Wall clock time and date at job start Tue Mar 31 2020 18:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46496 * 109.46830 * 2 1 4 4 C 1.46500 * 120.00254 * 93.08935 * 3 2 1 5 5 C 1.50699 * 109.47407 * 89.99157 * 4 3 2 6 6 H 1.08003 * 119.99636 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00055 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00008 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99993 * 180.02562 * 7 5 4 10 10 H 1.48490 * 109.47341 * 59.99617 * 9 7 5 11 11 H 1.48503 * 109.46943 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46462 * 299.99664 * 9 7 5 13 13 C 1.34778 * 120.00133 * 273.08347 * 3 2 1 14 14 O 1.21604 * 119.99970 * 185.26384 * 13 3 2 15 15 C 1.47479 * 119.99838 * 5.26279 * 13 3 2 16 16 N 1.31990 * 126.44768 * 5.13556 * 15 13 3 17 17 N 1.28459 * 110.22245 * 179.87410 * 16 15 13 18 18 C 1.40089 * 124.93606 * 180.13306 * 17 16 15 19 19 C 1.38899 * 120.05508 * 0.30325 * 18 17 16 20 20 C 1.38105 * 119.97989 * 179.97438 * 19 18 17 21 21 C 1.38266 * 120.09342 * 359.97438 * 20 19 18 22 22 C 1.38489 * 120.11233 * 359.97438 * 21 20 19 23 23 F 1.35105 * 119.98967 * 180.02562 * 22 21 20 24 24 C 1.38352 * 120.02079 * 359.79223 * 22 21 20 25 25 C 1.36114 * 110.12556 * 0.40089 * 17 16 15 26 26 C 1.35756 * 107.06523 * 359.75711 * 25 17 16 27 27 O 1.36071 * 127.26553 * 180.02562 * 26 25 17 28 28 H 1.09004 * 109.47350 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47598 * 299.99875 * 1 2 3 30 30 H 1.09000 * 109.47404 * 60.00015 * 1 2 3 31 31 H 1.09005 * 109.46721 * 240.00105 * 2 1 3 32 32 H 1.09000 * 109.47404 * 119.99985 * 2 1 3 33 33 H 1.08996 * 109.47540 * 210.00045 * 4 3 2 34 34 H 1.09003 * 109.46538 * 329.99460 * 4 3 2 35 35 H 0.97002 * 120.00153 * 179.97438 * 8 7 5 36 36 H 1.07996 * 120.00731 * 359.97438 * 19 18 17 37 37 H 1.08000 * 119.95015 * 179.97438 * 20 19 18 38 38 H 1.08004 * 119.93867 * 180.02562 * 21 20 19 39 39 H 1.08001 * 120.04987 * 180.25371 * 24 22 21 40 40 H 1.08007 * 126.46359 * 179.74103 * 25 17 16 41 41 H 0.96706 * 113.99857 * 269.97421 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.3268 2.0491 1.2669 5 6 3.7702 1.8051 1.6248 6 1 4.3953 1.2122 0.9735 7 6 4.2928 2.3388 2.7837 8 7 3.5317 3.0612 3.5765 9 14 6.0821 2.0370 3.2271 10 1 6.9559 2.5800 2.1563 11 1 6.3945 2.7129 4.5120 12 1 6.3181 0.5774 3.3660 13 6 2.1836 2.0375 -1.1655 14 8 2.6785 3.1483 -1.1729 15 6 1.7645 1.4085 -2.4319 16 7 1.1319 0.2576 -2.5640 17 7 0.9176 0.0088 -3.8059 18 6 0.2654 -1.1305 -4.2949 19 6 -0.2103 -2.0922 -3.4128 20 6 -0.8535 -3.2145 -3.8966 21 6 -1.0252 -3.3823 -5.2582 22 6 -0.5534 -2.4253 -6.1411 23 9 -0.7231 -2.5915 -7.4711 24 6 0.0873 -1.2969 -5.6614 25 6 1.4214 1.0102 -4.5780 26 6 1.9708 1.9236 -3.7371 27 8 2.5886 3.0878 -4.0752 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8901 32 1 1.8934 -0.5138 0.8900 33 1 2.1539 3.1204 1.1644 34 1 1.6852 1.6511 2.0530 35 1 3.8992 3.4364 4.3921 36 1 -0.0772 -1.9623 -2.3490 37 1 -1.2228 -3.9622 -3.2102 38 1 -1.5289 -4.2607 -5.6338 39 1 0.4518 -0.5483 -6.3493 40 1 1.3903 1.0672 -5.6561 41 1 3.5411 3.0007 -4.2178 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283265860.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:43 Heat of formation + Delta-G solvation = -14.337868 kcal Electronic energy + Delta-G solvation = -28271.387647 eV Core-core repulsion = 24068.163350 eV Total energy + Delta-G solvation = -4203.224297 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.98651 -44.12594 -40.62934 -39.87458 -38.30444 -36.96283 -35.04868 -34.35489 -32.18888 -31.70561 -31.03779 -30.35855 -29.05559 -26.20114 -24.76906 -24.36869 -23.99007 -22.49808 -22.29117 -20.54229 -19.72441 -18.67119 -18.60486 -18.07081 -17.53273 -17.42761 -17.18687 -17.02270 -16.75519 -16.58114 -16.21015 -15.76585 -15.50485 -15.39858 -14.89355 -14.79264 -14.59982 -14.31244 -14.24480 -13.62539 -13.45428 -13.25594 -13.14485 -13.02420 -12.79307 -12.63314 -12.50936 -12.40429 -12.17568 -11.88782 -11.75812 -11.50702 -11.14563 -10.87316 -10.63736 -10.19039 -10.00986 -9.55832 -9.29910 -8.21815 -6.36961 -0.51224 0.03051 0.57642 0.96994 1.07666 1.37020 1.41818 1.49272 2.17334 2.30684 2.42086 2.50994 2.85006 3.07401 3.18955 3.45057 3.62362 3.71590 3.81781 3.90354 4.01028 4.20514 4.24918 4.35519 4.45428 4.48751 4.66387 4.79695 4.85142 4.93905 4.99567 5.02924 5.04276 5.12900 5.20693 5.23283 5.39829 5.54958 5.57693 5.81027 5.86077 6.04826 6.52785 6.68992 6.71767 6.73677 7.23022 7.38650 8.85399 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.018471 B = 0.002967 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.533380 B = 9436.315811 C =10238.604755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.107 3.893 3 N -0.588 5.588 4 C 0.264 3.736 5 C -0.544 4.544 6 H 0.051 0.949 7 C 0.009 3.991 8 N -0.928 5.928 9 Si 0.969 3.031 10 H -0.277 1.277 11 H -0.276 1.276 12 H -0.260 1.260 13 C 0.577 3.423 14 O -0.574 6.574 15 C -0.041 4.041 16 N -0.230 5.230 17 N -0.228 5.228 18 C 0.145 3.855 19 C -0.126 4.126 20 C -0.058 4.058 21 C -0.143 4.143 22 C 0.112 3.888 23 F -0.136 7.136 24 C -0.163 4.163 25 C -0.020 4.020 26 C 0.035 3.965 27 O -0.467 6.467 28 H 0.096 0.904 29 H 0.037 0.963 30 H 0.048 0.952 31 H 0.094 0.906 32 H 0.073 0.927 33 H -0.002 1.002 34 H 0.028 0.972 35 H 0.268 0.732 36 H 0.147 0.853 37 H 0.178 0.822 38 H 0.169 0.831 39 H 0.161 0.839 40 H 0.232 0.768 41 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.441 -17.991 -21.329 29.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.015 4.015 3 N -0.318 5.318 4 C 0.143 3.857 5 C -0.582 4.582 6 H 0.070 0.930 7 C -0.190 4.190 8 N -0.567 5.567 9 Si 0.793 3.207 10 H -0.203 1.203 11 H -0.201 1.201 12 H -0.184 1.184 13 C 0.363 3.637 14 O -0.453 6.453 15 C -0.201 4.201 16 N -0.065 5.065 17 N -0.011 5.011 18 C 0.055 3.945 19 C -0.146 4.146 20 C -0.076 4.076 21 C -0.162 4.162 22 C 0.092 3.908 23 F -0.115 7.115 24 C -0.184 4.184 25 C -0.160 4.160 26 C -0.021 4.021 27 O -0.275 6.275 28 H 0.115 0.885 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.112 0.888 32 H 0.091 0.909 33 H 0.016 0.984 34 H 0.046 0.954 35 H 0.077 0.923 36 H 0.165 0.835 37 H 0.195 0.805 38 H 0.187 0.813 39 H 0.179 0.821 40 H 0.249 0.751 41 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -11.199 -17.959 -20.545 29.497 hybrid contribution 1.794 1.194 -0.054 2.155 sum -9.406 -16.766 -20.599 28.176 Atomic orbital electron populations 1.22007 0.94417 1.03248 1.00691 1.21801 0.95636 0.80957 1.03113 1.48170 1.62508 1.15105 1.06028 1.18801 0.95367 0.91695 0.79800 1.21623 0.96744 1.33185 1.06680 0.93028 1.25860 1.02900 0.94338 0.95886 1.70045 1.38178 1.34859 1.13631 0.85448 0.78794 0.79063 0.77385 1.20293 1.20129 1.18441 1.17343 0.78884 0.84747 0.82720 1.90756 1.46225 1.21548 1.86728 1.22495 1.07161 0.94967 0.95479 1.73892 1.17106 1.15336 1.00210 1.42634 1.39435 1.15579 1.03475 1.17484 0.98392 0.85658 0.92990 1.21329 0.98748 0.93507 1.01026 1.21294 0.94925 0.96292 0.95120 1.21674 1.01177 1.00060 0.93244 1.17365 1.00117 0.95436 0.77849 1.91542 1.93534 1.95421 1.30991 1.20821 1.03966 1.00187 0.93380 1.23357 1.03442 0.88872 1.00335 1.18337 1.04394 0.90120 0.89212 1.84839 1.27098 1.25840 1.89731 0.88521 0.94375 0.93263 0.88805 0.90853 0.98382 0.95395 0.92292 0.83525 0.80497 0.81335 0.82106 0.75134 0.73835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.29 9.68 71.98 0.70 -3.59 16 2 C 0.11 3.85 5.67 86.38 0.49 4.34 16 3 N -0.59 -27.86 2.46 -829.98 -2.04 -29.90 16 4 C 0.26 15.05 5.11 85.63 0.44 15.49 16 5 C -0.54 -32.56 9.39 25.60 0.24 -32.32 16 6 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 7 C 0.01 0.55 5.46 84.65 0.46 1.01 16 8 N -0.93 -57.23 13.29 21.45 0.28 -56.94 16 9 Si 0.97 45.78 29.54 68.60 2.03 47.81 16 10 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 11 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 12 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 13 C 0.58 27.82 7.64 86.68 0.66 28.48 16 14 O -0.57 -32.76 16.17 -2.23 -0.04 -32.79 16 15 C -0.04 -1.52 6.64 42.45 0.28 -1.24 16 16 N -0.23 -6.81 6.07 -48.05 -0.29 -7.10 16 17 N -0.23 -5.24 3.52 -186.84 -0.66 -5.90 16 18 C 0.14 2.45 6.66 38.11 0.25 2.70 16 19 C -0.13 -1.76 9.59 22.40 0.21 -1.54 16 20 C -0.06 -0.45 10.04 22.24 0.22 -0.23 16 21 C -0.14 -1.11 10.02 22.34 0.22 -0.89 16 22 C 0.11 1.30 7.30 22.36 0.16 1.46 16 23 F -0.14 -1.81 17.27 44.97 0.78 -1.03 16 24 C -0.16 -2.08 9.41 22.43 0.21 -1.87 16 25 C -0.02 -0.44 10.81 83.45 0.90 0.47 16 26 C 0.03 1.08 7.35 22.58 0.17 1.25 16 27 O -0.47 -14.64 13.21 -92.54 -1.22 -15.86 16 28 H 0.10 2.02 8.14 -2.38 -0.02 2.00 16 29 H 0.04 1.22 8.14 -2.39 -0.02 1.21 16 30 H 0.05 1.52 6.56 -2.39 -0.02 1.50 16 31 H 0.09 3.08 5.73 -2.38 -0.01 3.06 16 32 H 0.07 2.66 8.05 -2.39 -0.02 2.64 16 33 H 0.00 -0.13 7.50 -2.39 -0.02 -0.14 16 34 H 0.03 1.60 8.07 -2.39 -0.02 1.58 16 35 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 36 H 0.15 2.19 7.64 -2.91 -0.02 2.17 16 37 H 0.18 0.29 8.06 -2.91 -0.02 0.27 16 38 H 0.17 0.45 8.06 -2.91 -0.02 0.43 16 39 H 0.16 1.45 6.65 -2.91 -0.02 1.43 16 40 H 0.23 2.69 6.96 -2.91 -0.02 2.67 16 41 H 0.40 9.18 9.07 -74.05 -0.67 8.51 16 Total: -1.00 -83.01 358.35 4.89 -78.12 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: 0.42 Total: 10.09 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: 5.63 Total: 13.51 kcal Atomic # 7 Polarization: -97.13 SS G_CDS: -2.71 Total: -99.84 kcal Atomic # 8 Polarization: -47.40 SS G_CDS: -1.26 Total: -48.66 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.78 Total: -1.03 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -83.01 4.89 -78.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283265860.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.782 kcal (2) G-P(sol) polarization free energy of solvation -83.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds