Wall clock time and date at job start Tue Mar 31 2020 19:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.46882 * 2 1 4 4 C 1.36944 * 119.99951 * 275.31593 * 3 2 1 5 5 H 1.07994 * 120.00253 * 327.50541 * 4 3 2 6 6 C 1.38817 * 119.99523 * 147.50078 * 4 3 2 7 7 N 1.31616 * 120.00124 * 342.33885 * 6 4 3 8 8 Si 1.86803 * 119.99735 * 162.34131 * 6 4 3 9 9 H 1.48494 * 109.47102 * 59.99920 * 8 6 4 10 10 H 1.48492 * 109.47014 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.46847 * 299.99957 * 8 6 4 12 12 C 1.46494 * 120.00157 * 95.32240 * 3 2 1 13 13 H 1.08996 * 109.47519 * 185.44611 * 12 3 2 14 14 C 1.53000 * 109.47298 * 305.44865 * 12 3 2 15 15 C 1.50709 * 109.47373 * 65.44910 * 12 3 2 16 16 O 1.21283 * 119.99282 * 359.97438 * 15 12 3 17 17 N 1.34775 * 120.00181 * 180.02562 * 15 12 3 18 18 C 1.38797 * 119.99653 * 180.02562 * 17 15 12 19 19 S 1.70088 * 124.60340 * 359.69325 * 18 17 15 20 20 C 1.76335 * 92.71448 * 179.97438 * 19 18 17 21 21 C 1.33075 * 110.72439 * 0.29604 * 20 19 18 22 22 C 1.36316 * 124.59740 * 179.97438 * 18 17 15 23 23 C 1.43205 * 123.33144 * 359.94983 * 22 18 17 24 24 N 7.88889 * 115.60611 * 61.10632 * 2 1 3 25 25 C 1.52604 * 110.21145 * 179.80396 * 21 20 19 26 26 C 1.54190 * 104.91908 * 342.53162 * 25 21 20 27 27 C 1.52383 * 138.82668 * 179.97438 * 20 19 18 28 28 H 1.09002 * 109.47211 * 299.99951 * 1 2 3 29 29 H 1.09000 * 109.47747 * 59.99910 * 1 2 3 30 30 H 1.09001 * 109.47048 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47007 * 120.00015 * 2 1 3 32 32 H 1.09002 * 109.47211 * 240.00049 * 2 1 3 33 33 H 0.97005 * 120.00112 * 179.97438 * 7 6 4 34 34 H 1.09004 * 109.46638 * 59.99943 * 14 12 3 35 35 H 1.08995 * 109.47308 * 179.97438 * 14 12 3 36 36 H 1.08998 * 109.47004 * 300.00164 * 14 12 3 37 37 H 0.96995 * 119.99677 * 359.97438 * 17 15 12 38 38 H 1.09002 * 110.35392 * 101.38946 * 25 21 20 39 39 H 1.09004 * 110.35236 * 223.67480 * 25 21 20 40 40 H 1.09000 * 110.99319 * 268.35228 * 26 25 21 41 41 H 1.08995 * 111.02762 * 144.53994 * 26 25 21 42 42 H 1.09000 * 110.35776 * 316.59101 * 27 20 19 43 43 H 1.08998 * 110.35871 * 78.77653 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.1429 2.0634 -1.1809 5 1 2.4015 1.5338 -2.0858 6 6 1.9366 3.4357 -1.2147 7 7 1.2960 4.0294 -0.2300 8 14 2.5682 4.4399 -2.6577 9 1 1.9415 3.9518 -3.9123 10 1 2.2215 5.8695 -2.4553 11 1 4.0432 4.2963 -2.7527 12 6 2.3733 2.0326 1.2632 13 1 2.6204 3.0776 1.0763 14 6 1.1890 1.9534 2.2285 15 6 3.5638 1.3360 1.8705 16 8 4.0658 0.3883 1.3039 17 7 4.0699 1.7654 3.0434 18 6 5.1666 1.1240 3.6024 19 16 5.9568 -0.2154 2.9135 20 6 7.1223 -0.3125 4.2332 21 6 6.8898 0.6356 5.1376 22 6 5.7532 1.4788 4.7806 23 6 5.2991 2.5707 5.5883 24 7 4.9394 3.4374 6.2285 25 6 7.9014 0.5379 6.2759 26 6 8.5020 -0.8769 6.1529 27 6 8.3154 -1.1642 4.6495 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.1521 4.9884 -0.2535 34 1 0.9420 0.9082 2.4154 35 1 1.4533 2.4376 3.1685 36 1 0.3280 2.4572 1.7893 37 1 3.6681 2.5230 3.4966 38 1 8.6798 1.2917 6.1572 39 1 7.4023 0.6554 7.2378 40 1 7.9453 -1.5915 6.7590 41 1 9.5581 -0.8782 6.4227 42 1 8.1013 -2.2209 4.4892 43 1 9.2046 -0.8694 4.0922 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331376924.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:16 Heat of formation + Delta-G solvation = 35.481850 kcal Electronic energy + Delta-G solvation = -26309.434778 eV Core-core repulsion = 22674.584002 eV Total energy + Delta-G solvation = -3634.850776 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.54939 -40.22848 -38.12681 -37.62518 -36.56914 -34.19811 -33.85681 -32.34097 -30.20904 -29.25111 -28.32646 -26.21477 -25.68436 -24.55640 -23.01575 -21.81561 -21.55163 -20.17479 -19.57041 -18.75221 -18.55424 -17.12080 -16.98075 -16.66079 -16.34909 -16.24760 -15.76718 -15.55732 -15.10105 -14.93737 -14.63374 -14.27237 -14.19175 -13.77832 -13.62768 -13.52145 -13.36652 -13.27290 -13.22039 -13.01685 -12.90403 -12.83417 -12.81546 -12.55292 -12.22232 -12.15878 -12.10741 -11.93729 -11.83938 -11.63478 -11.45310 -11.09551 -10.66712 -10.58008 -9.30519 -8.96297 -8.68508 -7.95187 -5.43153 -0.31981 0.16888 0.94656 1.04740 1.44886 1.49486 1.52866 1.55058 1.57527 1.75881 2.38409 2.49019 3.03888 3.21792 3.46812 3.53267 3.73106 3.87971 4.17493 4.28020 4.41821 4.45140 4.46970 4.60647 4.70483 4.80632 4.84954 4.87999 4.90683 4.92930 4.99274 5.01720 5.08433 5.23759 5.27283 5.29912 5.33783 5.42911 5.44857 5.52403 5.62054 5.69381 5.95573 6.38898 6.41656 6.81593 7.11597 7.76064 8.26883 9.09171 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.015601 B = 0.003450 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.348234 B = 8113.814203 C = 8394.142361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.149 3.851 3 N -0.572 5.572 4 C -0.268 4.268 5 H 0.057 0.943 6 C -0.028 4.028 7 N -0.910 5.910 8 Si 0.955 3.045 9 H -0.278 1.278 10 H -0.290 1.290 11 H -0.285 1.285 12 C 0.173 3.827 13 H 0.109 0.891 14 C -0.130 4.130 15 C 0.487 3.513 16 O -0.514 6.514 17 N -0.633 5.633 18 C 0.058 3.942 19 S 0.323 5.677 20 C -0.271 4.271 21 C -0.082 4.082 22 C -0.124 4.124 23 C 0.294 3.706 24 N -0.462 5.462 25 C -0.060 4.060 26 C -0.108 4.108 27 C -0.038 4.038 28 H 0.047 0.953 29 H 0.032 0.968 30 H 0.063 0.937 31 H 0.048 0.952 32 H 0.034 0.966 33 H 0.255 0.745 34 H 0.051 0.949 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.421 0.579 38 H 0.089 0.911 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.106 0.894 42 H 0.087 0.913 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.084 -10.587 11.999 20.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.024 3.976 3 N -0.291 5.291 4 C -0.399 4.399 5 H 0.074 0.926 6 C -0.225 4.225 7 N -0.553 5.553 8 Si 0.783 3.217 9 H -0.203 1.203 10 H -0.215 1.215 11 H -0.212 1.212 12 C 0.061 3.939 13 H 0.126 0.874 14 C -0.189 4.189 15 C 0.275 3.725 16 O -0.389 6.389 17 N -0.278 5.278 18 C -0.164 4.164 19 S 0.588 5.412 20 C -0.389 4.389 21 C -0.093 4.093 22 C -0.146 4.146 23 C -0.021 4.021 24 N -0.140 5.140 25 C -0.099 4.099 26 C -0.146 4.146 27 C -0.078 4.078 28 H 0.066 0.934 29 H 0.051 0.949 30 H 0.082 0.918 31 H 0.066 0.934 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.259 0.741 38 H 0.108 0.892 39 H 0.093 0.907 40 H 0.100 0.900 41 H 0.124 0.876 42 H 0.106 0.894 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 11.472 -10.583 11.127 19.168 hybrid contribution -0.120 2.132 0.279 2.154 sum 11.352 -8.451 11.406 18.177 Atomic orbital electron populations 1.22245 0.98044 1.00257 1.00913 1.20827 0.92599 0.85246 0.98932 1.43666 1.72544 1.11101 1.01835 1.19254 1.41373 0.90939 0.88294 0.92562 1.25639 0.98280 0.98752 0.99866 1.70012 1.41191 1.09866 1.34273 0.85551 0.78231 0.77701 0.80214 1.20332 1.21540 1.21161 1.20312 0.88916 0.98186 0.86515 0.87421 1.21966 0.98665 1.00906 0.97318 1.23826 0.86367 0.84000 0.78317 1.90482 1.60407 1.28230 1.59765 1.43531 1.27922 1.33647 1.22700 1.22025 0.94992 1.02259 0.97131 1.84397 1.19018 1.20355 1.17468 1.26827 1.05709 1.05237 1.01080 1.21081 0.94479 0.94009 0.99741 1.15537 1.03602 1.00039 0.95433 1.25135 0.92459 0.91916 0.92579 1.81248 1.10113 1.12126 1.10563 1.21162 0.94807 0.99524 0.94445 1.22341 1.02818 0.94648 0.94814 1.20958 0.92032 0.98420 0.96358 0.93416 0.94895 0.91847 0.93367 0.94709 0.93548 0.93012 0.92037 0.91873 0.74076 0.89229 0.90676 0.89951 0.87591 0.89407 0.88842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.81 9.99 71.98 0.72 -5.09 16 2 C 0.15 6.16 5.03 86.38 0.43 6.60 16 3 N -0.57 -26.95 2.09 -682.21 -1.43 -28.38 16 4 C -0.27 -14.07 9.54 84.03 0.80 -13.27 16 5 H 0.06 3.01 7.89 -2.91 -0.02 2.99 16 6 C -0.03 -1.44 4.88 84.86 0.41 -1.02 16 7 N -0.91 -47.84 11.22 21.65 0.24 -47.60 16 8 Si 0.95 42.86 29.59 68.60 2.03 44.89 16 9 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 10 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 11 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 12 C 0.17 7.36 2.23 44.25 0.10 7.46 16 13 H 0.11 5.21 5.70 -2.39 -0.01 5.20 16 14 C -0.13 -4.81 7.93 71.98 0.57 -4.24 16 15 C 0.49 18.73 6.84 87.66 0.60 19.33 16 16 O -0.51 -21.20 12.49 -3.04 -0.04 -21.24 16 17 N -0.63 -20.50 5.26 -309.78 -1.63 -22.13 16 18 C 0.06 1.73 6.94 83.14 0.58 2.31 16 19 S 0.32 8.77 19.96 -56.49 -1.13 7.65 16 20 C -0.27 -5.73 7.30 25.07 0.18 -5.55 16 21 C -0.08 -1.84 6.64 -18.41 -0.12 -1.96 16 22 C -0.12 -3.42 5.89 -20.48 -0.12 -3.54 16 23 C 0.29 8.70 14.93 88.33 1.32 10.02 16 24 N -0.46 -15.04 18.54 19.01 0.35 -14.69 16 25 C -0.06 -0.93 6.81 30.87 0.21 -0.72 16 26 C -0.11 -1.09 7.13 31.40 0.22 -0.86 16 27 C -0.04 -0.50 6.81 30.79 0.21 -0.29 16 28 H 0.05 1.78 6.03 -2.39 -0.01 1.76 16 29 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.05 1.90 6.71 -2.39 -0.02 1.88 16 32 H 0.03 1.46 8.08 -2.39 -0.02 1.44 16 33 H 0.26 13.16 8.31 -92.70 -0.77 12.39 16 34 H 0.05 1.79 6.61 -2.38 -0.02 1.77 16 35 H 0.06 1.93 7.56 -2.39 -0.02 1.92 16 36 H 0.06 2.66 7.90 -2.39 -0.02 2.64 16 37 H 0.42 12.60 7.53 -92.71 -0.70 11.90 16 38 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 40 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.11 0.58 8.14 -2.39 -0.02 0.57 16 42 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -60.43 366.81 4.88 -55.56 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: 0.36 Total: 16.78 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: 6.12 Total: 9.16 kcal Atomic # 7 Polarization: -110.33 SS G_CDS: -2.46 Total: -112.80 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: -0.04 Total: -21.24 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Atomic # 16 Polarization: 8.77 SS G_CDS: -1.13 Total: 7.65 kcal Total: -60.43 4.88 -55.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331376924.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.038 kcal (2) G-P(sol) polarization free energy of solvation -60.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds