Wall clock time and date at job start Tue Mar 31 2020 19:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.47105 * 2 1 4 4 C 1.37100 * 119.99939 * 264.77060 * 3 2 1 5 5 H 1.07998 * 119.99688 * 138.85365 * 4 3 2 6 6 C 1.38948 * 120.00242 * 318.85245 * 4 3 2 7 7 N 1.31412 * 120.00070 * 341.82891 * 6 4 3 8 8 Si 1.86804 * 119.99875 * 161.82974 * 6 4 3 9 9 H 1.48493 * 109.47068 * 90.00166 * 8 6 4 10 10 H 1.48498 * 109.46846 * 210.00027 * 8 6 4 11 11 H 1.48495 * 109.47039 * 329.99796 * 8 6 4 12 12 C 1.34769 * 119.99708 * 84.77079 * 3 2 1 13 13 O 1.21293 * 119.99874 * 180.02562 * 12 3 2 14 14 C 1.50704 * 120.00475 * 0.02562 * 12 3 2 15 15 C 1.50695 * 109.47377 * 179.97438 * 14 12 3 16 16 C 1.33507 * 122.71412 * 124.99753 * 15 14 12 17 17 S 1.76184 * 108.03479 * 180.02562 * 16 15 14 18 18 C 1.70965 * 90.33052 * 0.02562 * 17 16 15 19 19 N 1.39383 * 124.93467 * 179.97438 * 18 17 16 20 20 C 1.36667 * 125.67948 * 179.68756 * 19 18 17 21 21 C 1.50703 * 125.89962 * 359.97438 * 20 19 18 22 22 C 1.34821 * 108.19267 * 179.86806 * 20 19 18 23 23 C 1.40968 * 107.49097 * 0.39542 * 22 20 19 24 24 C 1.34827 * 107.48875 * 359.75391 * 23 22 20 25 25 C 1.50701 * 125.90340 * 180.02562 * 24 23 22 26 26 N 1.29559 * 110.11978 * 359.97438 * 18 17 16 27 27 H 1.09000 * 109.46955 * 299.99495 * 1 2 3 28 28 H 1.08998 * 109.47290 * 59.99574 * 1 2 3 29 29 H 1.09002 * 109.46921 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46955 * 240.00505 * 2 1 3 31 31 H 1.08998 * 109.47290 * 120.00426 * 2 1 3 32 32 H 0.96996 * 119.99979 * 179.97438 * 7 6 4 33 33 H 1.09007 * 109.46860 * 59.99556 * 14 12 3 34 34 H 1.09002 * 109.46969 * 300.00243 * 14 12 3 35 35 H 1.07993 * 125.98501 * 359.76294 * 16 15 14 36 36 H 1.08995 * 109.47130 * 90.00122 * 21 20 19 37 37 H 1.09003 * 109.46762 * 209.99180 * 21 20 19 38 38 H 1.08995 * 109.47154 * 329.99312 * 21 20 19 39 39 H 1.08009 * 126.25473 * 180.17038 * 22 20 19 40 40 H 1.08005 * 126.25950 * 179.77851 * 23 22 20 41 41 H 1.09003 * 109.46964 * 269.95732 * 25 24 23 42 42 H 1.08992 * 109.47620 * 29.95678 * 25 24 23 43 43 H 1.08998 * 109.47082 * 149.95950 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3488 1.9915 -1.1824 5 1 2.0743 3.0218 -1.3534 6 6 3.0371 1.2843 -2.1606 7 7 3.6791 0.1819 -1.8452 8 14 3.0498 1.9007 -3.9239 9 1 4.2053 2.8121 -4.1214 10 1 3.1657 0.7463 -4.8509 11 1 1.7883 2.6334 -4.2012 12 6 2.1426 2.0520 1.1623 13 8 2.5465 3.1957 1.1623 14 6 1.7799 1.3810 2.4621 15 6 2.0083 2.3389 3.6028 16 6 1.0547 2.6540 4.4824 17 16 1.7354 3.7949 5.6395 18 6 3.2383 3.7381 4.8265 19 7 4.3755 4.4521 5.2003 20 6 5.5853 4.4136 4.5657 21 6 5.9174 3.5936 3.3457 22 6 6.4294 5.2377 5.2184 23 6 5.7212 5.7996 6.3000 24 6 4.4683 5.3028 6.2659 25 6 3.3613 5.6294 7.2349 26 7 3.1664 2.9348 3.8126 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 4.1592 -0.3120 -2.5282 33 1 2.4020 0.4967 2.6005 34 1 0.7305 1.0869 2.4387 35 1 0.0421 2.2788 4.4821 36 1 5.7060 4.1752 2.4484 37 1 6.9739 3.3260 3.3645 38 1 5.3129 2.6867 3.3418 39 1 7.4609 5.4293 4.9618 40 1 6.1108 6.5005 7.0235 41 1 3.3877 4.9260 8.0672 42 1 3.4957 6.6432 7.6118 43 1 2.3999 5.5551 6.7267 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299282444.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:36 Heat of formation + Delta-G solvation = 53.894404 kcal Electronic energy + Delta-G solvation = -26440.508546 eV Core-core repulsion = 22806.456198 eV Total energy + Delta-G solvation = -3634.052348 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.75906 -41.12767 -39.86551 -36.80722 -34.53499 -33.97549 -33.73438 -31.72348 -31.09925 -30.24125 -29.20607 -26.79104 -25.57757 -25.23771 -23.91189 -22.39504 -21.78505 -20.49016 -19.74601 -18.74673 -18.35966 -17.81187 -17.51860 -17.10985 -16.79950 -16.16547 -15.68991 -15.54592 -15.07500 -14.91254 -14.80336 -14.50427 -14.27129 -14.19961 -14.02915 -13.91910 -13.71403 -13.54470 -13.49580 -13.23366 -13.09422 -12.91371 -12.88611 -12.67511 -12.63695 -12.25231 -12.09390 -11.94440 -11.76408 -10.94945 -10.87787 -10.66485 -10.32096 -10.23240 -9.35698 -9.16460 -8.94318 -8.32651 -6.08622 -0.57950 -0.12146 0.53647 1.06375 1.35443 1.38142 1.50451 1.56182 1.89905 1.91493 2.11146 2.31113 3.01783 3.15202 3.19511 3.77012 3.96478 4.06900 4.13687 4.22363 4.29248 4.32264 4.35632 4.42298 4.51274 4.62546 4.65102 4.66869 4.70029 4.77264 4.87092 4.93503 4.98713 5.08390 5.10799 5.16980 5.32619 5.33897 5.46047 5.58046 5.92590 6.02292 6.15720 6.24885 6.59682 6.79695 7.22978 7.50341 8.13630 8.70904 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.015754 B = 0.003557 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.849639 B = 7869.400687 C = 9127.248757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.101 3.899 3 N -0.458 5.458 4 C -0.337 4.337 5 H 0.055 0.945 6 C 0.005 3.995 7 N -0.892 5.892 8 Si 0.977 3.023 9 H -0.283 1.283 10 H -0.265 1.265 11 H -0.266 1.266 12 C 0.456 3.544 13 O -0.614 6.614 14 C -0.054 4.054 15 C 0.088 3.912 16 C -0.272 4.272 17 S 0.237 5.763 18 C 0.207 3.793 19 N -0.379 5.379 20 C 0.011 3.989 21 C -0.078 4.078 22 C -0.192 4.192 23 C -0.173 4.173 24 C -0.009 4.009 25 C -0.087 4.087 26 N -0.494 5.494 27 H 0.060 0.940 28 H 0.039 0.961 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.272 0.728 33 H 0.104 0.896 34 H 0.135 0.865 35 H 0.219 0.781 36 H 0.042 0.958 37 H 0.092 0.908 38 H 0.061 0.939 39 H 0.161 0.839 40 H 0.180 0.820 41 H 0.098 0.902 42 H 0.120 0.880 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.789 3.168 19.194 20.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.022 4.022 3 N -0.178 5.178 4 C -0.466 4.466 5 H 0.073 0.927 6 C -0.197 4.197 7 N -0.530 5.530 8 Si 0.801 3.199 9 H -0.209 1.209 10 H -0.190 1.190 11 H -0.191 1.191 12 C 0.245 3.755 13 O -0.499 6.499 14 C -0.096 4.096 15 C -0.044 4.044 16 C -0.411 4.411 17 S 0.490 5.510 18 C -0.158 4.158 19 N -0.058 5.058 20 C -0.098 4.098 21 C -0.135 4.135 22 C -0.216 4.216 23 C -0.197 4.197 24 C -0.116 4.116 25 C -0.145 4.145 26 N -0.213 5.213 27 H 0.079 0.921 28 H 0.058 0.942 29 H 0.105 0.895 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.122 0.878 34 H 0.152 0.848 35 H 0.236 0.764 36 H 0.061 0.939 37 H 0.111 0.889 38 H 0.079 0.921 39 H 0.179 0.821 40 H 0.197 0.803 41 H 0.116 0.884 42 H 0.138 0.862 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.678 3.839 19.550 20.465 hybrid contribution 0.467 -0.477 -2.400 2.491 sum -4.211 3.362 17.149 17.976 Atomic orbital electron populations 1.22119 0.94925 1.02624 1.01505 1.21573 0.94248 0.83417 1.03010 1.43703 1.56818 1.13024 1.04254 1.19244 1.36438 0.97887 0.92993 0.92693 1.26095 0.93214 0.96671 1.03767 1.69996 1.29622 1.18233 1.35126 0.85204 0.78621 0.78187 0.77924 1.20902 1.18954 1.19051 1.20973 0.81000 0.87613 0.85926 1.90516 1.50943 1.20912 1.87483 1.20311 1.05106 0.96407 0.87760 1.19560 0.87389 0.99443 0.97975 1.27542 1.06277 1.06113 1.01162 1.83319 0.99232 1.40586 1.27837 1.23878 0.94262 0.99902 0.97737 1.41057 1.06407 1.34160 1.24221 1.20848 0.84944 1.04723 0.99306 1.20259 1.02247 0.98666 0.92373 1.21141 1.00613 1.01201 0.98685 1.21129 0.92094 1.05020 1.01472 1.21247 1.00097 0.97948 0.92283 1.20676 0.92212 1.05565 0.96057 1.65907 1.28515 1.10501 1.16373 0.92108 0.94199 0.89541 0.90527 0.91592 0.91889 0.87834 0.84766 0.76407 0.93917 0.88907 0.92053 0.82098 0.80316 0.88397 0.86162 0.92134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.00 10.15 71.98 0.73 -4.27 16 2 C 0.10 4.26 5.41 86.38 0.47 4.72 16 3 N -0.46 -23.83 2.50 -635.54 -1.59 -25.42 16 4 C -0.34 -19.72 8.84 84.04 0.74 -18.98 16 5 H 0.06 3.46 7.82 -2.91 -0.02 3.44 16 6 C 0.00 0.27 4.95 84.93 0.42 0.69 16 7 N -0.89 -49.62 11.61 21.66 0.25 -49.36 16 8 Si 0.98 43.81 29.59 68.60 2.03 45.84 16 9 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 10 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 11 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 12 C 0.46 23.27 7.56 87.66 0.66 23.93 16 13 O -0.61 -37.18 15.36 -3.07 -0.05 -37.23 16 14 C -0.05 -1.98 4.80 29.10 0.14 -1.85 16 15 C 0.09 3.21 5.63 41.47 0.23 3.44 16 16 C -0.27 -7.21 11.05 66.75 0.74 -6.47 16 17 S 0.24 5.68 19.23 -56.49 -1.09 4.60 16 18 C 0.21 7.32 7.91 179.09 1.42 8.73 16 19 N -0.38 -12.86 2.95 -331.31 -0.98 -13.84 16 20 C 0.01 0.40 6.86 41.02 0.28 0.68 16 21 C -0.08 -3.04 9.73 71.24 0.69 -2.34 16 22 C -0.19 -5.47 10.76 22.15 0.24 -5.23 16 23 C -0.17 -4.10 10.76 22.16 0.24 -3.86 16 24 C -0.01 -0.24 6.86 41.02 0.28 0.04 16 25 C -0.09 -1.38 9.36 71.24 0.67 -0.72 16 26 N -0.49 -20.57 7.22 -189.33 -1.37 -21.94 16 27 H 0.06 1.74 6.60 -2.39 -0.02 1.72 16 28 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.08 3.66 5.76 -2.39 -0.01 3.65 16 31 H 0.07 2.48 6.66 -2.39 -0.02 2.47 16 32 H 0.27 14.12 8.31 -92.71 -0.77 13.35 16 33 H 0.10 3.67 7.41 -2.38 -0.02 3.65 16 34 H 0.13 3.79 6.42 -2.39 -0.02 3.77 16 35 H 0.22 3.80 8.06 -2.91 -0.02 3.77 16 36 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.09 2.98 8.14 -2.39 -0.02 2.96 16 38 H 0.06 2.70 6.30 -2.39 -0.02 2.69 16 39 H 0.16 3.77 8.06 -2.91 -0.02 3.75 16 40 H 0.18 2.82 8.06 -2.91 -0.02 2.79 16 41 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.06 1.02 5.04 -13.56 -0.07 0.95 16 Total: -1.00 -81.65 363.77 6.14 -75.51 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: 0.98 Total: 23.32 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: 7.95 Total: -1.48 kcal Atomic # 7 Polarization: -106.88 SS G_CDS: -3.69 Total: -110.56 kcal Atomic # 8 Polarization: -37.18 SS G_CDS: -0.05 Total: -37.23 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Atomic # 16 Polarization: 5.68 SS G_CDS: -1.09 Total: 4.60 kcal Total: -81.65 6.14 -75.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299282444.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.400 kcal (2) G-P(sol) polarization free energy of solvation -81.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds