Wall clock time and date at job start Tue Mar 31 2020 19:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21295 * 120.00465 * 2 1 4 4 N 1.34775 * 120.00167 * 179.97438 * 2 1 3 5 5 C 1.40058 * 120.00560 * 185.32567 * 4 2 1 6 6 C 1.39040 * 119.95759 * 33.47947 * 5 4 2 7 7 C 1.38109 * 120.26920 * 180.02562 * 6 5 4 8 8 C 1.38335 * 120.19744 * 359.97438 * 7 6 5 9 9 F 1.35105 * 120.04166 * 179.97438 * 8 7 6 10 10 C 1.39814 * 119.91801 * 359.97438 * 8 7 6 11 11 C 1.47709 * 120.13322 * 179.97438 * 10 8 7 12 12 O 1.21574 * 119.99420 * 56.64121 * 11 10 8 13 13 N 1.34770 * 120.00274 * 236.64339 * 11 10 8 14 14 C 1.46504 * 120.00148 * 5.18002 * 13 11 10 15 15 C 1.50703 * 109.46709 * 269.99983 * 14 13 11 16 16 H 1.07997 * 120.00121 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99824 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00032 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00044 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47167 * 90.00078 * 19 17 15 21 21 H 1.48496 * 109.47078 * 210.00412 * 19 17 15 22 22 H 1.48501 * 109.47141 * 330.00225 * 19 17 15 23 23 C 1.46498 * 120.00340 * 185.17775 * 13 11 10 24 24 C 1.53004 * 109.47245 * 265.29102 * 23 13 11 25 25 C 1.47203 * 109.47430 * 179.97438 * 24 23 13 26 26 N 9.17498 * 141.08676 * 248.95195 * 5 1 2 27 27 C 1.38482 * 119.96820 * 213.72950 * 5 4 2 28 28 H 1.09004 * 109.47384 * 240.00423 * 1 2 3 29 29 H 1.09004 * 109.47187 * 359.97438 * 1 2 3 30 30 H 1.08995 * 109.47526 * 119.99917 * 1 2 3 31 31 H 0.97011 * 119.99706 * 5.33455 * 4 2 1 32 32 H 1.08001 * 119.86620 * 0.02562 * 6 5 4 33 33 H 1.08004 * 119.90650 * 179.97438 * 7 6 5 34 34 H 1.08999 * 109.46735 * 29.99291 * 14 13 11 35 35 H 1.08991 * 109.47267 * 149.99727 * 14 13 11 36 36 H 0.96998 * 119.99952 * 179.97438 * 18 17 15 37 37 H 1.09001 * 109.46993 * 25.28188 * 23 13 11 38 38 H 1.09001 * 109.47576 * 145.28649 * 23 13 11 39 39 H 1.09005 * 109.46837 * 299.99619 * 24 23 13 40 40 H 1.09001 * 109.47203 * 59.99319 * 24 23 13 41 41 H 1.07996 * 120.09394 * 0.02562 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5769 -1.1698 0.1131 6 6 4.2137 -0.1980 0.8768 7 6 5.5900 -0.1942 0.9918 8 6 6.3447 -1.1584 0.3479 9 9 7.6909 -1.1514 0.4621 10 6 5.7126 -2.1400 -0.4213 11 6 6.5138 -3.1714 -1.1113 12 8 7.2713 -3.8786 -0.4756 13 7 6.4050 -3.3285 -2.4454 14 6 5.5799 -2.4041 -3.2270 15 6 4.1702 -2.9313 -3.3037 16 1 3.9146 -3.8620 -2.8192 17 6 3.2068 -2.2254 -3.9926 18 7 3.5181 -1.0923 -4.5830 19 14 1.4596 -2.8792 -4.0884 20 1 0.6714 -2.3549 -2.9442 21 1 0.8356 -2.4395 -5.3621 22 1 1.4827 -4.3630 -4.0349 23 6 7.1120 -4.4236 -3.1141 24 6 8.4542 -3.9155 -3.6445 25 6 9.1648 -5.0160 -4.3159 26 7 9.7131 -5.8629 -4.8369 27 6 4.3218 -2.1372 -0.5404 28 1 -0.3634 -0.5138 0.8900 29 1 -0.3634 1.0277 0.0005 30 1 -0.3634 -0.5138 -0.8899 31 1 1.6989 -2.0055 -0.0772 32 1 3.6298 0.5570 1.3821 33 1 6.0787 0.5637 1.5861 34 1 5.5762 -1.4256 -2.7467 35 1 5.9893 -2.3135 -4.2330 36 1 2.8404 -0.5959 -5.0680 37 1 7.2847 -5.2320 -2.4036 38 1 6.5092 -4.7920 -3.9442 39 1 8.2815 -3.1071 -4.3550 40 1 9.0570 -3.5471 -2.8144 41 1 3.8277 -2.8895 -1.1373 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299375825.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:40 Heat of formation + Delta-G solvation = -77.448215 kcal Electronic energy + Delta-G solvation = -28910.839064 eV Core-core repulsion = 24704.878097 eV Total energy + Delta-G solvation = -4205.960967 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.87799 -41.60519 -40.84263 -38.97691 -37.94262 -36.82978 -35.64351 -34.71560 -33.14643 -31.65657 -31.57583 -29.30269 -28.96274 -26.16688 -25.06993 -24.20834 -23.49760 -21.86843 -20.38778 -18.92420 -18.76277 -18.51762 -18.25918 -18.18624 -17.50409 -17.21663 -16.95701 -16.44618 -16.28762 -16.06586 -15.82638 -15.53005 -15.16295 -14.83984 -14.71265 -14.42489 -14.31568 -14.12406 -13.94882 -13.67028 -13.59300 -13.51749 -13.30799 -13.21796 -13.00934 -12.92732 -12.70710 -12.55521 -12.45410 -12.00255 -11.83696 -11.61694 -11.28515 -11.09449 -10.84103 -10.50921 -9.96968 -9.58148 -9.02526 -8.11965 -6.23501 -0.09708 0.19829 1.42563 1.49345 1.52347 1.57611 1.59446 1.73722 1.76397 2.09400 2.23784 2.47817 2.68930 3.10778 3.21031 3.26810 3.54268 3.74087 3.92870 4.07149 4.10847 4.19230 4.32580 4.44125 4.52192 4.58623 4.65938 4.76027 4.84599 4.92702 5.00414 5.07146 5.11253 5.16560 5.27327 5.31900 5.38649 5.68674 5.80523 5.91347 6.10981 6.44231 6.46070 6.52274 6.83430 7.14593 7.17130 7.45079 8.93649 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010511 B = 0.005126 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2663.282489 B = 5461.242494 C = 7521.712138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.505 3.495 3 O -0.573 6.573 4 N -0.662 5.662 5 C 0.124 3.876 6 C -0.080 4.080 7 C -0.141 4.141 8 C 0.103 3.897 9 F -0.140 7.140 10 C -0.152 4.152 11 C 0.564 3.436 12 O -0.574 6.574 13 N -0.584 5.584 14 C 0.249 3.751 15 C -0.535 4.535 16 H 0.067 0.933 17 C 0.030 3.970 18 N -0.914 5.914 19 Si 0.936 3.064 20 H -0.250 1.250 21 H -0.298 1.298 22 H -0.268 1.268 23 C 0.123 3.877 24 C -0.033 4.033 25 C 0.246 3.754 26 N -0.486 5.486 27 C -0.056 4.056 28 H 0.125 0.875 29 H 0.098 0.902 30 H 0.100 0.900 31 H 0.425 0.575 32 H 0.148 0.852 33 H 0.166 0.834 34 H 0.020 0.980 35 H 0.035 0.965 36 H 0.263 0.737 37 H 0.083 0.917 38 H 0.095 0.905 39 H 0.128 0.872 40 H 0.117 0.883 41 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.435 1.403 9.410 11.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.296 3.704 3 O -0.451 6.451 4 N -0.308 5.308 5 C 0.029 3.971 6 C -0.100 4.100 7 C -0.160 4.160 8 C 0.083 3.917 9 F -0.119 7.119 10 C -0.157 4.157 11 C 0.353 3.647 12 O -0.456 6.456 13 N -0.313 5.313 14 C 0.128 3.872 15 C -0.573 4.573 16 H 0.085 0.915 17 C -0.171 4.171 18 N -0.552 5.552 19 Si 0.761 3.239 20 H -0.174 1.174 21 H -0.224 1.224 22 H -0.193 1.193 23 C -0.001 4.001 24 C -0.074 4.074 25 C -0.071 4.071 26 N -0.164 5.164 27 C -0.076 4.076 28 H 0.143 0.857 29 H 0.117 0.883 30 H 0.119 0.881 31 H 0.264 0.736 32 H 0.166 0.834 33 H 0.184 0.816 34 H 0.038 0.962 35 H 0.053 0.947 36 H 0.072 0.928 37 H 0.102 0.898 38 H 0.114 0.886 39 H 0.146 0.854 40 H 0.135 0.865 41 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -4.913 0.668 8.823 10.121 hybrid contribution -0.848 -0.134 -0.514 1.001 sum -5.761 0.534 8.310 10.125 Atomic orbital electron populations 1.21971 0.87065 1.06768 1.06581 1.21833 0.92627 0.82316 0.73655 1.90710 1.71800 1.32652 1.49984 1.43573 1.04174 1.10879 1.72147 1.17694 0.84335 0.97518 0.97514 1.21152 0.93828 0.98151 0.96873 1.21062 0.93618 0.99184 1.02106 1.17775 0.76968 0.97085 0.99914 1.91471 1.29692 1.96154 1.94585 1.19646 0.94767 0.98513 1.02747 1.18211 0.81083 0.82978 0.82462 1.90716 1.40133 1.48055 1.66650 1.48062 1.46784 1.30500 1.05930 1.19222 0.89285 0.87771 0.90877 1.21533 0.94319 1.07750 1.33736 0.91508 1.25542 1.02259 0.94648 0.94668 1.70023 1.35407 1.15474 1.34307 0.85886 0.80839 0.78982 0.78217 1.17398 1.22436 1.19253 1.21283 0.91209 0.89353 0.98304 1.19696 0.94950 0.91926 1.00876 1.29098 0.92411 0.93572 0.92010 1.81181 1.11382 1.12123 1.11756 1.21438 0.91336 1.00431 0.94438 0.85698 0.88318 0.88133 0.73639 0.83396 0.81614 0.96206 0.94732 0.92823 0.89839 0.88650 0.85369 0.86485 0.82331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.52 10.32 71.23 0.74 -1.79 16 2 C 0.50 13.29 7.67 87.66 0.67 13.96 16 3 O -0.57 -20.03 14.78 -3.07 -0.05 -20.08 16 4 N -0.66 -17.08 5.34 -303.57 -1.62 -18.70 16 5 C 0.12 3.90 6.27 38.08 0.24 4.14 16 6 C -0.08 -2.41 8.65 22.43 0.19 -2.22 16 7 C -0.14 -4.16 10.00 22.26 0.22 -3.93 16 8 C 0.10 3.61 7.28 22.67 0.17 3.77 16 9 F -0.14 -5.07 16.72 44.97 0.75 -4.32 16 10 C -0.15 -5.66 4.42 -20.07 -0.09 -5.75 16 11 C 0.56 21.92 6.81 86.75 0.59 22.51 16 12 O -0.57 -24.24 16.52 -3.95 -0.07 -24.31 16 13 N -0.58 -21.15 2.46 -829.72 -2.04 -23.18 16 14 C 0.25 10.32 4.75 85.63 0.41 10.72 16 15 C -0.54 -23.16 6.49 25.60 0.17 -23.00 16 16 H 0.07 2.83 7.20 -2.91 -0.02 2.80 16 17 C 0.03 1.37 5.46 84.66 0.46 1.84 16 18 N -0.91 -46.04 13.29 21.45 0.28 -45.76 16 19 Si 0.94 34.99 29.54 68.60 2.03 37.02 16 20 H -0.25 -8.11 7.11 99.48 0.71 -7.40 16 21 H -0.30 -11.83 7.11 99.48 0.71 -11.12 16 22 H -0.27 -9.83 7.11 99.48 0.71 -9.12 16 23 C 0.12 3.68 5.38 86.38 0.46 4.15 16 24 C -0.03 -0.83 6.03 28.79 0.17 -0.66 16 25 C 0.25 6.83 15.43 89.45 1.38 8.21 16 26 N -0.49 -15.86 18.53 20.00 0.37 -15.49 16 27 C -0.06 -1.95 7.80 22.65 0.18 -1.77 16 28 H 0.12 1.05 8.14 -2.38 -0.02 1.03 16 29 H 0.10 1.48 8.12 -2.38 -0.02 1.46 16 30 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.43 8.30 8.82 -92.70 -0.82 7.48 16 32 H 0.15 4.24 6.41 -2.91 -0.02 4.23 16 33 H 0.17 3.83 8.06 -2.91 -0.02 3.81 16 34 H 0.02 0.93 6.77 -2.39 -0.02 0.91 16 35 H 0.03 1.48 8.07 -2.39 -0.02 1.47 16 36 H 0.26 12.92 8.31 -92.71 -0.77 12.15 16 37 H 0.08 2.55 7.36 -2.39 -0.02 2.53 16 38 H 0.10 2.77 8.11 -2.39 -0.02 2.75 16 39 H 0.13 2.89 8.14 -2.38 -0.02 2.87 16 40 H 0.12 2.85 8.14 -2.39 -0.02 2.83 16 41 H 0.16 5.68 5.23 -2.91 -0.02 5.66 16 Total: -1.00 -64.81 366.28 5.91 -58.90 By element: Atomic # 1 Polarization: 25.45 SS G_CDS: 0.28 Total: 25.74 kcal Atomic # 6 Polarization: 24.22 SS G_CDS: 5.96 Total: 30.18 kcal Atomic # 7 Polarization: -100.13 SS G_CDS: -3.00 Total: -103.13 kcal Atomic # 8 Polarization: -44.27 SS G_CDS: -0.11 Total: -44.39 kcal Atomic # 9 Polarization: -5.07 SS G_CDS: 0.75 Total: -4.32 kcal Atomic # 14 Polarization: 34.99 SS G_CDS: 2.03 Total: 37.02 kcal Total: -64.81 5.91 -58.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299375825.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.550 kcal (2) G-P(sol) polarization free energy of solvation -64.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds