Wall clock time and date at job start Tue Mar 31 2020 19:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.46882 * 2 1 4 4 C 1.36944 * 119.99951 * 275.31593 * 3 2 1 5 5 H 1.07994 * 120.00253 * 327.50541 * 4 3 2 6 6 C 1.38817 * 119.99523 * 147.50078 * 4 3 2 7 7 N 1.31616 * 120.00124 * 342.33885 * 6 4 3 8 8 Si 1.86803 * 119.99735 * 162.34131 * 6 4 3 9 9 H 1.48494 * 109.47102 * 59.99920 * 8 6 4 10 10 H 1.48492 * 109.47014 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.46847 * 299.99957 * 8 6 4 12 12 C 1.46494 * 120.00157 * 95.32240 * 3 2 1 13 13 H 1.08996 * 109.47519 * 185.44611 * 12 3 2 14 14 C 1.53000 * 109.47298 * 305.44865 * 12 3 2 15 15 C 1.50709 * 109.47373 * 65.44910 * 12 3 2 16 16 O 1.21283 * 119.99282 * 359.97438 * 15 12 3 17 17 N 1.34775 * 120.00181 * 180.02562 * 15 12 3 18 18 C 1.38797 * 119.99653 * 180.02562 * 17 15 12 19 19 S 1.70088 * 124.60340 * 359.69325 * 18 17 15 20 20 C 1.76335 * 92.71448 * 179.97438 * 19 18 17 21 21 C 1.33075 * 110.72439 * 0.29604 * 20 19 18 22 22 C 1.36316 * 124.59740 * 179.97438 * 18 17 15 23 23 C 1.43205 * 123.33144 * 359.94983 * 22 18 17 24 24 N 7.88889 * 115.60611 * 61.10632 * 2 1 3 25 25 C 1.52604 * 110.21145 * 179.80396 * 21 20 19 26 26 C 1.54190 * 104.91908 * 342.53162 * 25 21 20 27 27 C 1.52383 * 138.82668 * 179.97438 * 20 19 18 28 28 H 1.09002 * 109.47211 * 299.99951 * 1 2 3 29 29 H 1.09000 * 109.47747 * 59.99910 * 1 2 3 30 30 H 1.09001 * 109.47048 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47007 * 120.00015 * 2 1 3 32 32 H 1.09002 * 109.47211 * 240.00049 * 2 1 3 33 33 H 0.97005 * 120.00112 * 179.97438 * 7 6 4 34 34 H 1.09004 * 109.46638 * 59.99943 * 14 12 3 35 35 H 1.08995 * 109.47308 * 179.97438 * 14 12 3 36 36 H 1.08998 * 109.47004 * 300.00164 * 14 12 3 37 37 H 0.96995 * 119.99677 * 359.97438 * 17 15 12 38 38 H 1.09002 * 110.35392 * 101.38946 * 25 21 20 39 39 H 1.09004 * 110.35236 * 223.67480 * 25 21 20 40 40 H 1.09000 * 110.99319 * 268.35228 * 26 25 21 41 41 H 1.08995 * 111.02762 * 144.53994 * 26 25 21 42 42 H 1.09000 * 110.35776 * 316.59101 * 27 20 19 43 43 H 1.08998 * 110.35871 * 78.77653 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.1429 2.0634 -1.1809 5 1 2.4015 1.5338 -2.0858 6 6 1.9366 3.4357 -1.2147 7 7 1.2960 4.0294 -0.2300 8 14 2.5682 4.4399 -2.6577 9 1 1.9415 3.9518 -3.9123 10 1 2.2215 5.8695 -2.4553 11 1 4.0432 4.2963 -2.7527 12 6 2.3733 2.0326 1.2632 13 1 2.6204 3.0776 1.0763 14 6 1.1890 1.9534 2.2285 15 6 3.5638 1.3360 1.8705 16 8 4.0658 0.3883 1.3039 17 7 4.0699 1.7654 3.0434 18 6 5.1666 1.1240 3.6024 19 16 5.9568 -0.2154 2.9135 20 6 7.1223 -0.3125 4.2332 21 6 6.8898 0.6356 5.1376 22 6 5.7532 1.4788 4.7806 23 6 5.2991 2.5707 5.5883 24 7 4.9394 3.4374 6.2285 25 6 7.9014 0.5379 6.2759 26 6 8.5020 -0.8769 6.1529 27 6 8.3154 -1.1642 4.6495 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.1521 4.9884 -0.2535 34 1 0.9420 0.9082 2.4154 35 1 1.4533 2.4376 3.1685 36 1 0.3280 2.4572 1.7893 37 1 3.6681 2.5230 3.4966 38 1 8.6798 1.2917 6.1572 39 1 7.4023 0.6554 7.2378 40 1 7.9453 -1.5915 6.7590 41 1 9.5581 -0.8782 6.4227 42 1 8.1013 -2.2209 4.4892 43 1 9.2046 -0.8694 4.0922 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331376924.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:17 Heat of formation + Delta-G solvation = 48.927953 kcal Electronic energy + Delta-G solvation = -26308.851712 eV Core-core repulsion = 22674.584002 eV Total energy + Delta-G solvation = -3634.267709 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.14698 -39.22128 -36.82089 -36.12988 -35.23181 -33.03642 -31.99842 -30.82795 -28.51158 -28.43263 -27.36585 -24.62342 -24.22176 -23.16714 -21.62398 -20.80757 -20.09398 -19.10242 -18.29383 -17.30666 -16.97467 -15.93375 -15.77199 -15.55781 -15.01185 -14.71191 -14.13436 -13.94544 -13.61718 -13.56499 -13.50833 -13.14613 -12.92391 -12.50825 -12.46430 -12.28696 -12.07419 -11.95491 -11.84106 -11.77598 -11.60466 -11.35998 -11.30424 -11.28406 -11.16839 -10.85775 -10.67073 -10.43388 -10.26944 -10.14342 -9.96977 -9.78940 -9.19360 -8.68915 -8.20317 -7.85460 -6.86387 -6.03311 -3.49268 0.86985 1.26442 1.95088 2.10633 2.78466 2.99947 3.05435 3.30969 3.35453 3.38213 3.59094 4.20316 4.33620 4.39154 4.50255 4.82425 4.93856 5.11008 5.20764 5.38139 5.40044 5.53112 5.55682 5.60233 5.66994 5.79219 5.98132 6.01612 6.02768 6.08631 6.18055 6.29585 6.34158 6.37117 6.44293 6.48453 6.65398 6.93747 6.97977 7.08818 7.24585 7.34052 7.64763 7.66976 8.24268 8.32087 8.98317 9.59513 10.14116 11.04165 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.015601 B = 0.003450 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.348234 B = 8113.814203 C = 8394.142361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.148 3.852 3 N -0.556 5.556 4 C -0.255 4.255 5 H 0.069 0.931 6 C 0.008 3.992 7 N -0.896 5.896 8 Si 0.903 3.097 9 H -0.280 1.280 10 H -0.289 1.289 11 H -0.282 1.282 12 C 0.173 3.827 13 H 0.136 0.864 14 C -0.142 4.142 15 C 0.481 3.519 16 O -0.495 6.495 17 N -0.640 5.640 18 C 0.082 3.918 19 S 0.343 5.657 20 C -0.289 4.289 21 C -0.066 4.066 22 C -0.132 4.132 23 C 0.282 3.718 24 N -0.439 5.439 25 C -0.059 4.059 26 C -0.118 4.118 27 C -0.036 4.036 28 H 0.049 0.951 29 H 0.055 0.945 30 H 0.032 0.968 31 H 0.040 0.960 32 H 0.042 0.958 33 H 0.259 0.741 34 H 0.041 0.959 35 H 0.037 0.963 36 H 0.086 0.914 37 H 0.417 0.583 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.073 0.927 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.264 -9.279 10.436 17.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.023 3.977 3 N -0.274 5.274 4 C -0.384 4.384 5 H 0.086 0.914 6 C -0.191 4.191 7 N -0.539 5.539 8 Si 0.733 3.267 9 H -0.206 1.206 10 H -0.215 1.215 11 H -0.208 1.208 12 C 0.060 3.940 13 H 0.153 0.847 14 C -0.201 4.201 15 C 0.269 3.731 16 O -0.369 6.369 17 N -0.284 5.284 18 C -0.141 4.141 19 S 0.607 5.393 20 C -0.406 4.406 21 C -0.078 4.078 22 C -0.153 4.153 23 C -0.033 4.033 24 N -0.116 5.116 25 C -0.098 4.098 26 C -0.156 4.156 27 C -0.075 4.075 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.051 0.949 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.105 0.895 37 H 0.254 0.746 38 H 0.099 0.901 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.098 0.902 42 H 0.092 0.908 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 9.641 -9.263 9.535 16.422 hybrid contribution 0.333 1.791 0.671 1.941 sum 9.974 -7.473 10.207 16.109 Atomic orbital electron populations 1.22387 0.99399 0.98659 1.02203 1.20796 0.91598 0.86350 0.98999 1.43539 1.71574 1.10452 1.01860 1.19151 1.41387 0.90401 0.87504 0.91368 1.25135 0.97846 0.98165 0.97939 1.69906 1.40527 1.10162 1.33327 0.86348 0.79132 0.79020 0.82241 1.20555 1.21469 1.20814 1.20448 0.87355 0.99664 0.86496 0.84747 1.22132 1.00542 1.00368 0.97082 1.24609 0.86743 0.84260 0.77533 1.90481 1.59929 1.27547 1.58903 1.44012 1.27456 1.33560 1.23414 1.21944 0.94647 1.01201 0.96300 1.84381 1.18144 1.20737 1.16056 1.26473 1.05886 1.05186 1.03059 1.20677 0.94505 0.94433 0.98162 1.15281 1.03317 1.00519 0.96163 1.25004 0.93116 0.92136 0.93049 1.81239 1.09321 1.11419 1.09636 1.21004 0.95433 0.97673 0.95690 1.22301 1.01197 0.96202 0.95925 1.20722 0.93277 0.98206 0.95280 0.93234 0.92627 0.94944 0.94131 0.93919 0.93132 0.93996 0.94397 0.89478 0.74579 0.90150 0.90946 0.90682 0.90232 0.90840 0.90312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.15 9.99 37.16 0.37 -2.78 16 2 C 0.15 3.05 5.03 -4.04 -0.02 3.03 16 3 N -0.56 -12.84 2.09 -166.98 -0.35 -13.19 16 4 C -0.25 -6.52 9.54 -15.05 -0.14 -6.66 16 5 H 0.07 1.77 7.89 -52.49 -0.41 1.35 16 6 C 0.01 0.22 4.88 -17.43 -0.09 0.13 16 7 N -0.90 -23.06 11.22 55.49 0.62 -22.44 16 8 Si 0.90 20.51 29.59 -169.99 -5.03 15.48 16 9 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 12 C 0.17 3.63 2.23 -69.08 -0.15 3.47 16 13 H 0.14 3.15 5.70 -51.93 -0.30 2.86 16 14 C -0.14 -2.64 7.93 37.16 0.29 -2.34 16 15 C 0.48 9.16 6.84 -10.98 -0.08 9.08 16 16 O -0.50 -10.14 12.49 5.55 0.07 -10.07 16 17 N -0.64 -10.36 5.26 -11.85 -0.06 -10.43 16 18 C 0.08 1.25 6.94 -15.09 -0.10 1.15 16 19 S 0.34 4.81 19.96 -107.50 -2.15 2.66 16 20 C -0.29 -3.40 7.30 -35.27 -0.26 -3.65 16 21 C -0.07 -0.81 6.64 -102.38 -0.68 -1.49 16 22 C -0.13 -1.89 5.89 -105.57 -0.62 -2.51 16 23 C 0.28 4.30 14.93 -22.47 -0.34 3.97 16 24 N -0.44 -7.29 18.54 41.84 0.78 -6.51 16 25 C -0.06 -0.55 6.81 -26.31 -0.18 -0.73 16 26 C -0.12 -0.84 7.13 -25.48 -0.18 -1.03 16 27 C -0.04 -0.30 6.81 -26.42 -0.18 -0.48 16 28 H 0.05 0.93 6.03 -51.93 -0.31 0.62 16 29 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.04 0.80 6.71 -51.93 -0.35 0.45 16 32 H 0.04 0.89 8.08 -51.93 -0.42 0.47 16 33 H 0.26 6.54 8.31 -40.82 -0.34 6.21 16 34 H 0.04 0.73 6.61 -51.93 -0.34 0.39 16 35 H 0.04 0.60 7.56 -51.93 -0.39 0.21 16 36 H 0.09 1.81 7.90 -51.93 -0.41 1.40 16 37 H 0.42 6.23 7.53 -40.82 -0.31 5.92 16 38 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 366.81 15.07 5.53 5.53 Total: -1.00 -27.74 366.81 -8.71 -36.45 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -5.76 Total: 3.35 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -2.35 Total: -0.84 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: 0.99 Total: -52.56 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.07 Total: -10.07 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.03 Total: 15.48 kcal Atomic # 16 Polarization: 4.81 SS G_CDS: -2.15 Total: 2.66 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -27.74 -8.71 -36.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331376924.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.378 kcal (2) G-P(sol) polarization free energy of solvation -27.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds