Wall clock time and date at job start Tue Mar 31 2020 19:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.47105 * 2 1 4 4 C 1.37100 * 119.99939 * 264.77060 * 3 2 1 5 5 H 1.07998 * 119.99688 * 138.85365 * 4 3 2 6 6 C 1.38948 * 120.00242 * 318.85245 * 4 3 2 7 7 N 1.31412 * 120.00070 * 341.82891 * 6 4 3 8 8 Si 1.86804 * 119.99875 * 161.82974 * 6 4 3 9 9 H 1.48493 * 109.47068 * 90.00166 * 8 6 4 10 10 H 1.48498 * 109.46846 * 210.00027 * 8 6 4 11 11 H 1.48495 * 109.47039 * 329.99796 * 8 6 4 12 12 C 1.34769 * 119.99708 * 84.77079 * 3 2 1 13 13 O 1.21293 * 119.99874 * 180.02562 * 12 3 2 14 14 C 1.50704 * 120.00475 * 0.02562 * 12 3 2 15 15 C 1.50695 * 109.47377 * 179.97438 * 14 12 3 16 16 C 1.33507 * 122.71412 * 124.99753 * 15 14 12 17 17 S 1.76184 * 108.03479 * 180.02562 * 16 15 14 18 18 C 1.70965 * 90.33052 * 0.02562 * 17 16 15 19 19 N 1.39383 * 124.93467 * 179.97438 * 18 17 16 20 20 C 1.36667 * 125.67948 * 179.68756 * 19 18 17 21 21 C 1.50703 * 125.89962 * 359.97438 * 20 19 18 22 22 C 1.34821 * 108.19267 * 179.86806 * 20 19 18 23 23 C 1.40968 * 107.49097 * 0.39542 * 22 20 19 24 24 C 1.34827 * 107.48875 * 359.75391 * 23 22 20 25 25 C 1.50701 * 125.90340 * 180.02562 * 24 23 22 26 26 N 1.29559 * 110.11978 * 359.97438 * 18 17 16 27 27 H 1.09000 * 109.46955 * 299.99495 * 1 2 3 28 28 H 1.08998 * 109.47290 * 59.99574 * 1 2 3 29 29 H 1.09002 * 109.46921 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46955 * 240.00505 * 2 1 3 31 31 H 1.08998 * 109.47290 * 120.00426 * 2 1 3 32 32 H 0.96996 * 119.99979 * 179.97438 * 7 6 4 33 33 H 1.09007 * 109.46860 * 59.99556 * 14 12 3 34 34 H 1.09002 * 109.46969 * 300.00243 * 14 12 3 35 35 H 1.07993 * 125.98501 * 359.76294 * 16 15 14 36 36 H 1.08995 * 109.47130 * 90.00122 * 21 20 19 37 37 H 1.09003 * 109.46762 * 209.99180 * 21 20 19 38 38 H 1.08995 * 109.47154 * 329.99312 * 21 20 19 39 39 H 1.08009 * 126.25473 * 180.17038 * 22 20 19 40 40 H 1.08005 * 126.25950 * 179.77851 * 23 22 20 41 41 H 1.09003 * 109.46964 * 269.95732 * 25 24 23 42 42 H 1.08992 * 109.47620 * 29.95678 * 25 24 23 43 43 H 1.08998 * 109.47082 * 149.95950 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3488 1.9915 -1.1824 5 1 2.0743 3.0218 -1.3534 6 6 3.0371 1.2843 -2.1606 7 7 3.6791 0.1819 -1.8452 8 14 3.0498 1.9007 -3.9239 9 1 4.2053 2.8121 -4.1214 10 1 3.1657 0.7463 -4.8509 11 1 1.7883 2.6334 -4.2012 12 6 2.1426 2.0520 1.1623 13 8 2.5465 3.1957 1.1623 14 6 1.7799 1.3810 2.4621 15 6 2.0083 2.3389 3.6028 16 6 1.0547 2.6540 4.4824 17 16 1.7354 3.7949 5.6395 18 6 3.2383 3.7381 4.8265 19 7 4.3755 4.4521 5.2003 20 6 5.5853 4.4136 4.5657 21 6 5.9174 3.5936 3.3457 22 6 6.4294 5.2377 5.2184 23 6 5.7212 5.7996 6.3000 24 6 4.4683 5.3028 6.2659 25 6 3.3613 5.6294 7.2349 26 7 3.1664 2.9348 3.8126 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 4.1592 -0.3120 -2.5282 33 1 2.4020 0.4967 2.6005 34 1 0.7305 1.0869 2.4387 35 1 0.0421 2.2788 4.4821 36 1 5.7060 4.1752 2.4484 37 1 6.9739 3.3260 3.3645 38 1 5.3129 2.6867 3.3418 39 1 7.4609 5.4293 4.9618 40 1 6.1108 6.5005 7.0235 41 1 3.3877 4.9260 8.0672 42 1 3.4957 6.6432 7.6118 43 1 2.3999 5.5551 6.7267 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299282444.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:37 Heat of formation + Delta-G solvation = 73.046895 kcal Electronic energy + Delta-G solvation = -26439.678032 eV Core-core repulsion = 22806.456198 eV Total energy + Delta-G solvation = -3633.221833 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.65898 -39.75428 -38.14742 -34.89383 -33.26466 -32.68732 -32.07193 -30.35328 -29.42013 -29.13759 -27.85785 -25.01315 -24.22348 -24.13994 -22.28765 -21.19688 -20.46864 -18.91761 -18.58012 -17.19862 -16.75982 -16.40550 -16.07600 -15.62603 -15.06153 -14.72254 -14.18770 -14.02298 -13.82140 -13.73254 -13.52118 -13.17501 -12.98285 -12.93449 -12.83433 -12.57616 -12.32177 -12.13135 -12.01709 -11.94805 -11.74487 -11.45145 -11.23817 -11.05231 -10.96021 -10.87092 -10.35312 -10.33395 -10.10606 -9.79189 -9.45289 -9.13640 -8.88829 -8.38394 -7.99566 -7.83646 -7.37568 -6.28610 -3.96613 0.58306 0.99649 1.67766 2.21877 2.63704 2.97177 3.15379 3.19621 3.27679 3.32540 3.95996 4.19655 4.34897 4.79360 4.89386 4.99372 5.05119 5.21571 5.27983 5.33756 5.37633 5.51182 5.51717 5.65009 5.69873 5.80313 5.89442 5.92057 5.95942 6.13126 6.18057 6.22315 6.24130 6.33799 6.37318 6.50068 6.58571 6.86344 7.03796 7.06601 7.21781 7.31448 7.61484 7.94723 8.33302 8.56460 9.24784 9.43325 10.06992 10.76691 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.015754 B = 0.003557 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.849639 B = 7869.400687 C = 9127.248757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.102 3.898 3 N -0.444 5.444 4 C -0.305 4.305 5 H 0.085 0.915 6 C 0.039 3.961 7 N -0.872 5.872 8 Si 0.916 3.084 9 H -0.277 1.277 10 H -0.283 1.283 11 H -0.270 1.270 12 C 0.470 3.530 13 O -0.561 6.561 14 C -0.070 4.070 15 C 0.133 3.867 16 C -0.287 4.287 17 S 0.142 5.858 18 C 0.249 3.751 19 N -0.365 5.365 20 C 0.064 3.936 21 C -0.091 4.091 22 C -0.203 4.203 23 C -0.168 4.168 24 C -0.005 4.005 25 C -0.087 4.087 26 N -0.446 5.446 27 H 0.041 0.959 28 H 0.057 0.943 29 H 0.050 0.950 30 H 0.104 0.896 31 H 0.047 0.953 32 H 0.266 0.734 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.180 0.820 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.089 0.911 39 H 0.143 0.857 40 H 0.143 0.857 41 H 0.077 0.923 42 H 0.090 0.910 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.044 2.997 16.583 17.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.022 4.022 3 N -0.165 5.165 4 C -0.433 4.433 5 H 0.103 0.897 6 C -0.165 4.165 7 N -0.510 5.510 8 Si 0.742 3.258 9 H -0.203 1.203 10 H -0.209 1.209 11 H -0.195 1.195 12 C 0.256 3.744 13 O -0.442 6.442 14 C -0.113 4.113 15 C 0.001 3.999 16 C -0.425 4.425 17 S 0.394 5.606 18 C -0.117 4.117 19 N -0.044 5.044 20 C -0.047 4.047 21 C -0.148 4.148 22 C -0.227 4.227 23 C -0.193 4.193 24 C -0.112 4.112 25 C -0.146 4.146 26 N -0.163 5.163 27 H 0.060 0.940 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.122 0.878 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.118 0.882 34 H 0.115 0.885 35 H 0.198 0.802 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.108 0.892 39 H 0.161 0.839 40 H 0.161 0.839 41 H 0.096 0.904 42 H 0.109 0.891 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.920 3.706 16.927 17.572 hybrid contribution -0.079 -0.481 -1.705 1.774 sum -2.999 3.225 15.222 15.846 Atomic orbital electron populations 1.22237 0.98332 1.00329 1.01483 1.21455 0.91496 0.85769 1.03473 1.43398 1.56734 1.11693 1.04644 1.19310 1.34778 0.98442 0.90810 0.89683 1.25391 0.94083 0.96584 1.00440 1.69925 1.29589 1.17580 1.33894 0.86117 0.78946 0.78323 0.82401 1.20314 1.20863 1.19478 1.19982 0.82161 0.88062 0.84158 1.90562 1.48846 1.18433 1.86403 1.20456 1.03078 0.96778 0.90971 1.19540 0.86414 0.97490 0.96442 1.26961 1.05483 1.07646 1.02403 1.83777 1.03258 1.42959 1.30559 1.23455 0.92189 0.99270 0.96808 1.40765 1.06613 1.33583 1.23407 1.20832 0.83317 1.02277 0.98234 1.20502 1.01540 1.00171 0.92613 1.20763 1.00051 1.02830 0.99027 1.20689 0.92532 1.04676 1.01432 1.20386 0.98487 0.99459 0.92887 1.20476 0.94213 1.03212 0.96654 1.65995 1.26671 1.09097 1.14541 0.93991 0.92376 0.93080 0.87838 0.93445 0.92361 0.88172 0.88481 0.80235 0.90383 0.90995 0.89202 0.83896 0.83877 0.90426 0.89141 0.91630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.83 10.15 37.16 0.38 -2.45 16 2 C 0.10 2.15 5.41 -4.04 -0.02 2.13 16 3 N -0.44 -11.13 2.50 -114.81 -0.29 -11.42 16 4 C -0.31 -8.49 8.84 -14.93 -0.13 -8.62 16 5 H 0.09 2.49 7.82 -52.49 -0.41 2.08 16 6 C 0.04 1.04 4.95 -17.47 -0.09 0.95 16 7 N -0.87 -23.62 11.61 55.50 0.64 -22.97 16 8 Si 0.92 20.80 29.59 -169.99 -5.03 15.77 16 9 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 12 C 0.47 11.49 7.56 -10.99 -0.08 11.40 16 13 O -0.56 -15.93 15.36 5.55 0.09 -15.85 16 14 C -0.07 -1.29 4.80 -29.04 -0.14 -1.43 16 15 C 0.13 2.42 5.63 -84.21 -0.47 1.95 16 16 C -0.29 -4.14 11.05 29.08 0.32 -3.82 16 17 S 0.14 1.88 19.23 -107.50 -2.07 -0.19 16 18 C 0.25 4.36 7.91 -87.03 -0.69 3.67 16 19 N -0.36 -6.13 2.95 -56.07 -0.17 -6.30 16 20 C 0.06 1.08 6.86 -81.65 -0.56 0.52 16 21 C -0.09 -1.60 9.73 36.01 0.35 -1.25 16 22 C -0.20 -2.92 10.76 -39.76 -0.43 -3.35 16 23 C -0.17 -2.18 10.76 -39.76 -0.43 -2.60 16 24 C -0.01 -0.08 6.86 -81.65 -0.56 -0.64 16 25 C -0.09 -0.85 9.36 36.01 0.34 -0.51 16 26 N -0.45 -8.90 7.22 -11.19 -0.08 -8.98 16 27 H 0.04 0.65 6.60 -51.93 -0.34 0.31 16 28 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.10 2.43 5.76 -51.93 -0.30 2.13 16 31 H 0.05 0.90 6.66 -51.93 -0.35 0.56 16 32 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 33 H 0.10 1.76 7.41 -51.93 -0.38 1.37 16 34 H 0.10 1.48 6.42 -51.93 -0.33 1.15 16 35 H 0.18 1.98 8.06 -52.49 -0.42 1.56 16 36 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 37 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.09 1.78 6.30 -51.93 -0.33 1.46 16 39 H 0.14 1.73 8.06 -52.48 -0.42 1.31 16 40 H 0.14 1.40 8.06 -52.48 -0.42 0.98 16 41 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.07 0.67 5.04 -34.36 -0.17 0.49 16 LS Contribution 363.77 15.07 5.48 5.48 Total: -1.00 -33.80 363.77 -9.19 -42.99 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -5.56 Total: 5.51 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: -2.22 Total: -4.05 kcal Atomic # 7 Polarization: -49.78 SS G_CDS: 0.11 Total: -49.67 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: 0.09 Total: -15.85 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.03 Total: 15.77 kcal Atomic # 16 Polarization: 1.88 SS G_CDS: -2.07 Total: -0.19 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.80 -9.19 -42.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299282444.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.037 kcal (2) G-P(sol) polarization free energy of solvation -33.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds