Wall clock time and date at job start Tue Mar 31 2020 18:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46496 * 109.46830 * 2 1 4 4 C 1.46500 * 120.00254 * 93.08935 * 3 2 1 5 5 C 1.50699 * 109.47407 * 89.99157 * 4 3 2 6 6 H 1.08003 * 119.99636 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00055 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00008 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99993 * 180.02562 * 7 5 4 10 10 H 1.48490 * 109.47341 * 59.99617 * 9 7 5 11 11 H 1.48503 * 109.46943 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46462 * 299.99664 * 9 7 5 13 13 C 1.34778 * 120.00133 * 273.08347 * 3 2 1 14 14 O 1.21604 * 119.99970 * 185.26384 * 13 3 2 15 15 C 1.47479 * 119.99838 * 5.26279 * 13 3 2 16 16 N 1.31990 * 126.44768 * 5.13556 * 15 13 3 17 17 N 1.28459 * 110.22245 * 179.87410 * 16 15 13 18 18 C 1.40089 * 124.93606 * 180.13306 * 17 16 15 19 19 C 1.38899 * 120.05508 * 0.30325 * 18 17 16 20 20 C 1.38105 * 119.97989 * 179.97438 * 19 18 17 21 21 C 1.38266 * 120.09342 * 359.97438 * 20 19 18 22 22 C 1.38489 * 120.11233 * 359.97438 * 21 20 19 23 23 F 1.35105 * 119.98967 * 180.02562 * 22 21 20 24 24 C 1.38352 * 120.02079 * 359.79223 * 22 21 20 25 25 C 1.36114 * 110.12556 * 0.40089 * 17 16 15 26 26 C 1.35756 * 107.06523 * 359.75711 * 25 17 16 27 27 O 1.36071 * 127.26553 * 180.02562 * 26 25 17 28 28 H 1.09004 * 109.47350 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47598 * 299.99875 * 1 2 3 30 30 H 1.09000 * 109.47404 * 60.00015 * 1 2 3 31 31 H 1.09005 * 109.46721 * 240.00105 * 2 1 3 32 32 H 1.09000 * 109.47404 * 119.99985 * 2 1 3 33 33 H 1.08996 * 109.47540 * 210.00045 * 4 3 2 34 34 H 1.09003 * 109.46538 * 329.99460 * 4 3 2 35 35 H 0.97002 * 120.00153 * 179.97438 * 8 7 5 36 36 H 1.07996 * 120.00731 * 359.97438 * 19 18 17 37 37 H 1.08000 * 119.95015 * 179.97438 * 20 19 18 38 38 H 1.08004 * 119.93867 * 180.02562 * 21 20 19 39 39 H 1.08001 * 120.04987 * 180.25371 * 24 22 21 40 40 H 1.08007 * 126.46359 * 179.74103 * 25 17 16 41 41 H 0.96706 * 113.99857 * 269.97421 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.3268 2.0491 1.2669 5 6 3.7702 1.8051 1.6248 6 1 4.3953 1.2122 0.9735 7 6 4.2928 2.3388 2.7837 8 7 3.5317 3.0612 3.5765 9 14 6.0821 2.0370 3.2271 10 1 6.9559 2.5800 2.1563 11 1 6.3945 2.7129 4.5120 12 1 6.3181 0.5774 3.3660 13 6 2.1836 2.0375 -1.1655 14 8 2.6785 3.1483 -1.1729 15 6 1.7645 1.4085 -2.4319 16 7 1.1319 0.2576 -2.5640 17 7 0.9176 0.0088 -3.8059 18 6 0.2654 -1.1305 -4.2949 19 6 -0.2103 -2.0922 -3.4128 20 6 -0.8535 -3.2145 -3.8966 21 6 -1.0252 -3.3823 -5.2582 22 6 -0.5534 -2.4253 -6.1411 23 9 -0.7231 -2.5915 -7.4711 24 6 0.0873 -1.2969 -5.6614 25 6 1.4214 1.0102 -4.5780 26 6 1.9708 1.9236 -3.7371 27 8 2.5886 3.0878 -4.0752 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8901 32 1 1.8934 -0.5138 0.8900 33 1 2.1539 3.1204 1.1644 34 1 1.6852 1.6511 2.0530 35 1 3.8992 3.4364 4.3921 36 1 -0.0772 -1.9623 -2.3490 37 1 -1.2228 -3.9622 -3.2102 38 1 -1.5289 -4.2607 -5.6338 39 1 0.4518 -0.5483 -6.3493 40 1 1.3903 1.0672 -5.6561 41 1 3.5411 3.0007 -4.2178 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283265860.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:44 Heat of formation + Delta-G solvation = 9.750116 kcal Electronic energy + Delta-G solvation = -28270.343114 eV Core-core repulsion = 24068.163350 eV Total energy + Delta-G solvation = -4202.179764 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.40754 -43.04822 -39.51980 -38.60166 -37.18800 -35.20733 -33.66479 -32.69487 -31.44946 -30.31400 -29.85709 -29.40090 -27.20173 -24.78488 -23.71815 -22.91703 -22.77803 -21.39892 -21.31546 -19.36915 -18.49986 -17.64112 -16.86330 -16.81996 -16.49427 -16.41782 -16.23636 -16.06557 -15.79177 -15.30365 -14.63577 -14.34989 -14.25349 -14.10051 -13.96446 -13.62277 -13.49381 -13.07153 -12.77593 -12.47413 -12.22826 -11.94709 -11.90457 -11.63970 -11.47844 -11.17332 -10.88961 -10.70975 -10.48459 -10.32877 -10.21035 -10.02938 -9.62184 -9.42842 -9.18663 -9.10025 -8.47412 -8.40016 -7.61719 -6.00936 -4.05519 0.22512 0.58568 1.78995 1.91967 2.02515 3.08917 3.34418 3.38606 3.41648 3.61068 3.77558 3.95053 4.03284 4.27643 4.37766 4.43873 4.48751 4.58865 4.68994 4.82247 4.98638 5.12136 5.33241 5.40719 5.47551 5.50987 5.60384 5.69572 5.76453 5.84976 5.93218 6.06953 6.14187 6.29884 6.39223 6.56947 6.76507 7.11458 7.45610 7.56135 7.67823 7.73500 7.95522 8.25925 8.42563 8.91094 9.07882 9.59066 11.07127 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.018471 B = 0.002967 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.533380 B = 9436.315811 C =10238.604755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.109 3.891 3 N -0.580 5.580 4 C 0.248 3.752 5 C -0.525 4.525 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.582 3.418 14 O -0.518 6.518 15 C 0.002 3.998 16 N -0.238 5.238 17 N -0.243 5.243 18 C 0.181 3.819 19 C -0.122 4.122 20 C -0.065 4.065 21 C -0.159 4.159 22 C 0.125 3.875 23 F -0.132 7.132 24 C -0.171 4.171 25 C -0.048 4.048 26 C 0.058 3.942 27 O -0.451 6.451 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.044 0.956 34 H 0.035 0.965 35 H 0.264 0.736 36 H 0.152 0.848 37 H 0.147 0.853 38 H 0.143 0.857 39 H 0.146 0.854 40 H 0.187 0.813 41 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.769 -14.553 -19.257 26.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.015 4.015 3 N -0.311 5.311 4 C 0.129 3.871 5 C -0.564 4.564 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.534 5.534 9 Si 0.726 3.274 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.203 1.203 13 C 0.366 3.634 14 O -0.393 6.393 15 C -0.161 4.161 16 N -0.071 5.071 17 N -0.026 5.026 18 C 0.089 3.911 19 C -0.142 4.142 20 C -0.084 4.084 21 C -0.179 4.179 22 C 0.105 3.895 23 F -0.111 7.111 24 C -0.192 4.192 25 C -0.187 4.187 26 C 0.003 3.997 27 O -0.256 6.256 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.062 0.938 34 H 0.053 0.947 35 H 0.073 0.927 36 H 0.170 0.830 37 H 0.164 0.836 38 H 0.160 0.840 39 H 0.164 0.836 40 H 0.204 0.796 41 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -10.502 -14.462 -18.462 25.696 hybrid contribution 1.739 0.309 -0.548 1.849 sum -8.764 -14.152 -19.010 25.268 Atomic orbital electron populations 1.22112 0.96766 1.00942 1.01802 1.21562 0.93767 0.83570 1.02640 1.48161 1.62247 1.13456 1.07277 1.19335 0.96017 0.93913 0.77851 1.21384 0.95875 1.32804 1.06325 0.92469 1.24924 0.98036 0.94927 0.96161 1.69922 1.36039 1.34258 1.13199 0.86557 0.84978 0.78245 0.77625 1.20166 1.21197 1.20288 1.16776 0.80030 0.85272 0.81365 1.90820 1.43702 1.19180 1.85550 1.23207 1.03393 0.92782 0.96741 1.74060 1.17727 1.16732 0.98610 1.42341 1.40978 1.15020 1.04244 1.17214 0.96109 0.85780 0.91955 1.21147 0.98788 0.93001 1.01246 1.20968 0.96097 0.96734 0.94585 1.21291 1.03060 1.00025 0.93477 1.17206 0.99536 0.95036 0.77772 1.91544 1.93457 1.95405 1.30652 1.20688 1.04822 0.99726 0.93988 1.22858 1.06133 0.90794 0.98937 1.18129 1.02876 0.89148 0.89554 1.84894 1.25732 1.25162 1.89850 0.92664 0.92838 0.92652 0.90351 0.90419 0.93843 0.94660 0.92667 0.83027 0.83574 0.83962 0.83626 0.79585 0.75426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.36 9.68 37.16 0.36 -2.00 16 2 C 0.11 1.92 5.67 -4.04 -0.02 1.90 16 3 N -0.58 -12.99 2.46 -176.31 -0.43 -13.43 16 4 C 0.25 6.60 5.11 -5.19 -0.03 6.57 16 5 C -0.53 -15.06 9.39 -34.44 -0.32 -15.39 16 6 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.90 -26.76 13.29 55.43 0.74 -26.02 16 9 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 C 0.58 13.19 7.64 -12.49 -0.10 13.09 16 14 O -0.52 -13.69 16.17 3.37 0.05 -13.64 16 15 C 0.00 0.04 6.64 -82.66 -0.55 -0.51 16 16 N -0.24 -3.60 6.07 33.46 0.20 -3.40 16 17 N -0.24 -3.03 3.52 -10.41 -0.04 -3.07 16 18 C 0.18 1.79 6.66 -83.63 -0.56 1.23 16 19 C -0.12 -1.04 9.59 -39.39 -0.38 -1.42 16 20 C -0.07 -0.40 10.04 -39.62 -0.40 -0.79 16 21 C -0.16 -0.98 10.02 -39.48 -0.40 -1.37 16 22 C 0.12 0.95 7.30 -39.45 -0.29 0.66 16 23 F -0.13 -1.10 17.27 2.25 0.04 -1.06 16 24 C -0.17 -1.39 9.41 -39.33 -0.37 -1.76 16 25 C -0.05 -0.57 10.81 -16.54 -0.18 -0.75 16 26 C 0.06 0.90 7.35 -39.10 -0.29 0.62 16 27 O -0.45 -6.86 13.21 -21.86 -0.29 -7.15 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.05 0.86 6.56 -51.93 -0.34 0.52 16 31 H 0.08 1.29 5.73 -51.93 -0.30 0.99 16 32 H 0.08 1.39 8.05 -51.93 -0.42 0.97 16 33 H 0.04 1.30 7.50 -51.93 -0.39 0.91 16 34 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 35 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.15 1.34 7.64 -52.49 -0.40 0.94 16 37 H 0.15 0.50 8.06 -52.49 -0.42 0.08 16 38 H 0.14 0.57 8.06 -52.48 -0.42 0.14 16 39 H 0.15 0.95 6.65 -52.49 -0.35 0.60 16 40 H 0.19 1.46 6.96 -52.48 -0.37 1.09 16 41 H 0.39 4.22 9.07 45.56 0.41 4.64 16 LS Contribution 358.35 15.07 5.40 5.40 Total: -1.00 -35.52 358.35 -6.76 -42.28 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -3.80 Total: 1.35 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: -3.61 Total: 1.76 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: 0.47 Total: -45.92 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: -0.23 Total: -20.79 kcal Atomic # 9 Polarization: -1.10 SS G_CDS: 0.04 Total: -1.06 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.52 -6.76 -42.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283265860.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.028 kcal (2) G-P(sol) polarization free energy of solvation -35.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds