Wall clock time and date at job start Tue Mar 31 2020 18:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46740 * 2 1 4 4 C 1.50696 * 109.46994 * 240.00032 * 2 1 3 5 5 H 1.08002 * 119.99440 * 239.99441 * 4 2 1 6 6 C 1.37877 * 120.00168 * 60.00009 * 4 2 1 7 7 N 1.31508 * 119.99817 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99629 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47462 * 60.00094 * 8 6 4 10 10 H 1.48503 * 109.46733 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47390 * 299.99627 * 8 6 4 12 12 N 1.46502 * 109.47046 * 119.99491 * 2 1 3 13 13 C 1.46500 * 119.99604 * 60.00432 * 12 2 1 14 14 C 1.34774 * 120.00116 * 240.00018 * 12 2 1 15 15 O 1.21597 * 119.99994 * 5.34344 * 14 12 2 16 16 C 1.47482 * 119.99764 * 185.33878 * 14 12 2 17 17 N 1.31987 * 126.44521 * 5.44228 * 16 14 12 18 18 N 1.28462 * 110.21778 * 179.85786 * 17 16 14 19 19 C 1.40097 * 124.93493 * 180.19600 * 18 17 16 20 20 C 1.38895 * 120.05515 * 0.25611 * 19 18 17 21 21 C 1.38101 * 119.98211 * 180.02562 * 20 19 18 22 22 C 1.38266 * 120.09066 * 359.97438 * 21 20 19 23 23 C 1.38488 * 120.11569 * 359.97438 * 22 21 20 24 24 F 1.35099 * 119.98906 * 180.02562 * 23 22 21 25 25 C 1.38352 * 120.01671 * 359.76061 * 23 22 21 26 26 C 1.36112 * 110.13166 * 0.41635 * 18 17 16 27 27 C 1.35768 * 107.05797 * 359.75348 * 26 18 17 28 28 O 1.36075 * 127.25834 * 179.97438 * 27 26 18 29 29 H 1.08997 * 109.46740 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47073 * 299.99968 * 1 2 3 31 31 H 1.08996 * 109.47103 * 60.00442 * 1 2 3 32 32 H 0.97004 * 119.99713 * 179.97438 * 7 6 4 33 33 H 1.09001 * 109.46880 * 95.28935 * 13 12 2 34 34 H 1.09005 * 109.47279 * 215.28889 * 13 12 2 35 35 H 1.09000 * 109.47431 * 335.28603 * 13 12 2 36 36 H 1.08006 * 120.00788 * 0.03102 * 20 19 18 37 37 H 1.08002 * 119.95404 * 180.02562 * 21 20 19 38 38 H 1.08006 * 119.94216 * 180.02562 * 22 21 20 39 39 H 1.08004 * 120.05197 * 180.25714 * 25 23 22 40 40 H 1.07996 * 126.47343 * 179.71667 * 26 18 17 41 41 H 0.96700 * 113.99721 * 270.02044 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5884 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6033 8 14 2.3225 -1.1196 -4.0078 9 1 1.8281 -2.5199 -4.0081 10 1 1.8269 -0.4200 -5.2204 11 1 3.8076 -1.1190 -4.0077 12 7 2.0184 -0.6905 1.1963 13 6 1.6645 -2.0931 1.4281 14 6 2.7932 -0.0355 2.0834 15 8 3.0071 1.1532 1.9425 16 6 3.3815 -0.7604 3.2251 17 7 3.3174 -2.0602 3.4457 18 7 3.9393 -2.3577 4.5296 19 6 4.0668 -3.6513 5.0521 20 6 3.5011 -4.7300 4.3847 21 6 3.6272 -6.0045 4.9014 22 6 4.3166 -6.2086 6.0825 23 6 4.8831 -5.1360 6.7506 24 9 5.5566 -5.3384 7.9042 25 6 4.7642 -3.8579 6.2342 26 6 4.4523 -1.2330 5.0992 27 6 4.1172 -0.1912 4.2956 28 8 4.4224 1.1221 4.4791 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 0.7088 1.1612 -3.4844 33 1 2.4619 -2.7355 1.0546 34 1 1.5317 -2.2625 2.4967 35 1 0.7364 -2.3248 0.9055 36 1 2.9627 -4.5722 3.4617 37 1 3.1875 -6.8430 4.3818 38 1 4.4141 -7.2064 6.4842 39 1 5.2094 -3.0216 6.7527 40 1 5.0185 -1.1792 6.0173 41 1 3.7619 1.6120 4.9878 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283862338.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:54 Heat of formation + Delta-G solvation = -11.695096 kcal Electronic energy + Delta-G solvation = -28105.308072 eV Core-core repulsion = 23902.198374 eV Total energy + Delta-G solvation = -4203.109698 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.99740 -44.12540 -40.66830 -39.90950 -38.30945 -37.12519 -35.04396 -34.32424 -32.16501 -31.76224 -30.79412 -30.06955 -27.73380 -27.30342 -25.95134 -24.44967 -23.41692 -22.30037 -22.17235 -20.52699 -19.72488 -18.64916 -18.54527 -17.92805 -17.61017 -17.45709 -17.25599 -17.00256 -16.75430 -16.61192 -16.14610 -15.92854 -15.50735 -15.36249 -14.81888 -14.72193 -14.46409 -14.25082 -13.99262 -13.56907 -13.49590 -13.45484 -13.01057 -12.95248 -12.73975 -12.71458 -12.46234 -12.30980 -12.18387 -12.13123 -11.58099 -11.22482 -11.18470 -10.91660 -10.52681 -10.23881 -10.02591 -9.50468 -9.26849 -8.15178 -6.32156 -0.52643 0.01396 0.55775 0.96480 1.05724 1.41344 1.44186 1.51715 2.17574 2.28532 2.44723 2.49198 2.84619 3.12399 3.18138 3.43487 3.63019 3.70792 3.81220 3.89781 3.99862 4.23630 4.32906 4.43086 4.48975 4.70797 4.76417 4.80900 4.88164 4.89382 4.96276 5.03195 5.06284 5.11281 5.22302 5.43352 5.51848 5.60605 5.64558 5.82079 6.01373 6.13592 6.53784 6.71765 6.73145 6.76393 7.22231 7.41499 8.89286 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.015333 B = 0.003052 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.658155 B = 9173.560031 C =10373.537188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.263 3.737 3 H 0.012 0.988 4 C -0.542 4.542 5 H 0.057 0.943 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.966 3.034 9 H -0.261 1.261 10 H -0.281 1.281 11 H -0.279 1.279 12 N -0.584 5.584 13 C 0.099 3.901 14 C 0.575 3.425 15 O -0.581 6.581 16 C -0.039 4.039 17 N -0.240 5.240 18 N -0.228 5.228 19 C 0.144 3.856 20 C -0.128 4.128 21 C -0.058 4.058 22 C -0.142 4.142 23 C 0.113 3.887 24 F -0.135 7.135 25 C -0.161 4.161 26 C -0.019 4.019 27 C 0.036 3.964 28 O -0.466 6.466 29 H 0.049 0.951 30 H 0.021 0.979 31 H 0.072 0.928 32 H 0.266 0.734 33 H 0.051 0.949 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.143 0.857 37 H 0.176 0.824 38 H 0.170 0.830 39 H 0.163 0.837 40 H 0.234 0.766 41 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.017 -16.992 21.973 28.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.161 3.839 3 H 0.030 0.970 4 C -0.581 4.581 5 H 0.076 0.924 6 C -0.182 4.182 7 N -0.554 5.554 8 Si 0.791 3.209 9 H -0.185 1.185 10 H -0.206 1.206 11 H -0.205 1.205 12 N -0.314 5.314 13 C -0.044 4.044 14 C 0.362 3.638 15 O -0.461 6.461 16 C -0.200 4.200 17 N -0.075 5.075 18 N -0.012 5.012 19 C 0.054 3.946 20 C -0.148 4.148 21 C -0.077 4.077 22 C -0.161 4.161 23 C 0.093 3.907 24 F -0.114 7.114 25 C -0.182 4.182 26 C -0.159 4.159 27 C -0.019 4.019 28 O -0.274 6.274 29 H 0.068 0.932 30 H 0.040 0.960 31 H 0.091 0.909 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.104 0.896 35 H 0.092 0.908 36 H 0.161 0.839 37 H 0.194 0.806 38 H 0.188 0.812 39 H 0.181 0.819 40 H 0.250 0.750 41 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 5.127 -17.387 21.035 27.768 hybrid contribution 0.282 1.226 -0.372 1.312 sum 5.409 -16.161 20.662 26.784 Atomic orbital electron populations 1.21884 0.96686 1.00282 1.00196 1.18645 0.92015 0.92199 0.81003 0.96993 1.21509 1.32257 1.13191 0.91132 0.92439 1.25722 0.94960 0.95630 1.01912 1.70008 1.37042 1.23727 1.24627 0.85494 0.78314 0.79084 0.78036 1.18545 1.20583 1.20472 1.48141 1.47803 1.13581 1.21864 1.21798 1.00722 0.80044 1.01795 1.17368 0.79062 0.85812 0.81587 1.90731 1.63021 1.16180 1.76130 1.22521 1.06484 0.90930 1.00015 1.73867 1.15514 1.14878 1.03283 1.42610 1.36252 1.06452 1.15847 1.17490 1.01788 0.80277 0.95026 1.21300 1.00457 0.91677 1.01326 1.21282 0.95690 0.96484 0.94215 1.21672 0.98441 0.99878 0.96101 1.17347 0.95941 0.93433 0.83936 1.91542 1.77847 1.95625 1.46360 1.20821 1.02957 0.98577 0.95865 1.23393 1.05844 0.84069 1.02615 1.18309 1.02558 0.86702 0.94356 1.84855 1.48977 1.16058 1.77482 0.93249 0.96016 0.90927 0.92468 0.93059 0.89612 0.90835 0.83899 0.80614 0.81243 0.81919 0.74975 0.73728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.60 8.96 71.98 0.64 -5.95 16 2 C 0.26 14.42 2.62 44.24 0.12 14.54 16 3 H 0.01 0.78 6.91 -2.39 -0.02 0.77 16 4 C -0.54 -30.74 8.37 25.60 0.21 -30.53 16 5 H 0.06 3.20 7.65 -2.91 -0.02 3.18 16 6 C 0.02 0.99 5.30 84.66 0.45 1.44 16 7 N -0.92 -53.62 11.32 21.45 0.24 -53.37 16 8 Si 0.97 43.94 29.54 68.60 2.03 45.97 16 9 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 10 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 11 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 12 N -0.58 -27.55 2.75 -830.62 -2.29 -29.84 16 13 C 0.10 3.67 8.52 127.77 1.09 4.75 16 14 C 0.58 27.42 7.66 86.68 0.66 28.09 16 15 O -0.58 -32.16 15.88 -2.25 -0.04 -32.20 16 16 C -0.04 -1.47 6.76 42.45 0.29 -1.18 16 17 N -0.24 -7.45 7.90 -48.05 -0.38 -7.82 16 18 N -0.23 -5.47 3.52 -186.84 -0.66 -6.12 16 19 C 0.14 2.59 6.66 38.11 0.25 2.84 16 20 C -0.13 -1.99 9.59 22.39 0.21 -1.77 16 21 C -0.06 -0.53 10.04 22.24 0.22 -0.31 16 22 C -0.14 -1.21 10.02 22.34 0.22 -0.99 16 23 C 0.11 1.37 7.30 22.36 0.16 1.53 16 24 F -0.14 -1.83 17.27 44.97 0.78 -1.05 16 25 C -0.16 -2.15 9.41 22.43 0.21 -1.94 16 26 C -0.02 -0.42 10.81 83.46 0.90 0.48 16 27 C 0.04 1.12 7.35 22.58 0.17 1.28 16 28 O -0.47 -14.18 13.21 -92.63 -1.22 -15.40 16 29 H 0.05 2.23 6.67 -2.39 -0.02 2.21 16 30 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.07 3.96 6.07 -2.39 -0.01 3.95 16 32 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 33 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.09 2.77 5.92 -2.38 -0.01 2.75 16 35 H 0.07 2.65 6.44 -2.39 -0.02 2.63 16 36 H 0.14 2.47 7.64 -2.91 -0.02 2.45 16 37 H 0.18 0.56 8.06 -2.91 -0.02 0.53 16 38 H 0.17 0.56 8.06 -2.91 -0.02 0.54 16 39 H 0.16 1.50 6.65 -2.91 -0.02 1.48 16 40 H 0.23 2.68 6.96 -2.91 -0.02 2.66 16 41 H 0.41 8.48 9.07 -74.06 -0.67 7.81 16 Total: -1.00 -78.75 352.76 4.72 -74.03 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: 0.43 Total: 13.53 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: 5.82 Total: 12.28 kcal Atomic # 7 Polarization: -94.08 SS G_CDS: -3.08 Total: -97.16 kcal Atomic # 8 Polarization: -46.34 SS G_CDS: -1.26 Total: -47.60 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.78 Total: -1.05 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -78.75 4.72 -74.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283862338.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.334 kcal (2) G-P(sol) polarization free energy of solvation -78.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds