Wall clock time and date at job start Tue Mar 31 2020 18:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 109.47489 * 2 1 4 4 C 1.50705 * 109.47085 * 119.99798 * 2 1 3 5 5 H 1.07993 * 120.00181 * 119.99887 * 4 2 1 6 6 C 1.37884 * 119.99631 * 299.99790 * 4 2 1 7 7 N 1.31511 * 120.00027 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99650 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47378 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46811 * 120.00128 * 8 6 4 11 11 H 1.48499 * 109.47136 * 239.99757 * 8 6 4 12 12 N 1.46497 * 109.47232 * 239.99203 * 2 1 3 13 13 C 1.46495 * 120.00536 * 300.00490 * 12 2 1 14 14 C 1.34784 * 119.99661 * 119.99976 * 12 2 1 15 15 O 1.21599 * 119.99737 * 4.13186 * 14 12 2 16 16 C 1.47480 * 119.99895 * 184.13147 * 14 12 2 17 17 N 1.31986 * 126.44279 * 4.72672 * 16 14 12 18 18 N 1.28465 * 110.22173 * 179.97438 * 17 16 14 19 19 C 1.40086 * 124.93962 * 179.97438 * 18 17 16 20 20 C 1.38900 * 120.05333 * 0.03009 * 19 18 17 21 21 C 1.38096 * 119.97731 * 179.97438 * 20 19 18 22 22 C 1.38269 * 120.09945 * 359.97438 * 21 20 19 23 23 C 1.38491 * 120.11178 * 359.97438 * 22 21 20 24 24 F 1.35095 * 119.99417 * 180.02562 * 23 22 21 25 25 C 1.38360 * 120.01378 * 359.78606 * 23 22 21 26 26 C 1.36114 * 110.12601 * 0.02562 * 18 17 16 27 27 C 1.35767 * 107.05837 * 359.76230 * 26 18 17 28 28 O 1.36081 * 127.26053 * 180.22889 * 27 26 18 29 29 H 1.09000 * 109.47427 * 60.00117 * 1 2 3 30 30 H 1.09000 * 109.47635 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47475 * 300.00319 * 1 2 3 32 32 H 0.97003 * 119.99874 * 180.02562 * 7 6 4 33 33 H 1.08997 * 109.47275 * 264.21138 * 13 12 2 34 34 H 1.09001 * 109.47595 * 144.20467 * 13 12 2 35 35 H 1.09009 * 109.46834 * 24.20553 * 13 12 2 36 36 H 1.07997 * 120.01349 * 359.97438 * 20 19 18 37 37 H 1.08007 * 119.95488 * 180.02562 * 21 20 19 38 38 H 1.07994 * 119.94718 * 180.02562 * 22 21 20 39 39 H 1.08008 * 120.04665 * 180.25300 * 25 23 22 40 40 H 1.08000 * 126.47237 * 180.02562 * 26 18 17 41 41 H 0.96700 * 113.99903 * 270.15814 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6531 -1.5885 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9427 0.8298 2.6033 8 14 2.3212 -1.1201 4.0081 9 1 3.1463 -2.2868 3.6040 10 1 3.1465 -0.1871 4.8165 11 1 1.1659 -1.5863 4.8162 12 7 2.0183 -0.6908 -1.1960 13 6 1.6644 -2.0933 -1.4278 14 6 2.7932 -0.0358 -2.0833 15 8 3.1489 1.1043 -1.8545 16 6 3.2095 -0.7018 -3.3315 17 7 2.8293 -1.8952 -3.7479 18 7 3.3804 -2.1684 -4.8757 19 6 3.1910 -3.3557 -5.5946 20 6 2.3536 -4.3451 -5.0953 21 6 2.1676 -5.5147 -5.8054 22 6 2.8133 -5.7026 -7.0136 23 6 3.6482 -4.7183 -7.5155 24 9 4.2775 -4.9041 -8.6964 25 6 3.8341 -3.5425 -6.8103 26 6 4.1761 -1.1369 -5.2702 27 6 4.0898 -0.1784 -4.3125 28 8 4.7175 1.0288 -4.2962 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 0.7087 1.1615 3.4843 33 1 2.4657 -2.7354 -1.0623 34 1 1.5230 -2.2607 -2.4956 35 1 0.7409 -2.3273 -0.8980 36 1 1.8482 -4.1997 -4.1520 37 1 1.5160 -6.2837 -5.4170 38 1 2.6657 -6.6181 -7.5671 39 1 4.4819 -2.7728 -7.2033 40 1 4.7619 -1.0881 -6.1763 41 1 5.5852 1.0153 -3.8696 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283862335.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:51 Heat of formation + Delta-G solvation = 13.651398 kcal Electronic energy + Delta-G solvation = -28089.030818 eV Core-core repulsion = 23887.020226 eV Total energy + Delta-G solvation = -4202.010592 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.40789 -43.04870 -39.52058 -38.64088 -37.19823 -35.25010 -33.75668 -32.70799 -31.44577 -30.40040 -29.56476 -28.86747 -26.12283 -25.22220 -24.71767 -23.69202 -22.28665 -21.40010 -20.68066 -19.33330 -18.44890 -17.65461 -16.83878 -16.78160 -16.58060 -16.38649 -16.19363 -16.05699 -15.79940 -15.26844 -14.64082 -14.35928 -14.27363 -14.23154 -14.00483 -13.62703 -12.99848 -12.79363 -12.72311 -12.50263 -12.33591 -12.09731 -11.84758 -11.53383 -11.05590 -10.93975 -10.78511 -10.73450 -10.30706 -10.22796 -10.18360 -10.11236 -9.43164 -9.24468 -9.21183 -9.08340 -8.48442 -8.41442 -7.53232 -6.04927 -4.12485 0.22161 0.58846 1.77614 1.91554 1.99514 3.08996 3.27549 3.35361 3.38705 3.60836 3.77393 3.91048 4.03773 4.27760 4.37891 4.41960 4.45259 4.58135 4.68792 4.82842 4.98577 5.15973 5.26431 5.40659 5.47967 5.50808 5.69774 5.75778 5.95271 6.11636 6.14157 6.29237 6.45671 6.68855 6.81616 6.88822 7.07977 7.46296 7.52728 7.66575 7.73103 7.74103 8.04135 8.21278 8.53112 8.84688 9.03628 9.53673 11.00497 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.016700 B = 0.002940 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.283385 B = 9521.671313 C =10543.592684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.257 3.743 3 H 0.065 0.935 4 C -0.523 4.523 5 H 0.060 0.940 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.899 3.101 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.574 5.574 13 C 0.076 3.924 14 C 0.581 3.419 15 O -0.531 6.531 16 C 0.006 3.994 17 N -0.243 5.243 18 N -0.243 5.243 19 C 0.180 3.820 20 C -0.121 4.121 21 C -0.065 4.065 22 C -0.159 4.159 23 C 0.124 3.876 24 F -0.132 7.132 25 C -0.171 4.171 26 C -0.045 4.045 27 C 0.057 3.943 28 O -0.450 6.450 29 H 0.012 0.988 30 H 0.031 0.969 31 H 0.095 0.905 32 H 0.263 0.737 33 H 0.043 0.957 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.152 0.848 37 H 0.147 0.853 38 H 0.143 0.857 39 H 0.146 0.854 40 H 0.188 0.812 41 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.477 -13.449 -20.205 24.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.158 3.842 3 H 0.083 0.917 4 C -0.561 4.561 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.305 5.305 13 C -0.068 4.068 14 C 0.364 3.636 15 O -0.407 6.407 16 C -0.157 4.157 17 N -0.076 5.076 18 N -0.025 5.025 19 C 0.088 3.912 20 C -0.141 4.141 21 C -0.083 4.083 22 C -0.178 4.178 23 C 0.104 3.896 24 F -0.110 7.110 25 C -0.192 4.192 26 C -0.185 4.185 27 C 0.002 3.998 28 O -0.256 6.256 29 H 0.031 0.969 30 H 0.050 0.950 31 H 0.113 0.887 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.169 0.831 37 H 0.165 0.835 38 H 0.161 0.839 39 H 0.164 0.836 40 H 0.205 0.795 41 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 3.437 -13.419 -19.974 24.307 hybrid contribution 1.404 -0.028 0.622 1.536 sum 4.841 -13.447 -19.352 24.058 Atomic orbital electron populations 1.22105 0.97998 0.99509 1.00951 1.19027 0.90967 0.94531 0.79723 0.91747 1.21349 1.31698 1.12932 0.90168 0.92186 1.24891 0.94980 0.94995 0.98939 1.69889 1.36444 1.22656 1.23635 0.86434 0.78583 0.79589 0.82745 1.19838 1.20920 1.20946 1.48139 1.47576 1.12028 1.22725 1.21989 1.00701 0.82237 1.01844 1.16851 0.80065 0.85448 0.81224 1.90792 1.56143 1.17350 1.76428 1.23192 1.01928 0.91730 0.98858 1.73957 1.19224 1.16526 0.97878 1.42425 1.32872 1.12200 1.15028 1.17222 0.98422 0.84521 0.91015 1.21133 0.98465 0.92446 1.02076 1.20972 0.97677 0.96674 0.93025 1.21295 0.98693 0.99801 0.98029 1.17205 0.95135 0.94472 0.82745 1.91541 1.80332 1.95343 1.43828 1.20687 1.04575 0.99056 0.94875 1.22880 1.02518 0.89230 1.03863 1.18116 0.99943 0.87939 0.93801 1.84899 1.36189 1.23871 1.80639 0.96873 0.94987 0.88660 0.92743 0.93807 0.89867 0.91042 0.83065 0.83530 0.83941 0.83612 0.79526 0.75461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.59 8.96 37.15 0.33 -3.26 16 2 C 0.26 6.74 2.62 -69.08 -0.18 6.56 16 3 H 0.06 1.94 6.91 -51.93 -0.36 1.58 16 4 C -0.52 -14.36 8.37 -34.44 -0.29 -14.65 16 5 H 0.06 1.64 7.65 -52.49 -0.40 1.24 16 6 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -25.27 11.32 55.43 0.63 -24.65 16 8 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 9 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 N -0.57 -13.04 2.75 -176.51 -0.49 -13.52 16 13 C 0.08 1.42 9.03 59.84 0.54 1.96 16 14 C 0.58 13.11 7.67 -12.49 -0.10 13.02 16 15 O -0.53 -13.72 15.87 3.27 0.05 -13.67 16 16 C 0.01 0.11 6.86 -82.67 -0.57 -0.45 16 17 N -0.24 -3.78 7.57 33.46 0.25 -3.53 16 18 N -0.24 -3.09 3.52 -10.41 -0.04 -3.12 16 19 C 0.18 1.81 6.66 -83.63 -0.56 1.26 16 20 C -0.12 -1.07 9.59 -39.39 -0.38 -1.44 16 21 C -0.06 -0.41 10.04 -39.62 -0.40 -0.80 16 22 C -0.16 -1.00 10.02 -39.48 -0.40 -1.39 16 23 C 0.12 0.96 7.30 -39.44 -0.29 0.68 16 24 F -0.13 -1.10 17.27 2.25 0.04 -1.06 16 25 C -0.17 -1.40 9.41 -39.33 -0.37 -1.77 16 26 C -0.05 -0.54 10.81 -16.54 -0.18 -0.72 16 27 C 0.06 0.89 7.35 -39.10 -0.29 0.60 16 28 O -0.45 -6.73 13.21 -22.00 -0.29 -7.02 16 29 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.03 0.72 6.67 -51.93 -0.35 0.37 16 31 H 0.09 2.52 6.07 -51.93 -0.32 2.21 16 32 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 33 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.08 1.37 5.01 -51.93 -0.26 1.11 16 35 H 0.07 1.31 6.44 -51.92 -0.33 0.97 16 36 H 0.15 1.38 7.64 -52.49 -0.40 0.98 16 37 H 0.15 0.53 8.06 -52.48 -0.42 0.11 16 38 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 39 H 0.15 0.95 6.65 -52.48 -0.35 0.60 16 40 H 0.19 1.45 6.96 -52.49 -0.37 1.08 16 41 H 0.39 4.08 9.07 45.56 0.41 4.49 16 LS Contribution 352.12 15.07 5.31 5.31 Total: -1.00 -34.12 352.12 -6.31 -40.42 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -3.54 Total: 3.43 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: -3.21 Total: 1.24 kcal Atomic # 7 Polarization: -45.18 SS G_CDS: 0.36 Total: -44.82 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: -0.24 Total: -20.69 kcal Atomic # 9 Polarization: -1.10 SS G_CDS: 0.04 Total: -1.06 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.12 -6.31 -40.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283862335.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.075 kcal (2) G-P(sol) polarization free energy of solvation -34.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds