Wall clock time and date at job start Tue Mar 31 2020 17:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31511 * 119.99697 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99856 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47576 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47046 * 119.99929 * 9 7 5 12 12 H 1.48498 * 109.47240 * 239.99731 * 9 7 5 13 13 N 1.46501 * 109.47135 * 295.00335 * 3 2 1 14 14 C 1.34777 * 120.00027 * 84.99801 * 13 3 2 15 15 O 1.21600 * 119.99885 * 0.02562 * 14 13 3 16 16 C 1.47479 * 120.00214 * 179.97438 * 14 13 3 17 17 N 1.31994 * 126.44184 * 359.69211 * 16 14 13 18 18 N 1.28453 * 110.21939 * 179.87791 * 17 16 14 19 19 C 1.40098 * 124.93633 * 180.19449 * 18 17 16 20 20 C 1.38900 * 120.05551 * 0.22182 * 19 18 17 21 21 C 1.38098 * 119.98152 * 180.02562 * 20 19 18 22 22 C 1.38267 * 120.09528 * 0.02562 * 21 20 19 23 23 C 1.38489 * 120.11220 * 359.97438 * 22 21 20 24 24 F 1.35102 * 119.99023 * 180.02562 * 23 22 21 25 25 C 1.38362 * 120.01737 * 359.76574 * 23 22 21 26 26 C 1.36116 * 110.13251 * 0.38725 * 18 17 16 27 27 C 1.35757 * 107.05561 * 359.76941 * 26 18 17 28 28 O 1.36074 * 127.26285 * 179.97438 * 27 26 18 29 29 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 32 32 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 33 33 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 34 34 H 0.97005 * 119.99685 * 180.02562 * 8 7 5 35 35 H 0.96998 * 120.00208 * 264.99507 * 13 3 2 36 36 H 1.07997 * 120.00542 * 0.02861 * 20 19 18 37 37 H 1.07990 * 119.95223 * 180.02562 * 21 20 19 38 38 H 1.08003 * 119.94825 * 180.02562 * 22 21 20 39 39 H 1.08004 * 120.04894 * 180.25104 * 25 23 22 40 40 H 1.07999 * 126.47610 * 179.74162 * 26 18 17 41 41 H 0.96704 * 114.00086 * 270.04306 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.5988 1.5443 0.1931 11 1 6.4000 1.6156 2.6091 12 1 6.4962 -0.5190 1.4625 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3413 2.6326 -0.4315 16 6 0.0451 3.3243 -2.6268 17 7 0.7851 3.4387 -3.7138 18 7 0.1378 4.0682 -4.6273 19 6 0.6315 4.3568 -5.9063 20 6 1.9098 3.9502 -6.2667 21 6 2.3951 4.2359 -7.5276 22 6 1.6104 4.9269 -8.4324 23 6 0.3352 5.3341 -8.0772 24 9 -0.4296 6.0086 -8.9634 25 6 -0.1576 5.0456 -6.8170 26 6 -1.0959 4.4181 -4.1709 27 6 -1.1934 3.9607 -2.8964 28 8 -2.2552 4.0866 -2.0548 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 3.8293 -0.0605 2.9501 35 1 2.2718 2.1232 -1.9978 36 1 2.5240 3.4108 -5.5609 37 1 3.3889 3.9193 -7.8074 38 1 1.9921 5.1487 -9.4180 39 1 -1.1535 5.3594 -6.5409 40 1 -1.8539 4.9580 -4.7188 41 1 -2.2347 4.8871 -1.5128 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286232401.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:46 Heat of formation + Delta-G solvation = -9.126586 kcal Electronic energy + Delta-G solvation = -27779.838547 eV Core-core repulsion = 23576.840228 eV Total energy + Delta-G solvation = -4202.998319 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 4.35 seconds Orbital eigenvalues (eV) -49.40680 -43.04932 -39.51242 -38.65719 -37.19532 -34.99195 -33.69060 -32.31885 -31.44450 -31.00027 -30.02039 -29.33317 -27.02264 -24.80226 -23.70704 -22.98341 -21.99332 -21.39354 -20.17153 -19.26057 -19.16479 -17.66929 -17.56632 -16.81555 -16.58421 -16.43064 -16.12979 -15.93495 -15.68358 -15.24481 -14.64901 -14.38660 -14.32781 -14.26663 -14.03001 -13.63203 -13.18132 -12.79702 -12.65675 -12.50216 -12.01079 -11.99219 -11.67695 -11.48582 -11.23729 -10.95142 -10.83198 -10.46402 -10.30121 -10.29337 -10.12704 -9.60481 -9.42935 -9.25692 -9.21786 -9.01351 -8.49542 -8.48466 -7.79779 -6.10739 -4.19686 0.21951 0.58983 1.77159 1.88354 1.99650 3.08828 3.24899 3.32738 3.35576 3.60549 3.83086 3.93789 4.05221 4.28641 4.37202 4.40797 4.46763 4.56623 4.68545 4.85638 4.98917 5.20665 5.29818 5.40377 5.50947 5.55892 5.70223 5.78755 6.10227 6.16952 6.44393 6.51714 6.61587 6.70987 7.09667 7.23040 7.38578 7.45041 7.59404 7.64815 7.68006 7.79763 7.92944 8.19605 8.68275 8.78808 9.10846 9.47217 10.94752 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.013822 B = 0.002979 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.227852 B = 9397.396249 C =11001.917337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.052 0.948 5 C -0.532 4.532 6 H 0.062 0.938 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.690 5.690 14 C 0.583 3.417 15 O -0.527 6.527 16 C 0.001 3.999 17 N -0.247 5.247 18 N -0.238 5.238 19 C 0.179 3.821 20 C -0.120 4.120 21 C -0.065 4.065 22 C -0.158 4.158 23 C 0.124 3.876 24 F -0.132 7.132 25 C -0.170 4.170 26 C -0.048 4.048 27 C 0.057 3.943 28 O -0.450 6.450 29 H 0.051 0.949 30 H 0.023 0.977 31 H 0.038 0.962 32 H 0.100 0.900 33 H 0.031 0.969 34 H 0.264 0.736 35 H 0.394 0.606 36 H 0.153 0.847 37 H 0.147 0.853 38 H 0.143 0.857 39 H 0.146 0.854 40 H 0.188 0.812 41 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.277 10.361 -20.491 23.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.069 0.931 5 C -0.571 4.571 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.337 5.337 14 C 0.365 3.635 15 O -0.403 6.403 16 C -0.163 4.163 17 N -0.080 5.080 18 N -0.021 5.021 19 C 0.087 3.913 20 C -0.140 4.140 21 C -0.084 4.084 22 C -0.177 4.177 23 C 0.104 3.896 24 F -0.110 7.110 25 C -0.191 4.191 26 C -0.187 4.187 27 C 0.002 3.998 28 O -0.256 6.256 29 H 0.070 0.930 30 H 0.042 0.958 31 H 0.057 0.943 32 H 0.118 0.882 33 H 0.050 0.950 34 H 0.074 0.926 35 H 0.227 0.773 36 H 0.170 0.830 37 H 0.165 0.835 38 H 0.161 0.839 39 H 0.164 0.836 40 H 0.205 0.795 41 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -4.991 9.449 -20.307 22.947 hybrid contribution 0.348 0.773 0.068 0.850 sum -4.643 10.221 -20.239 23.144 Atomic orbital electron populations 1.21847 0.98246 0.98159 1.01309 1.21941 0.92689 0.99645 1.02363 1.18873 0.94376 0.89278 0.80649 0.93059 1.21262 0.90608 1.38911 1.06302 0.91956 1.24879 0.98602 0.94813 0.95378 1.69907 1.35013 1.37692 1.09325 0.86399 0.84891 0.77755 0.78092 1.19733 1.20907 1.20888 1.46422 1.13915 1.54604 1.18795 1.16735 0.83316 0.79341 0.84157 1.90808 1.51537 1.59913 1.38026 1.23242 0.93207 1.04906 0.94978 1.73691 1.23384 1.13569 0.97346 1.42144 1.10410 1.40035 1.09517 1.17227 0.94101 0.98782 0.81177 1.21153 0.93887 1.00999 0.97950 1.20977 1.00094 0.95600 0.91699 1.21302 0.93065 1.01423 1.01950 1.17198 0.89868 0.95629 0.86902 1.91543 1.74999 1.77484 1.67006 1.20679 1.01867 1.03831 0.92761 1.22877 0.90559 1.07839 0.97425 1.18129 0.88831 1.02508 0.90310 1.84893 1.39046 1.47582 1.54059 0.93037 0.95782 0.94294 0.88162 0.94967 0.92618 0.77289 0.82967 0.83508 0.83911 0.83597 0.79456 0.75451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 8.51 37.16 0.32 -2.87 16 2 C -0.13 -3.15 5.45 -26.73 -0.15 -3.30 16 3 C 0.27 6.86 2.24 -69.08 -0.15 6.70 16 4 H 0.05 1.49 7.58 -51.93 -0.39 1.10 16 5 C -0.53 -14.11 8.73 -34.44 -0.30 -14.41 16 6 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.64 11.29 55.43 0.63 -24.01 16 9 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 10 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 13 N -0.69 -15.07 5.02 -55.99 -0.28 -15.35 16 14 C 0.58 12.39 6.38 -12.50 -0.08 12.31 16 15 O -0.53 -12.56 13.66 3.03 0.04 -12.52 16 16 C 0.00 0.01 7.13 -82.66 -0.59 -0.58 16 17 N -0.25 -3.86 10.84 33.46 0.36 -3.50 16 18 N -0.24 -3.05 3.52 -10.41 -0.04 -3.09 16 19 C 0.18 1.84 6.66 -83.63 -0.56 1.29 16 20 C -0.12 -1.10 9.59 -39.39 -0.38 -1.48 16 21 C -0.07 -0.43 10.04 -39.62 -0.40 -0.83 16 22 C -0.16 -1.02 10.02 -39.48 -0.40 -1.42 16 23 C 0.12 0.98 7.30 -39.44 -0.29 0.69 16 24 F -0.13 -1.11 17.27 2.25 0.04 -1.07 16 25 C -0.17 -1.42 9.41 -39.33 -0.37 -1.79 16 26 C -0.05 -0.57 10.81 -16.54 -0.18 -0.74 16 27 C 0.06 0.87 7.35 -39.10 -0.29 0.58 16 28 O -0.45 -6.50 13.20 -22.22 -0.29 -6.79 16 29 H 0.05 1.24 7.84 -51.93 -0.41 0.84 16 30 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.04 0.89 5.65 -51.93 -0.29 0.60 16 32 H 0.10 2.71 5.95 -51.93 -0.31 2.40 16 33 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 35 H 0.39 7.88 8.26 -40.82 -0.34 7.55 16 36 H 0.15 1.48 7.64 -52.49 -0.40 1.08 16 37 H 0.15 0.59 8.06 -52.49 -0.42 0.17 16 38 H 0.14 0.61 8.06 -52.48 -0.42 0.18 16 39 H 0.15 0.96 6.65 -52.48 -0.35 0.61 16 40 H 0.19 1.44 6.96 -52.49 -0.37 1.07 16 41 H 0.39 3.88 9.07 45.56 0.41 4.30 16 LS Contribution 354.60 15.07 5.34 5.34 Total: -1.00 -32.46 354.60 -6.79 -39.26 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -3.67 Total: 10.34 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: -3.90 Total: -4.16 kcal Atomic # 7 Polarization: -46.62 SS G_CDS: 0.67 Total: -45.95 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: -0.25 Total: -19.31 kcal Atomic # 9 Polarization: -1.11 SS G_CDS: 0.04 Total: -1.07 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.46 -6.79 -39.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286232401.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.131 kcal (2) G-P(sol) polarization free energy of solvation -32.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.35 seconds