Wall clock time and date at job start Tue Mar 31 2020 18:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46509 * 109.46973 * 2 1 4 4 C 1.46496 * 120.00159 * 274.06339 * 3 2 1 5 5 C 1.50699 * 109.47264 * 280.93181 * 4 3 2 6 6 H 1.08007 * 120.00114 * 3.25900 * 5 4 3 7 7 C 1.37875 * 120.00115 * 183.25840 * 5 4 3 8 8 N 1.31519 * 120.00117 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00102 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46968 * 60.00086 * 9 7 5 11 11 H 1.48500 * 109.47066 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47151 * 300.00179 * 9 7 5 13 13 S 1.65600 * 119.99512 * 94.06678 * 3 2 1 14 14 O 1.42097 * 106.40379 * 336.46793 * 13 3 2 15 15 O 1.42105 * 106.39955 * 203.54817 * 13 3 2 16 16 N 1.65594 * 107.21824 * 90.00912 * 13 3 2 17 17 C 1.46503 * 120.00286 * 65.59722 * 16 13 3 18 18 C 1.50694 * 109.47350 * 164.32613 * 17 16 13 19 19 N 1.31047 * 126.46271 * 90.25261 * 18 17 16 20 20 C 1.35018 * 105.59088 * 180.12027 * 19 18 17 21 21 N 1.38850 * 126.38571 * 179.90185 * 20 19 18 22 22 C 1.46492 * 120.00068 * 179.71490 * 21 20 19 23 23 C 1.46506 * 119.99884 * 359.71895 * 21 20 19 24 24 N 1.30631 * 107.22676 * 359.64273 * 20 19 18 25 25 O 1.21289 * 110.12607 * 0.22355 * 24 20 19 26 26 H 1.09002 * 109.47159 * 185.04991 * 1 2 3 27 27 H 1.09006 * 109.46974 * 305.04712 * 1 2 3 28 28 H 1.09003 * 109.47355 * 65.04694 * 1 2 3 29 29 H 1.09007 * 109.46929 * 240.00724 * 2 1 3 30 30 H 1.08990 * 109.47221 * 120.00291 * 2 1 3 31 31 H 1.09002 * 109.47009 * 40.93147 * 4 3 2 32 32 H 1.09004 * 109.46901 * 160.93064 * 4 3 2 33 33 H 0.96999 * 120.00147 * 179.97438 * 8 7 5 34 34 H 0.97002 * 120.00520 * 245.59750 * 16 13 3 35 35 H 1.09005 * 109.46839 * 44.32728 * 17 16 13 36 36 H 1.09003 * 109.47255 * 284.33014 * 17 16 13 37 37 H 1.09007 * 109.47600 * 270.00087 * 22 21 20 38 38 H 1.09002 * 109.47266 * 150.00252 * 22 21 20 39 39 H 1.08999 * 109.47246 * 30.00034 * 22 21 20 40 40 H 1.09003 * 109.46689 * 179.97438 * 23 21 20 41 41 H 1.08993 * 109.46875 * 299.99506 * 23 21 20 42 42 H 1.09006 * 109.47178 * 59.99773 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1777 2.1019 -1.2655 5 6 3.4575 1.6684 -1.9327 6 1 4.0625 0.8922 -1.4877 7 6 3.8562 2.2626 -3.1112 8 7 3.1198 3.2082 -3.6529 9 14 5.4430 1.7258 -3.9379 10 1 5.3620 0.2815 -4.2737 11 1 5.6439 2.5122 -5.1814 12 1 6.5840 1.9563 -3.0159 13 16 2.3901 2.1280 1.4306 14 8 1.6494 1.4546 2.4391 15 8 2.2870 3.5251 1.1926 16 7 3.9878 1.8233 1.7418 17 6 5.0228 2.3683 0.8597 18 6 6.3618 2.2871 1.5463 19 7 7.2090 1.2891 1.4853 20 6 8.2579 1.6563 2.2521 21 7 9.4050 0.9109 2.4902 22 6 10.4648 1.4506 3.3454 23 6 9.5553 -0.4153 1.8861 24 7 7.9949 2.8458 2.7236 25 8 6.9116 3.2213 2.3281 26 1 -0.3633 -1.0237 0.0905 27 1 -0.3633 0.5902 0.8414 28 1 -0.3634 0.4336 -0.9317 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 1.3340 1.8797 -1.9189 32 1 2.2143 3.1738 -1.0711 33 1 3.4004 3.6265 -4.4818 34 1 4.2385 1.2839 2.5080 35 1 4.7942 3.4094 0.6313 36 1 5.0529 1.7917 -0.0648 37 1 11.1746 2.0096 2.7355 38 1 10.9815 0.6310 3.8448 39 1 10.0271 2.1130 4.0923 40 1 10.5122 -0.8439 2.1842 41 1 8.7459 -1.0623 2.2242 42 1 9.5199 -0.3262 0.8003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336911430.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:24 Heat of formation + Delta-G solvation = 13.229561 kcal Electronic energy + Delta-G solvation = -27779.723466 eV Core-core repulsion = 23733.058496 eV Total energy + Delta-G solvation = -4046.664971 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.130 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -45.23800 -37.60151 -36.80014 -36.15282 -35.79581 -35.30857 -34.32029 -32.78077 -31.59945 -29.97844 -28.54470 -26.82922 -26.46020 -25.93322 -23.20390 -22.99088 -21.76585 -21.16982 -19.10023 -18.00029 -17.90674 -17.12600 -16.94920 -16.53367 -16.10490 -15.91119 -15.31820 -15.11130 -14.92931 -14.54161 -14.10352 -13.78180 -13.35040 -13.28376 -12.91041 -12.87794 -12.72915 -12.25474 -12.16976 -12.09772 -12.01394 -11.86441 -11.73803 -11.70159 -11.53548 -11.39971 -11.09271 -11.00478 -10.84828 -10.55495 -10.42987 -10.37132 -10.09205 -9.89081 -9.30725 -8.56962 -8.18923 -8.13020 -6.18652 -4.26838 0.98120 1.42433 2.37694 2.51864 2.97836 3.22586 3.28893 3.30673 3.47461 3.93709 4.05516 4.29942 4.51211 4.84938 4.96822 5.06177 5.11331 5.14712 5.22399 5.38567 5.38974 5.43611 5.56977 5.60592 5.67309 5.76888 5.86715 5.98062 6.06382 6.11207 6.32227 6.63872 6.67397 6.68272 6.96318 7.05430 7.31805 7.36684 7.59036 7.78007 8.07468 8.43473 8.78523 9.40121 10.88618 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010248 B = 0.004679 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2731.631198 B = 5982.864083 C = 7565.332223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.130 3.870 3 N -0.989 5.989 4 C 0.241 3.759 5 C -0.549 4.549 6 H 0.066 0.934 7 C 0.070 3.930 8 N -0.883 5.883 9 Si 0.888 3.112 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.274 1.274 13 S 2.787 3.213 14 O -0.991 6.991 15 O -0.973 6.973 16 N -1.127 6.127 17 C 0.210 3.790 18 C 0.206 3.794 19 N -0.493 5.493 20 C 0.420 3.580 21 N -0.593 5.593 22 C 0.108 3.892 23 C 0.111 3.889 24 N -0.437 5.437 25 O 0.066 5.934 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.083 0.917 30 H 0.063 0.937 31 H 0.037 0.963 32 H 0.056 0.944 33 H 0.266 0.734 34 H 0.412 0.588 35 H 0.118 0.882 36 H 0.137 0.863 37 H 0.051 0.949 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.059 0.941 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.537 -6.601 10.083 14.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.004 3.996 3 N -0.831 5.831 4 C 0.119 3.881 5 C -0.588 4.588 6 H 0.084 0.916 7 C -0.135 4.135 8 N -0.520 5.520 9 Si 0.715 3.285 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.199 1.199 13 S 2.794 3.206 14 O -0.975 6.975 15 O -0.957 6.957 16 N -0.886 5.886 17 C 0.083 3.917 18 C -0.016 4.016 19 N -0.234 5.234 20 C 0.060 3.940 21 N -0.321 5.321 22 C -0.035 4.035 23 C -0.031 4.031 24 N -0.165 5.165 25 O 0.022 5.978 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.101 0.899 30 H 0.081 0.919 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.244 0.756 35 H 0.136 0.864 36 H 0.155 0.845 37 H 0.069 0.931 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.096 0.904 41 H 0.078 0.922 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.612 -5.797 10.672 14.888 hybrid contribution 1.334 -0.783 -0.630 1.670 sum 9.946 -6.580 10.043 15.591 Atomic orbital electron populations 1.22201 0.96897 1.01378 1.02380 1.20994 0.93630 0.82645 1.02340 1.57732 1.78337 1.23266 1.23800 1.19262 0.97336 0.92587 0.78896 1.21506 1.07498 1.21651 1.08114 0.91632 1.24932 0.97006 0.94642 0.96885 1.69916 1.37941 1.24541 1.19647 0.86721 0.83739 0.78847 0.79172 1.20099 1.21179 1.19918 1.01803 0.72205 0.73774 0.72786 1.93569 1.68948 1.76444 1.58577 1.93597 1.85524 1.30930 1.85607 1.56135 1.24956 1.68338 1.39149 1.20023 0.76031 1.03875 0.91797 1.28610 0.98014 0.83363 0.91656 1.71893 1.02040 1.27113 1.22339 1.22023 0.90084 0.88528 0.93372 1.45024 1.14679 1.17643 1.54758 1.21639 0.89013 0.99361 0.93493 1.21600 1.01830 0.81290 0.98423 1.74792 1.00768 1.14204 1.26708 1.85290 1.22965 1.40670 1.48925 0.92368 0.92656 0.92098 0.89881 0.91891 0.94460 0.92564 0.92366 0.75603 0.86412 0.84531 0.93062 0.90793 0.91050 0.90401 0.92246 0.92171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.54 10.24 37.16 0.38 -2.16 16 2 C 0.13 2.11 6.01 -4.04 -0.02 2.09 16 3 N -0.99 -18.66 2.84 -115.66 -0.33 -18.99 16 4 C 0.24 5.46 5.48 -5.20 -0.03 5.43 16 5 C -0.55 -12.95 7.94 -34.44 -0.27 -13.23 16 6 H 0.07 1.47 6.74 -52.48 -0.35 1.12 16 7 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.88 -23.72 13.29 55.43 0.74 -22.99 16 9 Si 0.89 19.61 29.54 -169.99 -5.02 14.59 16 10 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 11 H -0.29 -6.41 7.11 56.52 0.40 -6.00 16 12 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 13 S 2.79 51.03 6.11 -107.50 -0.66 50.38 16 14 O -0.99 -18.93 17.09 -57.17 -0.98 -19.91 16 15 O -0.97 -20.84 16.09 -57.17 -0.92 -21.76 16 16 N -1.13 -17.45 6.04 -11.65 -0.07 -17.52 16 17 C 0.21 3.42 6.78 -5.20 -0.04 3.39 16 18 C 0.21 3.33 7.90 -12.99 -0.10 3.23 16 19 N -0.49 -8.12 11.25 -12.68 -0.14 -8.26 16 20 C 0.42 6.55 8.35 -321.18 -2.68 3.87 16 21 N -0.59 -7.21 3.39 -193.16 -0.65 -7.86 16 22 C 0.11 0.96 10.56 59.84 0.63 1.59 16 23 C 0.11 1.06 10.53 59.85 0.63 1.69 16 24 N -0.44 -7.14 11.55 28.63 0.33 -6.81 16 25 O 0.07 1.09 11.29 18.08 0.20 1.29 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.05 0.86 8.11 -51.93 -0.42 0.44 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.08 1.35 8.05 -51.92 -0.42 0.93 16 30 H 0.06 0.91 7.64 -51.93 -0.40 0.51 16 31 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.06 1.40 6.83 -51.93 -0.35 1.05 16 33 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 34 H 0.41 5.50 8.65 -34.47 -0.30 5.20 16 35 H 0.12 1.91 7.72 -51.93 -0.40 1.51 16 36 H 0.14 2.39 5.58 -51.93 -0.29 2.10 16 37 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.44 7.92 -51.93 -0.41 0.03 16 39 H 0.07 0.70 7.69 -51.93 -0.40 0.30 16 40 H 0.08 0.48 7.79 -51.93 -0.40 0.08 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 368.93 15.07 5.56 5.56 Total: -1.00 -31.15 368.93 -9.36 -40.51 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -5.82 Total: 4.22 kcal Atomic # 6 Polarization: 9.15 SS G_CDS: -1.60 Total: 7.55 kcal Atomic # 7 Polarization: -82.30 SS G_CDS: -0.13 Total: -82.43 kcal Atomic # 8 Polarization: -38.68 SS G_CDS: -1.69 Total: -40.37 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.02 Total: 14.59 kcal Atomic # 16 Polarization: 51.03 SS G_CDS: -0.66 Total: 50.38 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.15 -9.36 -40.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336911430.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.737 kcal (2) G-P(sol) polarization free energy of solvation -31.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds