Wall clock time and date at job start Tue Mar 31 2020 17:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47384 * 2 1 4 4 N 1.46495 * 109.47290 * 179.97438 * 3 2 1 5 5 C 1.36907 * 120.00376 * 269.30200 * 4 3 2 6 6 H 1.07998 * 120.00060 * 192.68577 * 5 4 3 7 7 C 1.39017 * 120.00121 * 12.67449 * 5 4 3 8 8 N 1.31390 * 119.99556 * 18.63556 * 7 5 4 9 9 Si 1.86799 * 120.00443 * 198.63419 * 7 5 4 10 10 H 1.48507 * 109.47011 * 60.00144 * 9 7 5 11 11 H 1.48502 * 109.47220 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47270 * 300.00553 * 9 7 5 13 13 C 1.34785 * 119.99871 * 89.29544 * 4 3 2 14 14 O 1.21630 * 119.99926 * 184.03762 * 13 4 3 15 15 C 1.47371 * 119.99746 * 4.04313 * 13 4 3 16 16 N 1.32042 * 126.45359 * 353.84379 * 15 13 4 17 17 N 1.28452 * 110.21091 * 180.02562 * 16 15 13 18 18 C 1.40072 * 124.92862 * 180.02562 * 17 16 15 19 19 C 1.38906 * 120.05430 * 180.27930 * 18 17 16 20 20 C 1.38098 * 119.97839 * 180.25639 * 19 18 17 21 21 C 1.38274 * 120.09796 * 359.76364 * 20 19 18 22 22 C 1.38491 * 120.11122 * 359.97438 * 21 20 19 23 23 F 1.35098 * 119.99200 * 180.02562 * 22 21 20 24 24 C 1.38358 * 120.01748 * 0.02562 * 22 21 20 25 25 C 1.36137 * 110.13983 * 0.26049 * 17 16 15 26 26 C 1.35744 * 107.07303 * 359.57612 * 25 17 16 27 27 O 1.36069 * 127.25861 * 180.18276 * 26 25 17 28 28 H 1.09002 * 109.46902 * 299.99887 * 1 2 3 29 29 H 1.09002 * 109.47376 * 59.99666 * 1 2 3 30 30 H 1.08998 * 109.47247 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46902 * 240.00113 * 2 1 3 32 32 H 1.09003 * 109.46885 * 120.00526 * 2 1 3 33 33 H 1.09002 * 109.47009 * 60.00178 * 3 2 1 34 34 H 1.09002 * 109.47136 * 300.00481 * 3 2 1 35 35 H 0.97000 * 119.99818 * 179.97438 * 8 7 5 36 36 H 1.07997 * 120.01595 * 359.97438 * 19 18 17 37 37 H 1.08002 * 119.95456 * 179.74118 * 20 19 18 38 38 H 1.07995 * 119.94723 * 179.97438 * 21 20 19 39 39 H 1.08000 * 120.04434 * 180.02562 * 24 22 21 40 40 H 1.08005 * 126.46187 * 179.73127 * 25 17 16 41 41 H 0.96701 * 114.00407 * 270.26088 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1891 1.4570 1.1864 6 1 5.2493 1.6625 1.1957 7 6 3.5190 1.2076 2.3786 8 7 2.3493 0.6095 2.3619 9 14 4.2816 1.7226 4.0042 10 1 4.4886 3.1932 4.0100 11 1 3.3746 1.3455 5.1180 12 1 5.5881 1.0382 4.1770 13 6 4.1794 1.4279 -1.1663 14 8 5.3934 1.3537 -1.1662 15 6 3.4457 1.5020 -2.4423 16 7 2.1347 1.4716 -2.5963 17 7 1.8321 1.5568 -3.8418 18 6 0.5277 1.5543 -4.3523 19 6 0.3166 1.6458 -5.7221 20 6 -0.9702 1.6486 -6.2233 21 6 -2.0493 1.5553 -5.3638 22 6 -1.8432 1.4583 -3.9978 23 9 -2.8992 1.3668 -3.1602 24 6 -0.5559 1.4552 -3.4905 25 6 2.9634 1.6445 -4.5940 26 6 4.0153 1.6189 -3.7364 27 8 5.3372 1.6861 -4.0518 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 1.8818 0.4351 3.1938 36 1 1.1583 1.7195 -6.3948 37 1 -1.1341 1.7240 -7.2882 38 1 -3.0546 1.5581 -5.7583 39 1 -0.3946 1.3792 -2.4254 40 1 3.0143 1.7226 -5.6701 41 1 5.7482 0.8252 -4.2098 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283870661.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:26 Heat of formation + Delta-G solvation = 23.780649 kcal Electronic energy + Delta-G solvation = -29178.696611 eV Core-core repulsion = 24977.125257 eV Total energy + Delta-G solvation = -4201.571354 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.09381 -42.62186 -39.22589 -38.20752 -36.89977 -35.18194 -33.28356 -32.20769 -31.34547 -31.22869 -29.63285 -29.10891 -26.00409 -24.97378 -23.72909 -23.24476 -21.70625 -20.97601 -20.52128 -19.49576 -18.45641 -17.44745 -16.94270 -16.56505 -16.37323 -16.26237 -15.95068 -15.74107 -15.50801 -14.72123 -14.35015 -14.11434 -14.02520 -13.76531 -13.58554 -13.52751 -13.35018 -12.80839 -12.52068 -12.24228 -12.11525 -11.85871 -11.67780 -11.60115 -11.16252 -10.90566 -10.56181 -10.35705 -10.32781 -10.14435 -9.94445 -9.87552 -9.40093 -9.16219 -8.87990 -8.77179 -8.49829 -8.12905 -7.64171 -6.28234 -3.82566 0.49718 0.83700 2.13299 2.30458 2.41591 3.20450 3.23380 3.27858 3.34563 3.92661 4.05820 4.23566 4.34058 4.46449 4.62792 4.66839 4.85670 4.88824 4.96083 5.15566 5.22088 5.27357 5.60137 5.66581 5.73676 5.86814 5.92644 5.96101 6.14658 6.24341 6.38636 6.44578 6.52849 6.72246 6.88604 6.98207 7.10375 7.13692 7.40400 7.51250 7.97239 8.01565 8.06111 8.19250 8.55638 9.15592 9.38666 9.99066 10.58605 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012941 B = 0.004371 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.091000 B = 6403.868715 C = 8341.510811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.121 4.121 3 C 0.122 3.878 4 N -0.411 5.411 5 C -0.297 4.297 6 H 0.106 0.894 7 C 0.030 3.970 8 N -0.853 5.853 9 Si 0.929 3.071 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.272 1.272 13 C 0.499 3.501 14 O -0.582 6.582 15 C 0.028 3.972 16 N -0.253 5.253 17 N -0.253 5.253 18 C 0.189 3.811 19 C -0.149 4.149 20 C -0.066 4.066 21 C -0.167 4.167 22 C 0.126 3.874 23 F -0.131 7.131 24 C -0.157 4.157 25 C -0.051 4.051 26 C 0.048 3.952 27 O -0.453 6.453 28 H 0.050 0.950 29 H 0.031 0.969 30 H 0.036 0.964 31 H 0.022 0.978 32 H 0.116 0.884 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.269 0.731 36 H 0.139 0.861 37 H 0.143 0.857 38 H 0.140 0.860 39 H 0.160 0.840 40 H 0.183 0.817 41 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.034 0.229 -15.706 18.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.159 4.159 3 C -0.002 4.002 4 N -0.127 5.127 5 C -0.426 4.426 6 H 0.124 0.876 7 C -0.174 4.174 8 N -0.492 5.492 9 Si 0.755 3.245 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.197 1.197 13 C 0.287 3.713 14 O -0.466 6.466 15 C -0.135 4.135 16 N -0.084 5.084 17 N -0.034 5.034 18 C 0.097 3.903 19 C -0.170 4.170 20 C -0.085 4.085 21 C -0.186 4.186 22 C 0.106 3.894 23 F -0.109 7.109 24 C -0.178 4.178 25 C -0.190 4.190 26 C -0.007 4.007 27 O -0.258 6.258 28 H 0.069 0.931 29 H 0.050 0.950 30 H 0.055 0.945 31 H 0.040 0.960 32 H 0.134 0.866 33 H 0.100 0.900 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.157 0.843 37 H 0.160 0.840 38 H 0.158 0.842 39 H 0.178 0.822 40 H 0.200 0.800 41 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -10.691 0.674 -14.880 18.335 hybrid contribution 0.743 -0.306 0.379 0.888 sum -9.948 0.368 -14.501 17.589 Atomic orbital electron populations 1.21598 0.97948 0.99495 0.99851 1.22039 0.93352 0.98073 1.02456 1.21786 0.79540 0.97807 1.01071 1.43767 1.06272 1.58342 1.04337 1.19822 0.95675 1.44975 0.82093 0.87623 1.25369 0.96437 0.95742 0.99843 1.70083 1.15001 1.36475 1.27689 0.85956 0.78877 0.79404 0.80279 1.19846 1.20862 1.19720 1.16495 0.86468 0.87279 0.81101 1.90637 1.12537 1.57795 1.85655 1.23310 0.88875 1.04423 0.96934 1.74235 1.16040 1.20817 0.97338 1.42450 1.03943 1.52366 1.04656 1.17244 0.80804 1.00061 0.92207 1.20907 0.98809 1.04930 0.92361 1.20775 0.90556 0.96992 1.00127 1.21212 1.01034 1.05036 0.91364 1.17361 0.83229 1.01041 0.87734 1.91544 1.54883 1.93330 1.71173 1.21083 0.89697 1.04290 1.02718 1.22756 0.85653 1.11820 0.98742 1.18163 0.85008 1.07638 0.89929 1.84856 1.17009 1.33503 1.90404 0.93076 0.94974 0.94491 0.95966 0.86594 0.89977 0.91355 0.92043 0.84325 0.83950 0.84200 0.82234 0.79996 0.75970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.44 9.91 37.16 0.37 -2.07 16 2 C -0.12 -2.70 5.35 -26.73 -0.14 -2.84 16 3 C 0.12 2.88 4.21 -4.05 -0.02 2.86 16 4 N -0.41 -10.94 2.62 -116.05 -0.30 -11.24 16 5 C -0.30 -8.23 9.41 -15.00 -0.14 -8.37 16 6 H 0.11 3.06 7.32 -52.49 -0.38 2.68 16 7 C 0.03 0.77 5.01 -17.45 -0.09 0.68 16 8 N -0.85 -21.38 7.79 55.50 0.43 -20.95 16 9 Si 0.93 20.23 29.59 -169.99 -5.03 15.20 16 10 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 11 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 12 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 13 C 0.50 13.19 7.62 -12.54 -0.10 13.10 16 14 O -0.58 -16.85 16.17 3.43 0.06 -16.79 16 15 C 0.03 0.61 6.84 -82.67 -0.57 0.04 16 16 N -0.25 -4.96 6.99 33.45 0.23 -4.73 16 17 N -0.25 -4.04 3.52 -10.41 -0.04 -4.08 16 18 C 0.19 2.49 6.66 -83.63 -0.56 1.93 16 19 C -0.15 -1.38 9.43 -39.39 -0.37 -1.76 16 20 C -0.07 -0.48 10.04 -39.62 -0.40 -0.88 16 21 C -0.17 -1.43 10.02 -39.47 -0.40 -1.83 16 22 C 0.13 1.46 7.30 -39.44 -0.29 1.17 16 23 F -0.13 -1.63 17.27 2.25 0.04 -1.59 16 24 C -0.16 -2.14 9.57 -39.33 -0.38 -2.51 16 25 C -0.05 -0.74 10.81 -16.53 -0.18 -0.92 16 26 C 0.05 0.89 7.35 -39.08 -0.29 0.60 16 27 O -0.45 -7.95 13.21 -21.78 -0.29 -8.24 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.03 0.55 5.74 -51.93 -0.30 0.25 16 30 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.02 0.50 7.79 -51.93 -0.40 0.10 16 32 H 0.12 2.91 5.50 -51.93 -0.29 2.62 16 33 H 0.08 2.05 6.34 -51.93 -0.33 1.72 16 34 H 0.07 1.55 4.89 -51.93 -0.25 1.29 16 35 H 0.27 6.39 8.31 -40.82 -0.34 6.05 16 36 H 0.14 0.96 6.64 -52.49 -0.35 0.61 16 37 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 38 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 39 H 0.16 2.47 5.24 -52.49 -0.28 2.19 16 40 H 0.18 1.78 6.96 -52.48 -0.37 1.42 16 41 H 0.39 5.05 9.07 45.56 0.41 5.46 16 LS Contribution 344.20 15.07 5.19 5.19 Total: -1.00 -32.45 344.20 -6.60 -39.05 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -3.36 Total: 8.98 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: -3.53 Total: -0.79 kcal Atomic # 7 Polarization: -41.32 SS G_CDS: 0.33 Total: -41.00 kcal Atomic # 8 Polarization: -24.80 SS G_CDS: -0.23 Total: -25.03 kcal Atomic # 9 Polarization: -1.63 SS G_CDS: 0.04 Total: -1.59 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.03 Total: 15.20 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.45 -6.60 -39.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283870661.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.834 kcal (2) G-P(sol) polarization free energy of solvation -32.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds