Wall clock time and date at job start Tue Mar 31 2020 19:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21295 * 120.00465 * 2 1 4 4 N 1.34775 * 120.00167 * 179.97438 * 2 1 3 5 5 C 1.40058 * 120.00560 * 185.32567 * 4 2 1 6 6 C 1.39040 * 119.95759 * 33.47947 * 5 4 2 7 7 C 1.38109 * 120.26920 * 180.02562 * 6 5 4 8 8 C 1.38335 * 120.19744 * 359.97438 * 7 6 5 9 9 F 1.35105 * 120.04166 * 179.97438 * 8 7 6 10 10 C 1.39814 * 119.91801 * 359.97438 * 8 7 6 11 11 C 1.47709 * 120.13322 * 179.97438 * 10 8 7 12 12 O 1.21574 * 119.99420 * 56.64121 * 11 10 8 13 13 N 1.34770 * 120.00274 * 236.64339 * 11 10 8 14 14 C 1.46504 * 120.00148 * 5.18002 * 13 11 10 15 15 C 1.50703 * 109.46709 * 269.99983 * 14 13 11 16 16 H 1.07997 * 120.00121 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99824 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00032 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00044 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47167 * 90.00078 * 19 17 15 21 21 H 1.48496 * 109.47078 * 210.00412 * 19 17 15 22 22 H 1.48501 * 109.47141 * 330.00225 * 19 17 15 23 23 C 1.46498 * 120.00340 * 185.17775 * 13 11 10 24 24 C 1.53004 * 109.47245 * 265.29102 * 23 13 11 25 25 C 1.47203 * 109.47430 * 179.97438 * 24 23 13 26 26 N 9.17498 * 141.08676 * 248.95195 * 5 1 2 27 27 C 1.38482 * 119.96820 * 213.72950 * 5 4 2 28 28 H 1.09004 * 109.47384 * 240.00423 * 1 2 3 29 29 H 1.09004 * 109.47187 * 359.97438 * 1 2 3 30 30 H 1.08995 * 109.47526 * 119.99917 * 1 2 3 31 31 H 0.97011 * 119.99706 * 5.33455 * 4 2 1 32 32 H 1.08001 * 119.86620 * 0.02562 * 6 5 4 33 33 H 1.08004 * 119.90650 * 179.97438 * 7 6 5 34 34 H 1.08999 * 109.46735 * 29.99291 * 14 13 11 35 35 H 1.08991 * 109.47267 * 149.99727 * 14 13 11 36 36 H 0.96998 * 119.99952 * 179.97438 * 18 17 15 37 37 H 1.09001 * 109.46993 * 25.28188 * 23 13 11 38 38 H 1.09001 * 109.47576 * 145.28649 * 23 13 11 39 39 H 1.09005 * 109.46837 * 299.99619 * 24 23 13 40 40 H 1.09001 * 109.47203 * 59.99319 * 24 23 13 41 41 H 1.07996 * 120.09394 * 0.02562 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5769 -1.1698 0.1131 6 6 4.2137 -0.1980 0.8768 7 6 5.5900 -0.1942 0.9918 8 6 6.3447 -1.1584 0.3479 9 9 7.6909 -1.1514 0.4621 10 6 5.7126 -2.1400 -0.4213 11 6 6.5138 -3.1714 -1.1113 12 8 7.2713 -3.8786 -0.4756 13 7 6.4050 -3.3285 -2.4454 14 6 5.5799 -2.4041 -3.2270 15 6 4.1702 -2.9313 -3.3037 16 1 3.9146 -3.8620 -2.8192 17 6 3.2068 -2.2254 -3.9926 18 7 3.5181 -1.0923 -4.5830 19 14 1.4596 -2.8792 -4.0884 20 1 0.6714 -2.3549 -2.9442 21 1 0.8356 -2.4395 -5.3621 22 1 1.4827 -4.3630 -4.0349 23 6 7.1120 -4.4236 -3.1141 24 6 8.4542 -3.9155 -3.6445 25 6 9.1648 -5.0160 -4.3159 26 7 9.7131 -5.8629 -4.8369 27 6 4.3218 -2.1372 -0.5404 28 1 -0.3634 -0.5138 0.8900 29 1 -0.3634 1.0277 0.0005 30 1 -0.3634 -0.5138 -0.8899 31 1 1.6989 -2.0055 -0.0772 32 1 3.6298 0.5570 1.3821 33 1 6.0787 0.5637 1.5861 34 1 5.5762 -1.4256 -2.7467 35 1 5.9893 -2.3135 -4.2330 36 1 2.8404 -0.5959 -5.0680 37 1 7.2847 -5.2320 -2.4036 38 1 6.5092 -4.7920 -3.9442 39 1 8.2815 -3.1071 -4.3550 40 1 9.0570 -3.5471 -2.8144 41 1 3.8277 -2.8895 -1.1373 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299375825.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:41 Heat of formation + Delta-G solvation = -60.070840 kcal Electronic energy + Delta-G solvation = -28910.085524 eV Core-core repulsion = 24704.878097 eV Total energy + Delta-G solvation = -4205.207428 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.49427 -40.34502 -39.44327 -37.68772 -36.64917 -35.30421 -34.42436 -33.07249 -31.74757 -30.56883 -30.32480 -28.10935 -27.36861 -24.83620 -23.41643 -22.86894 -22.22988 -20.66402 -19.01573 -17.55806 -17.43340 -17.19466 -17.01196 -16.61497 -16.11086 -15.93288 -15.55756 -15.07577 -14.95806 -14.69356 -14.56234 -14.12215 -13.89690 -13.60119 -13.39131 -13.12258 -12.86961 -12.85468 -12.57680 -12.44532 -12.38402 -12.33014 -12.14643 -11.96383 -11.69312 -11.54810 -11.23105 -11.01463 -10.98163 -10.69447 -10.31176 -10.06064 -9.93906 -9.80868 -9.39832 -8.75736 -8.61533 -8.02286 -7.74655 -6.35284 -4.41946 1.24594 1.50141 2.66119 2.82721 2.95039 2.98413 3.04623 3.14267 3.15189 3.31443 3.57144 3.99837 4.13213 4.33431 4.60021 4.73128 4.97033 4.98156 5.09683 5.19136 5.27362 5.29311 5.31907 5.48278 5.63072 5.66491 5.67475 5.83691 5.97287 6.13665 6.20482 6.39310 6.47388 6.51455 6.60243 6.62453 7.04618 7.18571 7.31069 7.50863 7.54587 7.70440 7.85749 8.03562 8.21682 8.56115 8.72510 9.22184 10.71197 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010511 B = 0.005126 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2663.282489 B = 5461.242494 C = 7521.712138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.512 3.488 3 O -0.528 6.528 4 N -0.666 5.666 5 C 0.125 3.875 6 C -0.078 4.078 7 C -0.153 4.153 8 C 0.121 3.879 9 F -0.134 7.134 10 C -0.134 4.134 11 C 0.566 3.434 12 O -0.553 6.553 13 N -0.588 5.588 14 C 0.233 3.767 15 C -0.543 4.543 16 H 0.064 0.936 17 C 0.072 3.928 18 N -0.875 5.875 19 Si 0.887 3.113 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.271 1.271 23 C 0.127 3.873 24 C -0.047 4.047 25 C 0.222 3.778 26 N -0.450 5.450 27 C -0.048 4.048 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.411 0.589 32 H 0.139 0.861 33 H 0.137 0.863 34 H 0.043 0.957 35 H 0.042 0.958 36 H 0.267 0.733 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.113 0.887 40 H 0.110 0.890 41 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.788 1.456 8.532 9.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.300 3.700 3 O -0.404 6.404 4 N -0.311 5.311 5 C 0.031 3.969 6 C -0.099 4.099 7 C -0.173 4.173 8 C 0.101 3.899 9 F -0.112 7.112 10 C -0.139 4.139 11 C 0.353 3.647 12 O -0.433 6.433 13 N -0.318 5.318 14 C 0.114 3.886 15 C -0.582 4.582 16 H 0.082 0.918 17 C -0.133 4.133 18 N -0.512 5.512 19 Si 0.714 3.286 20 H -0.204 1.204 21 H -0.209 1.209 22 H -0.196 1.196 23 C 0.001 3.999 24 C -0.088 4.088 25 C -0.096 4.096 26 N -0.128 5.128 27 C -0.068 4.068 28 H 0.108 0.892 29 H 0.113 0.887 30 H 0.109 0.891 31 H 0.247 0.753 32 H 0.157 0.843 33 H 0.155 0.845 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.077 0.923 37 H 0.103 0.897 38 H 0.108 0.892 39 H 0.131 0.869 40 H 0.128 0.872 41 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -3.245 0.767 7.933 8.605 hybrid contribution -1.368 -0.156 -0.279 1.405 sum -4.613 0.611 7.654 8.957 Atomic orbital electron populations 1.21925 0.91196 1.05730 1.04498 1.20878 0.90719 0.83206 0.75154 1.90732 1.70539 1.31189 1.47925 1.43477 1.05096 1.09895 1.72673 1.17547 0.83009 0.98145 0.98212 1.20969 0.93603 0.98256 0.97042 1.20764 0.93755 0.99632 1.03118 1.17581 0.77015 0.96313 0.99023 1.91494 1.29249 1.96053 1.94451 1.19549 0.94262 0.98068 1.01989 1.18034 0.81283 0.83036 0.82301 1.90738 1.39091 1.47144 1.66304 1.48141 1.47021 1.30388 1.06228 1.19562 0.89219 0.88330 0.91491 1.21378 0.93915 1.08112 1.34751 0.91772 1.24902 0.98868 0.94651 0.94915 1.69892 1.34505 1.13969 1.32822 0.86674 0.84503 0.79432 0.77992 1.20411 1.20941 1.19581 1.21155 0.90247 0.90151 0.98320 1.19784 0.96340 0.92212 1.00478 1.29072 0.93299 0.94205 0.93006 1.81152 1.10165 1.11073 1.10400 1.21565 0.91608 0.99961 0.93636 0.89204 0.88715 0.89108 0.75280 0.84288 0.84498 0.93935 0.94045 0.92295 0.89740 0.89152 0.86876 0.87217 0.81586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.63 10.32 36.00 0.37 -1.25 16 2 C 0.51 7.26 7.67 -10.99 -0.08 7.17 16 3 O -0.53 -9.52 14.78 5.54 0.08 -9.44 16 4 N -0.67 -9.23 5.34 -9.88 -0.05 -9.28 16 5 C 0.12 2.02 6.27 -83.71 -0.52 1.50 16 6 C -0.08 -1.23 8.65 -39.33 -0.34 -1.57 16 7 C -0.15 -2.36 10.00 -39.59 -0.40 -2.75 16 8 C 0.12 2.14 7.28 -38.96 -0.28 1.85 16 9 F -0.13 -2.43 16.72 2.25 0.04 -2.39 16 10 C -0.13 -2.49 4.42 -104.93 -0.46 -2.95 16 11 C 0.57 10.97 6.81 -12.39 -0.08 10.89 16 12 O -0.55 -11.67 16.52 5.30 0.09 -11.59 16 13 N -0.59 -10.71 2.46 -176.22 -0.43 -11.14 16 14 C 0.23 4.83 4.75 -5.19 -0.02 4.80 16 15 C -0.54 -11.89 6.49 -34.44 -0.22 -12.11 16 16 H 0.06 1.39 7.20 -52.49 -0.38 1.01 16 17 C 0.07 1.66 5.46 -17.82 -0.10 1.56 16 18 N -0.88 -21.96 13.29 55.43 0.74 -21.23 16 19 Si 0.89 17.67 29.54 -169.99 -5.02 12.65 16 20 H -0.28 -5.11 7.11 56.52 0.40 -4.71 16 21 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 22 H -0.27 -5.39 7.11 56.52 0.40 -4.98 16 23 C 0.13 1.94 5.38 -4.04 -0.02 1.92 16 24 C -0.05 -0.61 6.03 -29.52 -0.18 -0.79 16 25 C 0.22 3.19 15.43 -20.78 -0.32 2.87 16 26 N -0.45 -7.49 18.53 42.13 0.78 -6.71 16 27 C -0.05 -0.83 7.80 -38.99 -0.30 -1.14 16 28 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.09 0.85 8.12 -51.93 -0.42 0.43 16 30 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.41 4.52 8.82 -40.82 -0.36 4.16 16 32 H 0.14 2.09 6.41 -52.49 -0.34 1.76 16 33 H 0.14 1.73 8.06 -52.48 -0.42 1.31 16 34 H 0.04 0.97 6.77 -51.93 -0.35 0.62 16 35 H 0.04 0.89 8.07 -51.93 -0.42 0.47 16 36 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 37 H 0.08 1.32 7.36 -51.93 -0.38 0.93 16 38 H 0.09 1.35 8.11 -51.93 -0.42 0.93 16 39 H 0.11 1.36 8.14 -51.93 -0.42 0.93 16 40 H 0.11 1.40 8.14 -51.93 -0.42 0.98 16 41 H 0.17 3.00 5.23 -52.49 -0.27 2.73 16 LS Contribution 366.28 15.07 5.52 5.52 Total: -1.00 -29.99 366.28 -5.83 -35.82 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -4.59 Total: 7.79 kcal Atomic # 6 Polarization: 12.98 SS G_CDS: -2.97 Total: 10.00 kcal Atomic # 7 Polarization: -49.39 SS G_CDS: 1.03 Total: -48.36 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: 0.17 Total: -21.03 kcal Atomic # 9 Polarization: -2.43 SS G_CDS: 0.04 Total: -2.39 kcal Atomic # 14 Polarization: 17.67 SS G_CDS: -5.02 Total: 12.65 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.99 -5.83 -35.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299375825.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.254 kcal (2) G-P(sol) polarization free energy of solvation -29.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds