Wall clock time and date at job start Tue Mar 31 2020 19:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46507 * 109.47259 * 2 1 4 4 C 1.36932 * 119.99933 * 88.17508 * 3 2 1 5 5 H 1.08001 * 120.00105 * 221.64687 * 4 3 2 6 6 C 1.38809 * 120.00073 * 41.64282 * 4 3 2 7 7 N 1.31620 * 120.00305 * 213.09662 * 6 4 3 8 8 Si 1.86808 * 119.99876 * 33.10019 * 6 4 3 9 9 H 1.48493 * 109.47109 * 93.93923 * 8 6 4 10 10 H 1.48496 * 109.46952 * 213.94014 * 8 6 4 11 11 H 1.48505 * 109.46844 * 333.93487 * 8 6 4 12 12 C 1.46500 * 119.99691 * 267.90187 * 3 2 1 13 13 H 1.09005 * 109.46686 * 174.26935 * 12 3 2 14 14 C 1.52993 * 109.47301 * 54.27003 * 12 3 2 15 15 C 1.50695 * 109.46938 * 294.26807 * 12 3 2 16 16 O 1.21285 * 120.00661 * 14.88421 * 15 12 3 17 17 N 1.34784 * 119.99830 * 194.88399 * 15 12 3 18 18 C 1.38802 * 119.99830 * 180.02562 * 17 15 12 19 19 S 1.70084 * 124.60039 * 0.02562 * 18 17 15 20 20 C 1.76335 * 92.71324 * 179.97438 * 19 18 17 21 21 C 1.33074 * 110.72489 * 0.02562 * 20 19 18 22 22 C 1.36308 * 124.59640 * 179.72720 * 18 17 15 23 23 C 1.43200 * 123.33458 * 359.97438 * 22 18 17 24 24 N 8.01877 * 118.61758 * 306.47810 * 2 1 3 25 25 C 1.52605 * 110.21086 * 180.02562 * 21 20 19 26 26 C 1.54175 * 104.92036 * 17.47077 * 25 21 20 27 27 C 1.52386 * 138.83047 * 180.02562 * 20 19 18 28 28 H 1.09005 * 109.46953 * 305.56014 * 1 2 3 29 29 H 1.09004 * 109.46812 * 65.55654 * 1 2 3 30 30 H 1.08991 * 109.47532 * 185.56048 * 1 2 3 31 31 H 1.09004 * 109.47090 * 240.00157 * 2 1 3 32 32 H 1.08996 * 109.47109 * 119.99743 * 2 1 3 33 33 H 0.97001 * 119.99783 * 180.02562 * 7 6 4 34 34 H 1.09003 * 109.47089 * 179.97438 * 14 12 3 35 35 H 1.09001 * 109.47573 * 299.99923 * 14 12 3 36 36 H 1.09004 * 109.47552 * 59.99744 * 14 12 3 37 37 H 0.96997 * 119.99814 * 0.02562 * 17 15 12 38 38 H 1.09003 * 110.35220 * 136.33489 * 25 21 20 39 39 H 1.08997 * 110.35021 * 258.50397 * 25 21 20 40 40 H 1.09009 * 110.99295 * 91.64958 * 26 25 21 41 41 H 1.08999 * 110.99810 * 215.43436 * 26 25 21 42 42 H 1.08993 * 110.35967 * 281.38757 * 27 20 19 43 43 H 1.09006 * 110.35361 * 43.68071 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2110 2.0393 1.1853 5 1 1.9135 3.0729 1.2836 6 6 2.7885 1.3780 2.2604 7 7 2.4242 1.6765 3.4895 8 14 4.0830 0.0644 1.9630 9 1 5.4345 0.6749 2.0396 10 1 3.9592 -0.9953 2.9958 11 1 3.8841 -0.5307 0.6170 12 6 2.3063 2.0563 -1.2679 13 1 2.5586 3.0991 -1.0752 14 6 1.0747 1.9885 -2.1730 15 6 3.4669 1.3759 -1.9469 16 8 3.8275 0.2786 -1.5771 17 7 4.1042 1.9868 -2.9654 18 6 5.1728 1.3599 -3.5912 19 16 5.7738 -0.1744 -3.1699 20 6 7.0209 -0.1204 -4.4155 21 6 6.9557 1.0201 -5.0980 22 6 5.8792 1.8879 -4.6305 23 6 5.5954 3.1686 -5.2048 24 7 5.3707 4.1849 -5.6601 25 6 8.0388 1.0541 -6.1725 26 6 8.4840 -0.4131 -6.3340 27 6 8.1531 -0.9929 -4.9437 28 1 -0.3633 0.5977 0.8361 29 1 -0.3633 0.4253 -0.9356 30 1 -0.3634 -1.0227 0.0996 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.8281 1.2146 4.2407 34 1 1.2889 2.4912 -3.1162 35 1 0.8224 0.9458 -2.3658 36 1 0.2352 2.4806 -1.6819 37 1 3.8161 2.8646 -3.2610 38 1 7.6310 1.4320 -7.1100 39 1 8.8757 1.6722 -5.8475 40 1 7.9081 -0.9123 -7.1134 41 1 9.5525 -0.4767 -6.5396 42 1 9.0211 -0.9259 -4.2879 43 1 7.8237 -2.0281 -5.0336 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331376926.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:20 Heat of formation + Delta-G solvation = 37.514294 kcal Electronic energy + Delta-G solvation = -26404.691211 eV Core-core repulsion = 22769.928568 eV Total energy + Delta-G solvation = -3634.762643 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.61011 -40.26750 -38.22275 -37.65173 -36.58061 -34.43027 -33.99101 -32.41067 -30.62380 -29.28144 -28.39525 -26.18189 -25.61756 -24.50651 -23.41419 -21.85525 -21.62584 -20.16219 -19.40138 -18.86508 -18.52307 -17.39360 -16.98338 -16.82395 -16.63046 -16.19138 -16.00723 -15.55663 -15.07435 -14.87226 -14.64238 -14.50039 -14.27815 -13.93421 -13.78380 -13.62501 -13.48190 -13.43298 -13.28007 -13.20733 -12.92463 -12.86283 -12.74895 -12.67327 -12.29080 -12.22809 -12.02303 -11.95995 -11.81424 -11.60172 -11.31643 -11.11535 -10.61841 -10.60871 -9.34032 -8.98600 -8.74962 -8.32582 -5.63589 -0.33538 0.14379 0.92626 1.01775 1.33661 1.42281 1.50479 1.56759 1.69523 1.72913 2.38206 2.45900 2.92197 3.02455 3.31399 3.45119 3.69650 3.76182 4.15312 4.25290 4.26580 4.30772 4.39558 4.45777 4.67949 4.80262 4.81543 4.83671 4.88232 4.90191 4.95315 4.98727 4.99632 5.11154 5.21682 5.26303 5.28773 5.37049 5.40279 5.42064 5.63237 5.88587 5.94180 6.20436 6.41531 6.80832 6.98091 7.58028 8.03623 8.85502 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.015618 B = 0.003881 C = 0.003503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.326455 B = 7213.280174 C = 7990.695509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.146 3.854 3 N -0.578 5.578 4 C -0.274 4.274 5 H 0.051 0.949 6 C 0.017 3.983 7 N -0.919 5.919 8 Si 0.882 3.118 9 H -0.307 1.307 10 H -0.305 1.305 11 H -0.208 1.208 12 C 0.152 3.848 13 H 0.102 0.898 14 C -0.146 4.146 15 C 0.485 3.515 16 O -0.510 6.510 17 N -0.630 5.630 18 C 0.063 3.937 19 S 0.308 5.692 20 C -0.272 4.272 21 C -0.081 4.081 22 C -0.121 4.121 23 C 0.295 3.705 24 N -0.459 5.459 25 C -0.060 4.060 26 C -0.107 4.107 27 C -0.040 4.040 28 H 0.033 0.967 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.021 0.979 33 H 0.263 0.737 34 H 0.082 0.918 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.425 0.575 38 H 0.077 0.923 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.104 0.896 42 H 0.090 0.910 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.660 -6.019 -21.211 23.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.022 3.978 3 N -0.299 5.299 4 C -0.403 4.403 5 H 0.068 0.932 6 C -0.184 4.184 7 N -0.559 5.559 8 Si 0.709 3.291 9 H -0.235 1.235 10 H -0.233 1.233 11 H -0.130 1.130 12 C 0.041 3.959 13 H 0.120 0.880 14 C -0.204 4.204 15 C 0.272 3.728 16 O -0.384 6.384 17 N -0.276 5.276 18 C -0.159 4.159 19 S 0.573 5.427 20 C -0.389 4.389 21 C -0.092 4.092 22 C -0.143 4.143 23 C -0.019 4.019 24 N -0.137 5.137 25 C -0.099 4.099 26 C -0.146 4.146 27 C -0.079 4.079 28 H 0.052 0.948 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.040 0.960 33 H 0.073 0.927 34 H 0.100 0.900 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.264 0.736 38 H 0.095 0.905 39 H 0.107 0.893 40 H 0.101 0.899 41 H 0.123 0.877 42 H 0.109 0.891 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 8.021 -6.322 -20.259 22.687 hybrid contribution 0.944 1.043 -0.046 1.408 sum 8.965 -5.279 -20.305 22.815 Atomic orbital electron populations 1.22281 0.97176 1.00696 1.01628 1.21072 0.93165 0.84612 0.98985 1.44089 1.72939 1.12590 1.00240 1.18527 1.36018 0.97825 0.87977 0.93175 1.25995 0.98368 0.99383 0.94682 1.70112 1.41252 1.45036 0.99513 0.86744 0.80994 0.80454 0.80898 1.23503 1.23257 1.13014 1.20952 0.90844 0.97166 0.86950 0.88009 1.22172 0.96571 1.03030 0.98650 1.23770 0.84978 0.86491 0.77589 1.90584 1.65174 1.21207 1.61458 1.43535 1.28855 1.22174 1.33027 1.21899 0.94767 1.01980 0.97257 1.84582 1.22240 1.06585 1.29313 1.26775 1.05638 1.02729 1.03788 1.21111 0.95674 0.92201 1.00211 1.15480 1.04097 0.92212 1.02499 1.25039 0.92593 0.91752 0.92551 1.81263 1.09900 1.12118 1.10457 1.21153 0.94251 0.99304 0.95206 1.22342 1.03243 0.93018 0.96002 1.20967 0.92839 0.97820 0.96320 0.94774 0.91329 0.92342 0.92016 0.96015 0.92739 0.89964 0.91936 0.90745 0.73604 0.90469 0.89271 0.89853 0.87706 0.89121 0.89548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.56 9.92 71.98 0.71 -4.85 16 2 C 0.15 5.96 3.69 86.38 0.32 6.28 16 3 N -0.58 -24.84 1.71 -682.21 -1.17 -26.01 16 4 C -0.27 -14.51 9.65 84.03 0.81 -13.70 16 5 H 0.05 2.88 8.06 -2.91 -0.02 2.86 16 6 C 0.02 0.93 5.04 84.86 0.43 1.36 16 7 N -0.92 -55.55 13.97 21.65 0.30 -55.25 16 8 Si 0.88 44.72 26.39 68.60 1.81 46.53 16 9 H -0.31 -16.09 7.11 99.48 0.71 -15.38 16 10 H -0.30 -15.70 7.11 99.48 0.71 -15.00 16 11 H -0.21 -9.99 4.45 99.48 0.44 -9.55 16 12 C 0.15 5.08 3.11 44.24 0.14 5.22 16 13 H 0.10 3.31 7.90 -2.38 -0.02 3.29 16 14 C -0.15 -3.69 7.98 71.98 0.57 -3.12 16 15 C 0.48 15.84 6.95 87.65 0.61 16.45 16 16 O -0.51 -19.35 10.31 -3.05 -0.03 -19.38 16 17 N -0.63 -16.96 5.36 -309.79 -1.66 -18.63 16 18 C 0.06 1.69 6.94 83.14 0.58 2.27 16 19 S 0.31 8.15 19.96 -56.49 -1.13 7.02 16 20 C -0.27 -5.61 7.30 25.07 0.18 -5.42 16 21 C -0.08 -1.71 6.64 -18.40 -0.12 -1.83 16 22 C -0.12 -3.01 5.89 -20.48 -0.12 -3.13 16 23 C 0.30 7.75 14.92 88.33 1.32 9.06 16 24 N -0.46 -13.30 18.54 19.00 0.35 -12.95 16 25 C -0.06 -0.86 6.81 30.86 0.21 -0.65 16 26 C -0.11 -1.04 7.13 31.41 0.22 -0.82 16 27 C -0.04 -0.53 6.81 30.81 0.21 -0.32 16 28 H 0.03 1.36 8.14 -2.38 -0.02 1.34 16 29 H 0.07 2.05 5.81 -2.39 -0.01 2.03 16 30 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.06 2.37 6.30 -2.39 -0.02 2.35 16 32 H 0.02 1.00 4.79 -2.39 -0.01 0.99 16 33 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 34 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.06 1.59 6.39 -2.39 -0.02 1.58 16 36 H 0.07 1.93 8.04 -2.38 -0.02 1.91 16 37 H 0.42 9.54 8.11 -92.71 -0.75 8.79 16 38 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.08 0.71 8.14 -2.38 -0.02 0.69 16 41 H 0.10 0.56 8.14 -2.39 -0.02 0.55 16 42 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 Total: -1.00 -68.02 360.68 4.59 -63.43 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: 0.04 Total: 8.42 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: 6.07 Total: 6.80 kcal Atomic # 7 Polarization: -110.66 SS G_CDS: -2.17 Total: -112.83 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: -0.03 Total: -19.38 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 1.81 Total: 46.53 kcal Atomic # 16 Polarization: 8.15 SS G_CDS: -1.13 Total: 7.02 kcal Total: -68.02 4.59 -63.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331376926.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.942 kcal (2) G-P(sol) polarization free energy of solvation -68.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds