Wall clock time and date at job start Tue Mar 31 2020 17:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31511 * 119.99697 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99856 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47576 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47046 * 119.99929 * 9 7 5 12 12 H 1.48498 * 109.47240 * 239.99731 * 9 7 5 13 13 N 1.46501 * 109.47135 * 295.00335 * 3 2 1 14 14 C 1.34777 * 120.00027 * 84.99801 * 13 3 2 15 15 O 1.21600 * 119.99885 * 0.02562 * 14 13 3 16 16 C 1.47479 * 120.00214 * 179.97438 * 14 13 3 17 17 N 1.31994 * 126.44184 * 359.69211 * 16 14 13 18 18 N 1.28453 * 110.21939 * 179.87791 * 17 16 14 19 19 C 1.40098 * 124.93633 * 180.19449 * 18 17 16 20 20 C 1.38900 * 120.05551 * 0.22182 * 19 18 17 21 21 C 1.38098 * 119.98152 * 180.02562 * 20 19 18 22 22 C 1.38267 * 120.09528 * 0.02562 * 21 20 19 23 23 C 1.38489 * 120.11220 * 359.97438 * 22 21 20 24 24 F 1.35102 * 119.99023 * 180.02562 * 23 22 21 25 25 C 1.38362 * 120.01737 * 359.76574 * 23 22 21 26 26 C 1.36116 * 110.13251 * 0.38725 * 18 17 16 27 27 C 1.35757 * 107.05561 * 359.76941 * 26 18 17 28 28 O 1.36074 * 127.26285 * 179.97438 * 27 26 18 29 29 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 32 32 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 33 33 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 34 34 H 0.97005 * 119.99685 * 180.02562 * 8 7 5 35 35 H 0.96998 * 120.00208 * 264.99507 * 13 3 2 36 36 H 1.07997 * 120.00542 * 0.02861 * 20 19 18 37 37 H 1.07990 * 119.95223 * 180.02562 * 21 20 19 38 38 H 1.08003 * 119.94825 * 180.02562 * 22 21 20 39 39 H 1.08004 * 120.04894 * 180.25104 * 25 23 22 40 40 H 1.07999 * 126.47610 * 179.74162 * 26 18 17 41 41 H 0.96704 * 114.00086 * 270.04306 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.5988 1.5443 0.1931 11 1 6.4000 1.6156 2.6091 12 1 6.4962 -0.5190 1.4625 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3413 2.6326 -0.4315 16 6 0.0451 3.3243 -2.6268 17 7 0.7851 3.4387 -3.7138 18 7 0.1378 4.0682 -4.6273 19 6 0.6315 4.3568 -5.9063 20 6 1.9098 3.9502 -6.2667 21 6 2.3951 4.2359 -7.5276 22 6 1.6104 4.9269 -8.4324 23 6 0.3352 5.3341 -8.0772 24 9 -0.4296 6.0086 -8.9634 25 6 -0.1576 5.0456 -6.8170 26 6 -1.0959 4.4181 -4.1709 27 6 -1.1934 3.9607 -2.8964 28 8 -2.2552 4.0866 -2.0548 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 3.8293 -0.0605 2.9501 35 1 2.2718 2.1232 -1.9978 36 1 2.5240 3.4108 -5.5609 37 1 3.3889 3.9193 -7.8074 38 1 1.9921 5.1487 -9.4180 39 1 -1.1535 5.3594 -6.5409 40 1 -1.8539 4.9580 -4.7188 41 1 -2.2347 4.8871 -1.5128 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286232401.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:40 Heat of formation + Delta-G solvation = -31.735228 kcal Electronic energy + Delta-G solvation = -27780.818931 eV Core-core repulsion = 23576.840228 eV Total energy + Delta-G solvation = -4203.978703 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.00923 -44.11258 -40.64135 -39.93102 -38.26860 -36.89945 -34.71139 -34.17793 -32.80044 -32.16541 -31.05694 -30.28443 -28.93539 -26.07695 -24.86135 -24.36942 -23.09052 -22.31516 -21.79598 -21.03292 -20.11219 -19.09188 -18.62222 -17.75750 -17.56329 -17.44716 -17.18109 -17.02979 -16.75353 -16.61222 -16.15645 -16.01405 -15.53276 -15.37650 -14.93162 -14.75424 -14.58282 -14.27318 -13.93343 -13.56906 -13.38478 -13.21166 -13.18242 -12.88612 -12.78279 -12.70132 -12.43249 -12.17187 -12.08290 -11.62127 -11.58045 -11.20400 -11.05303 -10.93514 -10.53949 -10.26068 -10.04318 -9.70806 -9.35871 -8.15910 -6.33133 -0.53873 -0.00580 0.57650 0.95000 1.05612 1.44820 1.45644 1.57906 2.30112 2.33819 2.48124 2.50828 2.88865 3.13449 3.20005 3.42612 3.67595 3.71068 3.81486 3.95668 4.03003 4.22055 4.34072 4.45395 4.48548 4.55760 4.74097 4.79701 4.91685 4.94817 5.05470 5.09723 5.20336 5.24846 5.42350 5.50306 5.52246 5.59917 5.77077 5.79989 5.89821 6.14874 6.51880 6.72836 6.73353 6.94699 7.30330 7.47105 8.89973 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.013822 B = 0.002979 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.227852 B = 9397.396249 C =11001.917337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.120 4.120 3 C 0.278 3.722 4 H 0.005 0.995 5 C -0.548 4.548 6 H 0.069 0.931 7 C 0.017 3.983 8 N -0.913 5.913 9 Si 0.972 3.028 10 H -0.262 1.262 11 H -0.283 1.283 12 H -0.277 1.277 13 N -0.690 5.690 14 C 0.584 3.416 15 O -0.562 6.562 16 C -0.040 4.040 17 N -0.253 5.253 18 N -0.226 5.226 19 C 0.143 3.857 20 C -0.129 4.129 21 C -0.059 4.059 22 C -0.142 4.142 23 C 0.114 3.886 24 F -0.134 7.134 25 C -0.160 4.160 26 C -0.022 4.022 27 C 0.038 3.962 28 O -0.464 6.464 29 H 0.030 0.970 30 H 0.047 0.953 31 H 0.036 0.964 32 H 0.077 0.923 33 H 0.038 0.962 34 H 0.266 0.734 35 H 0.403 0.597 36 H 0.141 0.859 37 H 0.176 0.824 38 H 0.171 0.829 39 H 0.165 0.835 40 H 0.234 0.766 41 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.544 11.428 -23.937 26.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.159 4.159 3 C 0.176 3.824 4 H 0.023 0.977 5 C -0.587 4.587 6 H 0.087 0.913 7 C -0.183 4.183 8 N -0.551 5.551 9 Si 0.796 3.204 10 H -0.186 1.186 11 H -0.208 1.208 12 H -0.203 1.203 13 N -0.339 5.339 14 C 0.368 3.632 15 O -0.440 6.440 16 C -0.201 4.201 17 N -0.088 5.088 18 N -0.010 5.010 19 C 0.053 3.947 20 C -0.149 4.149 21 C -0.077 4.077 22 C -0.160 4.160 23 C 0.094 3.906 24 F -0.113 7.113 25 C -0.181 4.181 26 C -0.162 4.162 27 C -0.017 4.017 28 O -0.272 6.272 29 H 0.050 0.950 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.095 0.905 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.237 0.763 36 H 0.158 0.842 37 H 0.193 0.807 38 H 0.188 0.812 39 H 0.182 0.818 40 H 0.251 0.749 41 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -4.252 10.534 -23.788 26.361 hybrid contribution 0.113 0.542 0.934 1.086 sum -4.139 11.076 -22.854 25.732 Atomic orbital electron populations 1.21677 0.97018 0.99241 1.00157 1.21793 0.93686 0.99046 1.01389 1.18482 0.93953 0.89228 0.80783 0.97718 1.21557 0.91183 1.39126 1.06787 0.91314 1.25757 1.03408 0.94248 0.94893 1.70048 1.37020 1.38253 1.09828 0.85305 0.78983 0.77896 0.78199 1.18583 1.20846 1.20307 1.46191 1.14739 1.55038 1.17889 1.17129 0.82368 0.78519 0.85196 1.90768 1.52310 1.61130 1.39796 1.22688 0.95303 1.07715 0.94421 1.73591 1.23621 1.14145 0.97420 1.42440 1.10510 1.38257 1.09751 1.17501 0.95239 1.01371 0.80556 1.21288 0.93619 1.01041 0.98967 1.21273 1.01234 0.94810 0.90406 1.21673 0.92170 0.99321 1.02880 1.17340 0.90449 0.96005 0.86778 1.91546 1.75175 1.77584 1.66978 1.20824 1.02345 1.02543 0.92429 1.23426 0.90573 1.06087 0.96075 1.18288 0.88273 1.03488 0.91679 1.84841 1.38783 1.49003 1.54543 0.95042 0.93417 0.94524 0.90474 0.94297 0.92485 0.76279 0.84154 0.80696 0.81162 0.81783 0.74939 0.73697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.89 8.51 71.98 0.61 -5.27 16 2 C -0.12 -6.17 5.45 30.59 0.17 -6.00 16 3 C 0.28 14.84 2.24 44.24 0.10 14.94 16 4 H 0.00 0.31 7.58 -2.38 -0.02 0.29 16 5 C -0.55 -29.78 8.73 25.60 0.22 -29.56 16 6 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 7 C 0.02 0.93 5.29 84.66 0.45 1.38 16 8 N -0.91 -52.53 11.29 21.45 0.24 -52.29 16 9 Si 0.97 42.44 29.54 68.60 2.03 44.46 16 10 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 11 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 12 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 13 N -0.69 -31.52 5.02 -449.31 -2.25 -33.77 16 14 C 0.58 26.02 6.38 86.68 0.55 26.57 16 15 O -0.56 -28.33 13.66 -1.89 -0.03 -28.36 16 16 C -0.04 -1.46 7.13 42.44 0.30 -1.15 16 17 N -0.25 -7.90 10.84 -48.05 -0.52 -8.42 16 18 N -0.23 -5.47 3.52 -186.84 -0.66 -6.13 16 19 C 0.14 2.66 6.66 38.11 0.25 2.91 16 20 C -0.13 -2.14 9.59 22.40 0.21 -1.92 16 21 C -0.06 -0.58 10.04 22.24 0.22 -0.36 16 22 C -0.14 -1.27 10.02 22.34 0.22 -1.05 16 23 C 0.11 1.40 7.30 22.36 0.16 1.57 16 24 F -0.13 -1.82 17.27 44.97 0.78 -1.04 16 25 C -0.16 -2.17 9.41 22.43 0.21 -1.96 16 26 C -0.02 -0.47 10.81 83.45 0.90 0.44 16 27 C 0.04 1.14 7.35 22.58 0.17 1.30 16 28 O -0.46 -13.42 13.20 -92.25 -1.22 -14.64 16 29 H 0.03 1.58 7.84 -2.39 -0.02 1.56 16 30 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.04 1.73 5.65 -2.38 -0.01 1.72 16 32 H 0.08 4.34 5.95 -2.39 -0.01 4.33 16 33 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.27 14.40 8.31 -92.70 -0.77 13.63 16 35 H 0.40 16.70 8.26 -92.71 -0.77 15.94 16 36 H 0.14 2.64 7.64 -2.91 -0.02 2.62 16 37 H 0.18 0.71 8.06 -2.92 -0.02 0.69 16 38 H 0.17 0.61 8.06 -2.91 -0.02 0.59 16 39 H 0.16 1.51 6.65 -2.91 -0.02 1.49 16 40 H 0.23 2.62 6.96 -2.91 -0.02 2.60 16 41 H 0.41 8.19 9.07 -74.05 -0.67 7.52 16 Total: -1.00 -73.68 354.60 2.81 -70.87 By element: Atomic # 1 Polarization: 27.82 SS G_CDS: -0.32 Total: 27.50 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: 4.76 Total: 1.83 kcal Atomic # 7 Polarization: -97.43 SS G_CDS: -3.19 Total: -100.62 kcal Atomic # 8 Polarization: -41.76 SS G_CDS: -1.24 Total: -43.00 kcal Atomic # 9 Polarization: -1.82 SS G_CDS: 0.78 Total: -1.04 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.46 kcal Total: -73.68 2.81 -70.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286232401.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.131 kcal (2) G-P(sol) polarization free energy of solvation -73.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds