Wall clock time and date at job start Tue Mar 31 2020 17:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47093 * 60.00099 * 9 7 5 11 11 H 1.48503 * 109.47086 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47388 * 300.00253 * 9 7 5 13 13 N 1.46490 * 109.47115 * 64.99762 * 3 2 1 14 14 C 1.34777 * 120.00429 * 275.00047 * 13 3 2 15 15 O 1.21604 * 119.99560 * 0.02562 * 14 13 3 16 16 C 1.47479 * 120.00694 * 180.02562 * 14 13 3 17 17 N 1.31997 * 126.44174 * 0.02734 * 16 14 13 18 18 N 1.28457 * 110.21941 * 179.97438 * 17 16 14 19 19 C 1.40090 * 124.93272 * 179.97438 * 18 17 16 20 20 C 1.38893 * 120.05896 * 0.02562 * 19 18 17 21 21 C 1.38098 * 119.98336 * 179.97438 * 20 19 18 22 22 C 1.38271 * 120.09400 * 359.97438 * 21 20 19 23 23 C 1.38484 * 120.11207 * 359.97438 * 22 21 20 24 24 F 1.35103 * 119.99275 * 180.02562 * 23 22 21 25 25 C 1.38359 * 120.01855 * 359.78904 * 23 22 21 26 26 C 1.36115 * 110.12689 * 359.97438 * 18 17 16 27 27 C 1.35755 * 107.06426 * 359.76716 * 26 18 17 28 28 O 1.36071 * 127.26363 * 180.22899 * 27 26 18 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 32 32 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 33 33 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 34 34 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 35 35 H 0.97001 * 120.00176 * 95.00254 * 13 3 2 36 36 H 1.08006 * 120.00598 * 359.97438 * 20 19 18 37 37 H 1.08002 * 119.95549 * 180.02562 * 21 20 19 38 38 H 1.07996 * 119.94418 * 180.02562 * 22 21 20 39 39 H 1.08009 * 120.04888 * 180.25021 * 25 23 22 40 40 H 1.07999 * 126.46605 * 180.02562 * 26 18 17 41 41 H 0.96705 * 113.99877 * 270.15811 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5975 0.1474 -0.2348 11 1 6.3979 0.2166 -2.6503 12 1 6.4995 2.2815 -1.3821 13 7 1.6524 2.0975 1.2517 14 6 0.4351 2.6644 1.3669 15 8 -0.3417 2.6318 0.4318 16 6 0.0451 3.3243 2.6268 17 7 0.7832 3.4342 3.7156 18 7 0.1376 4.0680 4.6275 19 6 0.6313 4.3565 5.9064 20 6 1.9095 3.9496 6.2669 21 6 2.3948 4.2353 7.5278 22 6 1.6102 4.9265 8.4325 23 6 0.3356 5.3350 8.0769 24 9 -0.4288 6.0107 8.9626 25 6 -0.1534 5.0555 6.8132 26 6 -1.0957 4.4184 4.1706 27 6 -1.1910 3.9661 2.8942 28 8 -2.2504 4.0978 2.0504 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 1.8934 -0.5137 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 3.8293 -0.0604 -2.9502 35 1 2.2719 2.1232 1.9977 36 1 2.5237 3.4100 5.5611 37 1 3.3889 3.9191 7.8075 38 1 1.9923 5.1490 9.4178 39 1 -1.1459 5.3774 6.5339 40 1 -1.8536 4.9585 4.7186 41 1 -2.8882 3.3728 2.1038 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286232389.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:29 Heat of formation + Delta-G solvation = -31.718588 kcal Electronic energy + Delta-G solvation = -27782.814265 eV Core-core repulsion = 23578.836284 eV Total energy + Delta-G solvation = -4203.977982 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 4.63 seconds Orbital eigenvalues (eV) -50.00909 -44.11272 -40.64205 -39.93112 -38.27177 -36.89708 -34.71188 -34.17910 -32.79294 -32.16562 -31.05664 -30.28382 -28.93269 -26.07698 -24.85898 -24.36776 -23.08858 -22.31522 -21.79477 -21.03255 -20.11346 -19.09037 -18.63227 -17.75641 -17.52289 -17.47136 -17.17559 -17.04147 -16.75367 -16.61884 -16.15692 -16.01838 -15.53344 -15.37583 -14.91584 -14.75344 -14.57162 -14.27271 -13.94109 -13.55136 -13.38950 -13.20784 -13.16822 -12.92233 -12.78252 -12.65427 -12.43256 -12.19433 -12.08507 -11.61259 -11.57938 -11.20414 -11.07403 -10.93172 -10.52815 -10.26226 -10.04312 -9.70630 -9.35978 -8.15860 -6.33296 -0.53906 -0.00566 0.57699 0.95412 1.05190 1.44998 1.47272 1.55032 2.29298 2.34414 2.48319 2.50611 2.88672 3.13252 3.19968 3.42555 3.67591 3.71133 3.81513 3.95685 4.02972 4.22036 4.34049 4.45404 4.49801 4.57099 4.74665 4.79734 4.91726 4.94845 5.05761 5.09874 5.20334 5.25596 5.43258 5.50335 5.52886 5.59286 5.77676 5.80235 5.90256 6.15393 6.51849 6.72178 6.73728 6.94651 7.30083 7.46991 8.89550 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.013821 B = 0.002980 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.412514 B = 9393.390754 C =11006.314369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.120 4.120 3 C 0.278 3.722 4 H 0.002 0.998 5 C -0.552 4.552 6 H 0.068 0.932 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.971 3.029 10 H -0.264 1.264 11 H -0.284 1.284 12 H -0.273 1.273 13 N -0.690 5.690 14 C 0.583 3.417 15 O -0.562 6.562 16 C -0.040 4.040 17 N -0.253 5.253 18 N -0.226 5.226 19 C 0.143 3.857 20 C -0.129 4.129 21 C -0.059 4.059 22 C -0.142 4.142 23 C 0.114 3.886 24 F -0.134 7.134 25 C -0.160 4.160 26 C -0.022 4.022 27 C 0.038 3.962 28 O -0.464 6.464 29 H 0.048 0.952 30 H 0.029 0.971 31 H 0.039 0.961 32 H 0.039 0.961 33 H 0.076 0.924 34 H 0.266 0.734 35 H 0.403 0.597 36 H 0.141 0.859 37 H 0.176 0.824 38 H 0.171 0.829 39 H 0.165 0.835 40 H 0.234 0.766 41 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.870 8.377 25.116 27.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.159 4.159 3 C 0.176 3.824 4 H 0.020 0.980 5 C -0.590 4.590 6 H 0.086 0.914 7 C -0.182 4.182 8 N -0.551 5.551 9 Si 0.795 3.205 10 H -0.188 1.188 11 H -0.209 1.209 12 H -0.198 1.198 13 N -0.339 5.339 14 C 0.368 3.632 15 O -0.440 6.440 16 C -0.201 4.201 17 N -0.088 5.088 18 N -0.010 5.010 19 C 0.053 3.947 20 C -0.149 4.149 21 C -0.077 4.077 22 C -0.160 4.160 23 C 0.094 3.906 24 F -0.113 7.113 25 C -0.181 4.181 26 C -0.162 4.162 27 C -0.017 4.017 28 O -0.272 6.272 29 H 0.067 0.933 30 H 0.048 0.952 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.094 0.906 34 H 0.075 0.925 35 H 0.237 0.763 36 H 0.159 0.841 37 H 0.193 0.807 38 H 0.188 0.812 39 H 0.182 0.818 40 H 0.251 0.749 41 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -5.130 8.519 24.551 26.489 hybrid contribution -0.202 -0.214 -0.616 0.683 sum -5.332 8.305 23.936 25.890 Atomic orbital electron populations 1.21677 0.96833 0.99325 1.00237 1.21782 0.93921 0.98791 1.01400 1.18474 0.93879 0.89354 0.80733 0.97965 1.21514 0.91287 1.39312 1.06884 0.91386 1.25753 1.03414 0.94222 0.94854 1.70033 1.37155 1.38134 1.09771 0.85419 0.78963 0.78418 0.77667 1.18837 1.20932 1.19803 1.46189 1.14767 1.55018 1.17878 1.17132 0.82514 0.78388 0.85188 1.90769 1.52501 1.61023 1.39713 1.22690 0.96275 1.06913 0.94247 1.73593 1.23664 1.14322 0.97200 1.42440 1.10935 1.37888 1.09689 1.17499 0.95278 1.01320 0.80575 1.21288 0.93520 1.01134 0.98972 1.21277 1.01225 0.94819 0.90404 1.21671 0.92131 0.99334 1.02909 1.17338 0.90494 0.96000 0.86740 1.91546 1.75186 1.77541 1.67010 1.20826 1.02495 1.02405 0.92416 1.23429 0.90549 1.07134 0.95054 1.18293 0.89616 1.03450 0.90359 1.84850 1.32932 1.49576 1.59812 0.93267 0.95152 0.94181 0.94200 0.90569 0.92462 0.76280 0.84148 0.80691 0.81166 0.81782 0.74938 0.73693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.68 8.51 71.98 0.61 -5.06 16 2 C -0.12 -6.07 5.45 30.60 0.17 -5.91 16 3 C 0.28 14.88 2.24 44.25 0.10 14.98 16 4 H 0.00 0.15 7.58 -2.39 -0.02 0.14 16 5 C -0.55 -30.17 8.73 25.60 0.22 -29.94 16 6 H 0.07 3.53 7.74 -2.91 -0.02 3.50 16 7 C 0.02 0.98 5.29 84.66 0.45 1.43 16 8 N -0.91 -52.69 11.29 21.45 0.24 -52.44 16 9 Si 0.97 42.63 29.54 68.60 2.03 44.66 16 10 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 11 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 12 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 13 N -0.69 -31.55 5.02 -449.32 -2.25 -33.80 16 14 C 0.58 26.02 6.38 86.68 0.55 26.57 16 15 O -0.56 -28.34 13.66 -1.90 -0.03 -28.36 16 16 C -0.04 -1.45 7.13 42.44 0.30 -1.15 16 17 N -0.25 -7.90 10.84 -48.05 -0.52 -8.42 16 18 N -0.23 -5.47 3.52 -186.85 -0.66 -6.13 16 19 C 0.14 2.65 6.66 38.11 0.25 2.91 16 20 C -0.13 -2.14 9.59 22.39 0.21 -1.92 16 21 C -0.06 -0.58 10.04 22.24 0.22 -0.36 16 22 C -0.14 -1.27 10.02 22.34 0.22 -1.05 16 23 C 0.11 1.40 7.30 22.36 0.16 1.57 16 24 F -0.13 -1.82 17.27 44.97 0.78 -1.04 16 25 C -0.16 -2.17 9.41 22.43 0.21 -1.96 16 26 C -0.02 -0.47 10.81 83.45 0.90 0.44 16 27 C 0.04 1.14 7.35 22.58 0.17 1.31 16 28 O -0.46 -13.43 13.20 -92.21 -1.22 -14.65 16 29 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.03 1.49 7.84 -2.39 -0.02 1.47 16 31 H 0.04 1.79 5.64 -2.38 -0.01 1.78 16 32 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.08 4.25 5.95 -2.39 -0.01 4.24 16 34 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 35 H 0.40 16.71 8.26 -92.71 -0.77 15.95 16 36 H 0.14 2.64 7.64 -2.91 -0.02 2.61 16 37 H 0.18 0.71 8.06 -2.91 -0.02 0.68 16 38 H 0.17 0.61 8.06 -2.91 -0.02 0.59 16 39 H 0.16 1.50 6.65 -2.91 -0.02 1.49 16 40 H 0.23 2.61 6.96 -2.91 -0.02 2.59 16 41 H 0.41 8.09 9.07 -74.05 -0.67 7.42 16 Total: -1.00 -74.01 354.60 2.81 -71.20 By element: Atomic # 1 Polarization: 27.47 SS G_CDS: -0.32 Total: 27.15 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: 4.76 Total: 1.84 kcal Atomic # 7 Polarization: -97.61 SS G_CDS: -3.19 Total: -100.80 kcal Atomic # 8 Polarization: -41.77 SS G_CDS: -1.24 Total: -43.01 kcal Atomic # 9 Polarization: -1.82 SS G_CDS: 0.78 Total: -1.04 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -74.01 2.81 -71.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286232389.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.478 kcal (2) G-P(sol) polarization free energy of solvation -74.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.63 seconds