Wall clock time and date at job start Tue Mar 31 2020 17:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47384 * 2 1 4 4 N 1.46495 * 109.47290 * 179.97438 * 3 2 1 5 5 C 1.36907 * 120.00376 * 269.30200 * 4 3 2 6 6 H 1.07998 * 120.00060 * 192.68577 * 5 4 3 7 7 C 1.39017 * 120.00121 * 12.67449 * 5 4 3 8 8 N 1.31390 * 119.99556 * 18.63556 * 7 5 4 9 9 Si 1.86799 * 120.00443 * 198.63419 * 7 5 4 10 10 H 1.48507 * 109.47011 * 60.00144 * 9 7 5 11 11 H 1.48502 * 109.47220 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47270 * 300.00553 * 9 7 5 13 13 C 1.34785 * 119.99871 * 89.29544 * 4 3 2 14 14 O 1.21630 * 119.99926 * 184.03762 * 13 4 3 15 15 C 1.47371 * 119.99746 * 4.04313 * 13 4 3 16 16 N 1.32042 * 126.45359 * 353.84379 * 15 13 4 17 17 N 1.28452 * 110.21091 * 180.02562 * 16 15 13 18 18 C 1.40072 * 124.92862 * 180.02562 * 17 16 15 19 19 C 1.38906 * 120.05430 * 180.27930 * 18 17 16 20 20 C 1.38098 * 119.97839 * 180.25639 * 19 18 17 21 21 C 1.38274 * 120.09796 * 359.76364 * 20 19 18 22 22 C 1.38491 * 120.11122 * 359.97438 * 21 20 19 23 23 F 1.35098 * 119.99200 * 180.02562 * 22 21 20 24 24 C 1.38358 * 120.01748 * 0.02562 * 22 21 20 25 25 C 1.36137 * 110.13983 * 0.26049 * 17 16 15 26 26 C 1.35744 * 107.07303 * 359.57612 * 25 17 16 27 27 O 1.36069 * 127.25861 * 180.18276 * 26 25 17 28 28 H 1.09002 * 109.46902 * 299.99887 * 1 2 3 29 29 H 1.09002 * 109.47376 * 59.99666 * 1 2 3 30 30 H 1.08998 * 109.47247 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46902 * 240.00113 * 2 1 3 32 32 H 1.09003 * 109.46885 * 120.00526 * 2 1 3 33 33 H 1.09002 * 109.47009 * 60.00178 * 3 2 1 34 34 H 1.09002 * 109.47136 * 300.00481 * 3 2 1 35 35 H 0.97000 * 119.99818 * 179.97438 * 8 7 5 36 36 H 1.07997 * 120.01595 * 359.97438 * 19 18 17 37 37 H 1.08002 * 119.95456 * 179.74118 * 20 19 18 38 38 H 1.07995 * 119.94723 * 179.97438 * 21 20 19 39 39 H 1.08000 * 120.04434 * 180.02562 * 24 22 21 40 40 H 1.08005 * 126.46187 * 179.73127 * 25 17 16 41 41 H 0.96701 * 114.00407 * 270.26088 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1891 1.4570 1.1864 6 1 5.2493 1.6625 1.1957 7 6 3.5190 1.2076 2.3786 8 7 2.3493 0.6095 2.3619 9 14 4.2816 1.7226 4.0042 10 1 4.4886 3.1932 4.0100 11 1 3.3746 1.3455 5.1180 12 1 5.5881 1.0382 4.1770 13 6 4.1794 1.4279 -1.1663 14 8 5.3934 1.3537 -1.1662 15 6 3.4457 1.5020 -2.4423 16 7 2.1347 1.4716 -2.5963 17 7 1.8321 1.5568 -3.8418 18 6 0.5277 1.5543 -4.3523 19 6 0.3166 1.6458 -5.7221 20 6 -0.9702 1.6486 -6.2233 21 6 -2.0493 1.5553 -5.3638 22 6 -1.8432 1.4583 -3.9978 23 9 -2.8992 1.3668 -3.1602 24 6 -0.5559 1.4552 -3.4905 25 6 2.9634 1.6445 -4.5940 26 6 4.0153 1.6189 -3.7364 27 8 5.3372 1.6861 -4.0518 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 1.8818 0.4351 3.1938 36 1 1.1583 1.7195 -6.3948 37 1 -1.1341 1.7240 -7.2882 38 1 -3.0546 1.5581 -5.7583 39 1 -0.3946 1.3792 -2.4254 40 1 3.0143 1.7226 -5.6701 41 1 5.7482 0.8252 -4.2098 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283870661.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:25 Heat of formation + Delta-G solvation = 2.068406 kcal Electronic energy + Delta-G solvation = -29179.638125 eV Core-core repulsion = 24977.125257 eV Total energy + Delta-G solvation = -4202.512868 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.98433 -43.95770 -40.44071 -39.80499 -38.22523 -37.15977 -34.56036 -33.92814 -33.25097 -32.18577 -30.82900 -30.27009 -27.82168 -26.70623 -25.16212 -24.17818 -22.99445 -22.40677 -22.03977 -21.05943 -19.70699 -18.89805 -18.63880 -18.02159 -17.41882 -17.31700 -17.08822 -16.88526 -16.60898 -16.49664 -15.93340 -15.56993 -15.48603 -15.27074 -15.15017 -14.84587 -14.56502 -14.25409 -13.88706 -13.70533 -13.42567 -13.25787 -13.03495 -12.86133 -12.70309 -12.53671 -12.26899 -12.10565 -12.01913 -11.94198 -11.50125 -11.21371 -11.03135 -10.78536 -10.53102 -10.13417 -9.96199 -9.64638 -9.26754 -8.24655 -5.91813 -0.43582 0.05254 0.72803 1.07398 1.24504 1.41345 1.44707 1.52417 2.24520 2.39737 2.54751 2.83173 3.08399 3.12995 3.27752 3.60755 3.73152 3.85846 3.91268 3.98338 4.05770 4.21579 4.41929 4.45708 4.56083 4.60884 4.77316 4.83577 4.94427 4.95749 5.03627 5.16535 5.20180 5.21167 5.30279 5.32860 5.40501 5.58374 5.62935 5.91450 6.03450 6.10410 6.51056 6.77956 6.82946 7.12954 7.39655 7.98862 8.60304 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012941 B = 0.004371 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.091000 B = 6403.868715 C = 8341.510811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.106 4.106 3 C 0.133 3.867 4 N -0.427 5.427 5 C -0.349 4.349 6 H 0.077 0.923 7 C 0.004 3.996 8 N -0.858 5.858 9 Si 0.993 3.007 10 H -0.273 1.273 11 H -0.265 1.265 12 H -0.275 1.275 13 C 0.487 3.513 14 O -0.625 6.625 15 C -0.022 4.022 16 N -0.263 5.263 17 N -0.240 5.240 18 C 0.148 3.852 19 C -0.128 4.128 20 C -0.049 4.049 21 C -0.145 4.145 22 C 0.105 3.895 23 F -0.143 7.143 24 C -0.178 4.178 25 C -0.012 4.012 26 C 0.022 3.978 27 O -0.465 6.465 28 H 0.049 0.951 29 H 0.045 0.955 30 H 0.052 0.948 31 H 0.008 0.992 32 H 0.089 0.911 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.276 0.724 36 H 0.174 0.826 37 H 0.193 0.807 38 H 0.171 0.829 39 H 0.129 0.871 40 H 0.243 0.757 41 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.799 0.448 -19.509 23.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.145 4.145 3 C 0.010 3.990 4 N -0.142 5.142 5 C -0.477 4.477 6 H 0.095 0.905 7 C -0.199 4.199 8 N -0.495 5.495 9 Si 0.816 3.184 10 H -0.198 1.198 11 H -0.189 1.189 12 H -0.200 1.200 13 C 0.276 3.724 14 O -0.513 6.513 15 C -0.182 4.182 16 N -0.097 5.097 17 N -0.023 5.023 18 C 0.058 3.942 19 C -0.148 4.148 20 C -0.068 4.068 21 C -0.164 4.164 22 C 0.085 3.915 23 F -0.121 7.121 24 C -0.198 4.198 25 C -0.152 4.152 26 C -0.034 4.034 27 O -0.272 6.272 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.027 0.973 32 H 0.107 0.893 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.191 0.809 37 H 0.210 0.790 38 H 0.189 0.811 39 H 0.147 0.853 40 H 0.259 0.741 41 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -13.517 0.873 -18.669 23.065 hybrid contribution 1.375 -0.399 1.301 1.934 sum -12.142 0.474 -17.368 21.197 Atomic orbital electron populations 1.21483 0.95020 1.00764 1.00488 1.21814 0.95755 0.96660 1.00256 1.21737 0.78277 0.98504 1.00472 1.43973 1.07190 1.58739 1.04327 1.19740 0.95160 1.48923 0.83870 0.90478 1.26096 0.96988 0.94740 1.02126 1.70188 1.15297 1.35305 1.28755 0.85020 0.78139 0.78756 0.76498 1.19786 1.18917 1.20007 1.17163 0.86493 0.86143 0.82597 1.90555 1.14401 1.59442 1.86872 1.22802 0.90227 1.08788 0.96409 1.74000 1.14951 1.20796 0.99905 1.42771 1.05748 1.50071 1.03674 1.17665 0.78976 1.03653 0.93950 1.21409 1.01051 1.01851 0.90488 1.21380 0.88933 0.94206 1.02235 1.21692 1.03293 1.01710 0.89717 1.17600 0.82173 1.02632 0.89068 1.91513 1.55136 1.93619 1.71879 1.20985 0.91307 1.05937 1.01621 1.23412 0.83299 1.07976 1.00483 1.18355 0.86133 1.09653 0.89243 1.84803 1.17155 1.35048 1.90190 0.93190 0.93590 0.92848 0.97331 0.89302 0.91890 0.90352 0.91388 0.80853 0.78984 0.81109 0.85329 0.74065 0.74284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.55 9.91 71.98 0.71 -3.84 16 2 C -0.11 -5.00 5.35 30.59 0.16 -4.83 16 3 C 0.13 6.71 4.21 86.38 0.36 7.08 16 4 N -0.43 -24.49 2.62 -639.32 -1.67 -26.17 16 5 C -0.35 -20.87 9.41 84.09 0.79 -20.08 16 6 H 0.08 4.91 7.32 -2.91 -0.02 4.89 16 7 C 0.00 0.23 5.01 84.95 0.43 0.65 16 8 N -0.86 -44.67 7.79 21.68 0.17 -44.50 16 9 Si 0.99 42.99 29.59 68.60 2.03 45.02 16 10 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 11 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 12 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 13 C 0.49 27.80 7.62 86.65 0.66 28.46 16 14 O -0.63 -39.23 16.17 -2.38 -0.04 -39.27 16 15 C -0.02 -1.01 6.84 42.42 0.29 -0.72 16 16 N -0.26 -10.59 6.99 -48.07 -0.34 -10.93 16 17 N -0.24 -7.31 3.52 -186.84 -0.66 -7.97 16 18 C 0.15 3.48 6.66 38.12 0.25 3.73 16 19 C -0.13 -1.61 9.43 22.40 0.21 -1.40 16 20 C -0.05 -0.38 10.04 22.25 0.22 -0.16 16 21 C -0.15 -1.73 10.02 22.34 0.22 -1.51 16 22 C 0.11 2.19 7.30 22.36 0.16 2.36 16 23 F -0.14 -3.40 17.27 44.97 0.78 -2.63 16 24 C -0.18 -4.65 9.57 22.43 0.21 -4.44 16 25 C -0.01 -0.31 10.81 83.45 0.90 0.59 16 26 C 0.02 0.80 7.35 22.59 0.17 0.96 16 27 O -0.46 -16.52 13.21 -92.59 -1.22 -17.74 16 28 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.05 1.61 5.74 -2.39 -0.01 1.60 16 30 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.01 0.39 7.79 -2.39 -0.02 0.37 16 32 H 0.09 4.70 5.50 -2.39 -0.01 4.69 16 33 H 0.06 3.35 6.34 -2.39 -0.02 3.33 16 34 H 0.08 3.78 4.89 -2.39 -0.01 3.76 16 35 H 0.28 13.32 8.31 -92.71 -0.77 12.55 16 36 H 0.17 0.99 6.64 -2.91 -0.02 0.97 16 37 H 0.19 -0.23 8.06 -2.91 -0.02 -0.25 16 38 H 0.17 1.04 8.06 -2.91 -0.02 1.01 16 39 H 0.13 4.12 5.24 -2.91 -0.02 4.10 16 40 H 0.24 3.16 6.96 -2.91 -0.02 3.14 16 41 H 0.40 10.72 9.07 -74.06 -0.67 10.05 16 Total: -1.00 -80.88 344.20 5.25 -75.63 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: 0.45 Total: 21.71 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: 5.77 Total: 6.85 kcal Atomic # 7 Polarization: -87.07 SS G_CDS: -2.50 Total: -89.57 kcal Atomic # 8 Polarization: -55.75 SS G_CDS: -1.26 Total: -57.01 kcal Atomic # 9 Polarization: -3.40 SS G_CDS: 0.78 Total: -2.63 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -80.88 5.25 -75.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283870661.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.695 kcal (2) G-P(sol) polarization free energy of solvation -80.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds