12.141 hybrid contribution 0.733 -1.745 0.069 1.894 sum 0.606 10.272 1.796 10.445 Atomic orbital electron populations 1.22908 0.80252 1.03287 1.00816 1.87996 1.20917 1.28533 1.95513 1.23150 0.93837 0.84801 1.01655 1.21481 0.93082 0.98877 0.86987 1.57372 1.79422 1.16888 1.28805 1.19244 0.97042 0.76574 0.96497 1.21602 1.03432 0.93765 1.37097 0.92943 1.25507 0.96466 0.99640 0.95860 1.70013 1.24916 1.14523 1.47998 0.86165 0.81590 0.78965 0.79115 1.20066 1.20627 1.17235 1.01288 0.72883 0.72626 0.72515 1.93532 1.83934 1.73817 1.48531 1.93548 1.78708 1.38843 1.85946 1.55773 1.26478 1.72813 1.31532 1.18860 0.87192 0.91578 0.88183 0.88468 1.22225 1.03870 0.91896 1.03343 1.24252 0.97577 0.98159 0.86709 1.70193 1.03321 1.20681 1.35202 1.26904 0.99547 0.94686 0.81627 1.47951 1.15735 1.45694 1.09774 0.69769 1.77844 0.97302 1.18378 1.22862 0.92209 0.93825 0.89506 0.89314 0.93378 0.90005 0.87121 0.92975 0.95899 0.92888 0.74383 0.89765 0.90047 0.90953 0.71722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.57 11.01 113.37 1.25 1.82 16 2 O -0.41 -13.83 9.00 -148.98 -1.34 -15.17 16 3 C 0.04 1.28 6.28 71.98 0.45 1.74 16 4 C 0.12 4.04 5.56 86.38 0.48 4.52 16 5 N -0.99 -40.02 2.81 -519.84 -1.46 -41.48 16 6 C 0.23 11.22 4.35 85.63 0.37 11.59 16 7 C -0.52 -28.69 9.94 25.60 0.25 -28.43 16 8 H 0.05 3.14 8.06 -2.91 -0.02 3.12 16 9 C 0.02 1.37 5.47 84.65 0.46 1.83 16 10 N -0.93 -56.10 13.96 21.45 0.30 -55.80 16 11 Si 0.92 44.72 27.37 68.60 1.88 46.59 16 12 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 13 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 14 H -0.25 -11.57 6.69 99.48 0.67 -10.91 16 15 S 2.80 109.30 6.00 -56.49 -0.34 108.96 16 16 O -1.01 -46.68 16.81 -128.00 -2.15 -48.83 16 17 O -0.99 -36.19 16.40 -128.00 -2.10 -38.29 16 18 N -1.11 -39.57 5.51 -172.52 -0.95 -40.52 16 19 C 0.25 8.14 3.36 44.25 0.15 8.28 16 20 H 0.10 3.08 6.86 -2.39 -0.02 3.06 16 21 C -0.15 -3.88 9.50 71.98 0.68 -3.19 16 22 C 0.22 7.63 6.97 138.63 0.97 8.60 16 23 N -0.56 -18.60 10.92 -191.80 -2.09 -20.70 16 24 C 0.27 6.84 13.13 180.36 2.37 9.21 16 25 N -0.47 -12.74 7.45 -60.49 -0.45 -13.19 16 26 H 0.45 8.77 8.96 -213.10 -1.91 6.86 16 27 N -0.33 -11.78 12.80 -51.33 -0.66 -12.44 16 28 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 32 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 33 H 0.08 2.91 8.11 -2.39 -0.02 2.89 16 34 H 0.11 3.03 6.61 -2.39 -0.02 3.02 16 35 H 0.05 2.56 5.99 -2.39 -0.01 2.54 16 36 H 0.02 1.18 6.13 -2.39 -0.01 1.16 16 37 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 38 H 0.42 15.23 8.62 -96.75 -0.83 14.40 16 39 H 0.08 2.03 7.84 -2.39 -0.02 2.01 16 40 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.27 3.49 8.06 -2.91 -0.02 3.47 16 Total: -1.00 -79.79 366.05 -3.65 -83.44 By element: Atomic # 1 Polarization: 33.17 SS G_CDS: -1.72 Total: 31.46 kcal Atomic # 6 Polarization: 8.53 SS G_CDS: 7.44 Total: 15.96 kcal Atomic # 7 Polarization: -178.81 SS G_CDS: -5.32 Total: -184.12 kcal Atomic # 8 Polarization: -96.70 SS G_CDS: -5.59 Total: -102.29 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 1.88 Total: 46.59 kcal Atomic # 16 Polarization: 109.30 SS G_CDS: -0.34 Total: 108.96 kcal Total: -79.79 -3.65 -83.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281859955.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.212 kcal (2) G-P(sol) polarization free energy of solvation -79.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds