Wall clock time and date at job start Tue Mar 31 2020 18:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46740 * 2 1 4 4 C 1.50696 * 109.46994 * 240.00032 * 2 1 3 5 5 H 1.08002 * 119.99440 * 239.99441 * 4 2 1 6 6 C 1.37877 * 120.00168 * 60.00009 * 4 2 1 7 7 N 1.31508 * 119.99817 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99629 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47462 * 60.00094 * 8 6 4 10 10 H 1.48503 * 109.46733 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47390 * 299.99627 * 8 6 4 12 12 N 1.46502 * 109.47046 * 119.99491 * 2 1 3 13 13 C 1.46500 * 119.99604 * 60.00432 * 12 2 1 14 14 C 1.34774 * 120.00116 * 240.00018 * 12 2 1 15 15 O 1.21597 * 119.99994 * 5.34344 * 14 12 2 16 16 C 1.47482 * 119.99764 * 185.33878 * 14 12 2 17 17 N 1.31987 * 126.44521 * 5.44228 * 16 14 12 18 18 N 1.28462 * 110.21778 * 179.85786 * 17 16 14 19 19 C 1.40097 * 124.93493 * 180.19600 * 18 17 16 20 20 C 1.38895 * 120.05515 * 0.25611 * 19 18 17 21 21 C 1.38101 * 119.98211 * 180.02562 * 20 19 18 22 22 C 1.38266 * 120.09066 * 359.97438 * 21 20 19 23 23 C 1.38488 * 120.11569 * 359.97438 * 22 21 20 24 24 F 1.35099 * 119.98906 * 180.02562 * 23 22 21 25 25 C 1.38352 * 120.01671 * 359.76061 * 23 22 21 26 26 C 1.36112 * 110.13166 * 0.41635 * 18 17 16 27 27 C 1.35768 * 107.05797 * 359.75348 * 26 18 17 28 28 O 1.36075 * 127.25834 * 179.97438 * 27 26 18 29 29 H 1.08997 * 109.46740 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47073 * 299.99968 * 1 2 3 31 31 H 1.08996 * 109.47103 * 60.00442 * 1 2 3 32 32 H 0.97004 * 119.99713 * 179.97438 * 7 6 4 33 33 H 1.09001 * 109.46880 * 95.28935 * 13 12 2 34 34 H 1.09005 * 109.47279 * 215.28889 * 13 12 2 35 35 H 1.09000 * 109.47431 * 335.28603 * 13 12 2 36 36 H 1.08006 * 120.00788 * 0.03102 * 20 19 18 37 37 H 1.08002 * 119.95404 * 180.02562 * 21 20 19 38 38 H 1.08006 * 119.94216 * 180.02562 * 22 21 20 39 39 H 1.08004 * 120.05197 * 180.25714 * 25 23 22 40 40 H 1.07996 * 126.47343 * 179.71667 * 26 18 17 41 41 H 0.96700 * 113.99721 * 270.02044 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5884 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6033 8 14 2.3225 -1.1196 -4.0078 9 1 1.8281 -2.5199 -4.0081 10 1 1.8269 -0.4200 -5.2204 11 1 3.8076 -1.1190 -4.0077 12 7 2.0184 -0.6905 1.1963 13 6 1.6645 -2.0931 1.4281 14 6 2.7932 -0.0355 2.0834 15 8 3.0071 1.1532 1.9425 16 6 3.3815 -0.7604 3.2251 17 7 3.3174 -2.0602 3.4457 18 7 3.9393 -2.3577 4.5296 19 6 4.0668 -3.6513 5.0521 20 6 3.5011 -4.7300 4.3847 21 6 3.6272 -6.0045 4.9014 22 6 4.3166 -6.2086 6.0825 23 6 4.8831 -5.1360 6.7506 24 9 5.5566 -5.3384 7.9042 25 6 4.7642 -3.8579 6.2342 26 6 4.4523 -1.2330 5.0992 27 6 4.1172 -0.1912 4.2956 28 8 4.4224 1.1221 4.4791 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 0.7088 1.1612 -3.4844 33 1 2.4619 -2.7355 1.0546 34 1 1.5317 -2.2625 2.4967 35 1 0.7364 -2.3248 0.9055 36 1 2.9627 -4.5722 3.4617 37 1 3.1875 -6.8430 4.3818 38 1 4.4141 -7.2064 6.4842 39 1 5.2094 -3.0216 6.7527 40 1 5.0185 -1.1792 6.0173 41 1 3.7619 1.6120 4.9878 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283862338.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:55 Heat of formation + Delta-G solvation = 11.394445 kcal Electronic energy + Delta-G solvation = -28104.306835 eV Core-core repulsion = 23902.198374 eV Total energy + Delta-G solvation = -4202.108460 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.39893 -43.03655 -39.51228 -38.64483 -37.20143 -35.25400 -33.73757 -32.70852 -31.43263 -30.37529 -29.56556 -28.86936 -26.13023 -25.21476 -24.71719 -23.68170 -22.28032 -21.37995 -20.67924 -19.28798 -18.45182 -17.64869 -16.84715 -16.80990 -16.53589 -16.41827 -16.16413 -16.01827 -15.80856 -15.26529 -14.62058 -14.34176 -14.28768 -14.23459 -14.01266 -13.61785 -13.00254 -12.77988 -12.65728 -12.46087 -12.26315 -12.08840 -11.82125 -11.53372 -11.09113 -11.03818 -10.78238 -10.71822 -10.34791 -10.28009 -10.19636 -10.12141 -9.42032 -9.22813 -9.21918 -9.10156 -8.47723 -8.40615 -7.54641 -6.04683 -4.12517 0.23491 0.59935 1.79391 1.91582 2.01477 3.10077 3.30472 3.35211 3.37414 3.61684 3.77678 3.90083 4.04362 4.28484 4.38750 4.42587 4.46160 4.58841 4.69890 4.83757 4.99754 5.16589 5.26614 5.41681 5.48903 5.52035 5.71504 5.77821 5.95691 6.09228 6.15328 6.25755 6.46324 6.64908 6.80589 6.86873 7.07651 7.44597 7.52491 7.66227 7.73190 7.73851 8.04463 8.20771 8.52592 8.84007 9.03237 9.53682 11.00661 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.015333 B = 0.003052 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.658155 B = 9173.560031 C =10373.537188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.258 3.742 3 H 0.065 0.935 4 C -0.526 4.526 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.575 5.575 13 C 0.092 3.908 14 C 0.582 3.418 15 O -0.533 6.533 16 C 0.003 3.997 17 N -0.240 5.240 18 N -0.242 5.242 19 C 0.180 3.820 20 C -0.121 4.121 21 C -0.065 4.065 22 C -0.159 4.159 23 C 0.124 3.876 24 F -0.132 7.132 25 C -0.171 4.171 26 C -0.047 4.047 27 C 0.057 3.943 28 O -0.450 6.450 29 H 0.031 0.969 30 H 0.012 0.988 31 H 0.095 0.905 32 H 0.264 0.736 33 H 0.048 0.952 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.152 0.848 37 H 0.147 0.853 38 H 0.143 0.857 39 H 0.146 0.854 40 H 0.188 0.812 41 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.216 -13.414 20.173 24.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.159 3.841 3 H 0.082 0.918 4 C -0.564 4.564 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.526 5.526 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.306 5.306 13 C -0.052 4.052 14 C 0.366 3.634 15 O -0.409 6.409 16 C -0.160 4.160 17 N -0.073 5.073 18 N -0.025 5.025 19 C 0.088 3.912 20 C -0.141 4.141 21 C -0.084 4.084 22 C -0.178 4.178 23 C 0.104 3.896 24 F -0.111 7.111 25 C -0.192 4.192 26 C -0.186 4.186 27 C 0.002 3.998 28 O -0.255 6.255 29 H 0.050 0.950 30 H 0.031 0.969 31 H 0.113 0.887 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.170 0.830 37 H 0.165 0.835 38 H 0.161 0.839 39 H 0.164 0.836 40 H 0.205 0.795 41 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 4.345 -13.765 19.209 24.028 hybrid contribution 0.477 0.277 0.011 0.552 sum 4.822 -13.489 19.220 23.971 Atomic orbital electron populations 1.22096 0.98015 0.99463 1.00945 1.19016 0.91055 0.94507 0.79544 0.91753 1.21287 1.31894 1.13063 0.90190 0.92245 1.24879 0.94938 0.94986 0.98914 1.69868 1.36307 1.22585 1.23867 0.86541 0.79274 0.79557 0.81926 1.20225 1.21173 1.20237 1.48156 1.47536 1.12145 1.22715 1.21696 1.00752 0.82462 1.00260 1.16818 0.79772 0.86042 0.80803 1.90788 1.61440 1.13998 1.74627 1.23143 1.03403 0.89640 0.99817 1.74029 1.15008 1.16242 1.02031 1.42326 1.38020 1.05092 1.17065 1.17220 0.99070 0.81350 0.93510 1.21145 1.00655 0.90760 1.01511 1.20974 0.96306 0.96784 0.94298 1.21295 1.00610 0.98969 0.96942 1.17199 0.95453 0.93157 0.83773 1.91541 1.77706 1.95642 1.46166 1.20681 1.04100 0.97580 0.96831 1.22865 1.07563 0.85825 1.02387 1.18123 1.01690 0.85861 0.94133 1.84913 1.48040 1.15683 1.76870 0.95022 0.96865 0.88682 0.92620 0.93294 0.91853 0.91063 0.83012 0.83533 0.83945 0.83621 0.79532 0.75601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.55 8.96 37.16 0.33 -3.22 16 2 C 0.26 6.76 2.62 -69.08 -0.18 6.58 16 3 H 0.06 1.93 6.91 -51.93 -0.36 1.57 16 4 C -0.53 -14.49 8.37 -34.44 -0.29 -14.77 16 5 H 0.06 1.62 7.65 -52.49 -0.40 1.22 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 7 N -0.89 -25.28 11.32 55.43 0.63 -24.66 16 8 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 9 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 N -0.58 -13.02 2.75 -176.51 -0.49 -13.51 16 13 C 0.09 1.70 8.52 59.85 0.51 2.21 16 14 C 0.58 13.15 7.66 -12.50 -0.10 13.05 16 15 O -0.53 -13.73 15.88 3.43 0.05 -13.67 16 16 C 0.00 0.06 6.76 -82.66 -0.56 -0.50 16 17 N -0.24 -3.79 7.90 33.46 0.26 -3.52 16 18 N -0.24 -3.12 3.52 -10.41 -0.04 -3.16 16 19 C 0.18 1.85 6.66 -83.63 -0.56 1.29 16 20 C -0.12 -1.09 9.59 -39.39 -0.38 -1.47 16 21 C -0.07 -0.42 10.04 -39.62 -0.40 -0.82 16 22 C -0.16 -1.02 10.02 -39.48 -0.40 -1.42 16 23 C 0.12 0.98 7.30 -39.45 -0.29 0.69 16 24 F -0.13 -1.11 17.27 2.25 0.04 -1.08 16 25 C -0.17 -1.43 9.41 -39.33 -0.37 -1.80 16 26 C -0.05 -0.57 10.81 -16.54 -0.18 -0.75 16 27 C 0.06 0.89 7.35 -39.10 -0.29 0.60 16 28 O -0.45 -6.72 13.21 -21.83 -0.29 -7.01 16 29 H 0.03 0.70 6.67 -51.93 -0.35 0.36 16 30 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.09 2.50 6.07 -51.93 -0.32 2.19 16 32 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 33 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.06 1.03 5.92 -51.93 -0.31 0.72 16 35 H 0.07 1.29 6.44 -51.93 -0.33 0.96 16 36 H 0.15 1.44 7.64 -52.48 -0.40 1.04 16 37 H 0.15 0.57 8.06 -52.49 -0.42 0.14 16 38 H 0.14 0.60 8.06 -52.48 -0.42 0.18 16 39 H 0.15 0.97 6.65 -52.48 -0.35 0.62 16 40 H 0.19 1.47 6.96 -52.49 -0.37 1.10 16 41 H 0.39 3.94 9.07 45.56 0.41 4.35 16 LS Contribution 352.76 15.07 5.32 5.32 Total: -1.00 -34.16 352.76 -6.35 -40.51 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -3.59 Total: 3.12 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: -3.23 Total: 1.39 kcal Atomic # 7 Polarization: -45.22 SS G_CDS: 0.37 Total: -44.85 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: -0.23 Total: -20.68 kcal Atomic # 9 Polarization: -1.11 SS G_CDS: 0.04 Total: -1.08 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.16 -6.35 -40.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283862338.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.908 kcal (2) G-P(sol) polarization free energy of solvation -34.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds