Wall clock time and date at job start Tue Mar 31 2020 18:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46509 * 109.46973 * 2 1 4 4 C 1.46496 * 120.00159 * 274.06339 * 3 2 1 5 5 C 1.50699 * 109.47264 * 280.93181 * 4 3 2 6 6 H 1.08007 * 120.00114 * 3.25900 * 5 4 3 7 7 C 1.37875 * 120.00115 * 183.25840 * 5 4 3 8 8 N 1.31519 * 120.00117 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00102 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46968 * 60.00086 * 9 7 5 11 11 H 1.48500 * 109.47066 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47151 * 300.00179 * 9 7 5 13 13 S 1.65600 * 119.99512 * 94.06678 * 3 2 1 14 14 O 1.42097 * 106.40379 * 336.46793 * 13 3 2 15 15 O 1.42105 * 106.39955 * 203.54817 * 13 3 2 16 16 N 1.65594 * 107.21824 * 90.00912 * 13 3 2 17 17 C 1.46503 * 120.00286 * 65.59722 * 16 13 3 18 18 C 1.50694 * 109.47350 * 164.32613 * 17 16 13 19 19 N 1.31047 * 126.46271 * 90.25261 * 18 17 16 20 20 C 1.35018 * 105.59088 * 180.12027 * 19 18 17 21 21 N 1.38850 * 126.38571 * 179.90185 * 20 19 18 22 22 C 1.46492 * 120.00068 * 179.71490 * 21 20 19 23 23 C 1.46506 * 119.99884 * 359.71895 * 21 20 19 24 24 N 1.30631 * 107.22676 * 359.64273 * 20 19 18 25 25 O 1.21289 * 110.12607 * 0.22355 * 24 20 19 26 26 H 1.09002 * 109.47159 * 185.04991 * 1 2 3 27 27 H 1.09006 * 109.46974 * 305.04712 * 1 2 3 28 28 H 1.09003 * 109.47355 * 65.04694 * 1 2 3 29 29 H 1.09007 * 109.46929 * 240.00724 * 2 1 3 30 30 H 1.08990 * 109.47221 * 120.00291 * 2 1 3 31 31 H 1.09002 * 109.47009 * 40.93147 * 4 3 2 32 32 H 1.09004 * 109.46901 * 160.93064 * 4 3 2 33 33 H 0.96999 * 120.00147 * 179.97438 * 8 7 5 34 34 H 0.97002 * 120.00520 * 245.59750 * 16 13 3 35 35 H 1.09005 * 109.46839 * 44.32728 * 17 16 13 36 36 H 1.09003 * 109.47255 * 284.33014 * 17 16 13 37 37 H 1.09007 * 109.47600 * 270.00087 * 22 21 20 38 38 H 1.09002 * 109.47266 * 150.00252 * 22 21 20 39 39 H 1.08999 * 109.47246 * 30.00034 * 22 21 20 40 40 H 1.09003 * 109.46689 * 179.97438 * 23 21 20 41 41 H 1.08993 * 109.46875 * 299.99506 * 23 21 20 42 42 H 1.09006 * 109.47178 * 59.99773 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1777 2.1019 -1.2655 5 6 3.4575 1.6684 -1.9327 6 1 4.0625 0.8922 -1.4877 7 6 3.8562 2.2626 -3.1112 8 7 3.1198 3.2082 -3.6529 9 14 5.4430 1.7258 -3.9379 10 1 5.3620 0.2815 -4.2737 11 1 5.6439 2.5122 -5.1814 12 1 6.5840 1.9563 -3.0159 13 16 2.3901 2.1280 1.4306 14 8 1.6494 1.4546 2.4391 15 8 2.2870 3.5251 1.1926 16 7 3.9878 1.8233 1.7418 17 6 5.0228 2.3683 0.8597 18 6 6.3618 2.2871 1.5463 19 7 7.2090 1.2891 1.4853 20 6 8.2579 1.6563 2.2521 21 7 9.4050 0.9109 2.4902 22 6 10.4648 1.4506 3.3454 23 6 9.5553 -0.4153 1.8861 24 7 7.9949 2.8458 2.7236 25 8 6.9116 3.2213 2.3281 26 1 -0.3633 -1.0237 0.0905 27 1 -0.3633 0.5902 0.8414 28 1 -0.3634 0.4336 -0.9317 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 1.3340 1.8797 -1.9189 32 1 2.2143 3.1738 -1.0711 33 1 3.4004 3.6265 -4.4818 34 1 4.2385 1.2839 2.5080 35 1 4.7942 3.4094 0.6313 36 1 5.0529 1.7917 -0.0648 37 1 11.1746 2.0096 2.7355 38 1 10.9815 0.6310 3.8448 39 1 10.0271 2.1130 4.0923 40 1 10.5122 -0.8439 2.1842 41 1 8.7459 -1.0623 2.2242 42 1 9.5199 -0.3262 0.8003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336911430.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:23 Heat of formation + Delta-G solvation = -9.631945 kcal Electronic energy + Delta-G solvation = -27780.714816 eV Core-core repulsion = 23733.058496 eV Total energy + Delta-G solvation = -4047.656320 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.130 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -46.45132 -38.57805 -38.36771 -37.67907 -37.13198 -36.90321 -35.49698 -34.62345 -32.80572 -31.46589 -29.34739 -28.48625 -27.80752 -26.88650 -24.87995 -24.16532 -23.24967 -22.29924 -20.54439 -19.23693 -19.16693 -18.56529 -18.54185 -18.20555 -17.37673 -17.16145 -16.79578 -16.36294 -15.95230 -15.81609 -15.51502 -15.18556 -14.75197 -14.67387 -14.41962 -13.74948 -13.63843 -13.59314 -13.56860 -13.34953 -13.29037 -13.16972 -13.10702 -13.01396 -12.94405 -12.92014 -12.70940 -12.63881 -12.20576 -12.08045 -12.04913 -11.72413 -11.57662 -11.50509 -10.70851 -10.50474 -9.75911 -9.15969 -8.11111 -6.23608 -0.46741 0.10464 1.31227 1.43970 1.48012 1.50344 1.55534 1.69305 2.03451 2.46372 2.58036 2.75396 3.21880 3.42706 3.54245 3.87405 4.02863 4.14183 4.32722 4.38171 4.41521 4.45444 4.50987 4.58971 4.66223 4.66997 4.76190 4.78943 4.81021 4.88201 5.06641 5.23744 5.37399 5.48840 5.59849 5.79781 5.83041 5.85273 5.97082 6.05545 6.17999 6.89425 7.22828 7.46597 8.96488 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010248 B = 0.004679 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2731.631198 B = 5982.864083 C = 7565.332223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.121 3.879 3 N -0.992 5.992 4 C 0.255 3.745 5 C -0.539 4.539 6 H 0.079 0.921 7 C 0.023 3.977 8 N -0.923 5.923 9 Si 0.943 3.057 10 H -0.268 1.268 11 H -0.292 1.292 12 H -0.268 1.268 13 S 2.805 3.195 14 O -0.995 6.995 15 O -1.006 7.006 16 N -1.112 6.112 17 C 0.215 3.785 18 C 0.208 3.792 19 N -0.503 5.503 20 C 0.414 3.586 21 N -0.591 5.591 22 C 0.103 3.897 23 C 0.107 3.893 24 N -0.452 5.452 25 O 0.057 5.943 26 H 0.088 0.912 27 H 0.045 0.955 28 H 0.049 0.951 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.020 0.980 32 H 0.030 0.970 33 H 0.265 0.735 34 H 0.424 0.576 35 H 0.114 0.886 36 H 0.128 0.872 37 H 0.057 0.943 38 H 0.110 0.890 39 H 0.059 0.941 40 H 0.117 0.883 41 H 0.055 0.945 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.294 -8.682 11.019 17.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.005 4.005 3 N -0.833 5.833 4 C 0.132 3.868 5 C -0.578 4.578 6 H 0.097 0.903 7 C -0.177 4.177 8 N -0.562 5.562 9 Si 0.769 3.231 10 H -0.193 1.193 11 H -0.218 1.218 12 H -0.193 1.193 13 S 2.812 3.188 14 O -0.979 6.979 15 O -0.989 6.989 16 N -0.874 5.874 17 C 0.087 3.913 18 C -0.015 4.015 19 N -0.245 5.245 20 C 0.053 3.947 21 N -0.320 5.320 22 C -0.039 4.039 23 C -0.035 4.035 24 N -0.183 5.183 25 O 0.015 5.985 26 H 0.107 0.893 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.103 0.897 30 H 0.104 0.896 31 H 0.038 0.962 32 H 0.048 0.952 33 H 0.074 0.926 34 H 0.259 0.741 35 H 0.132 0.868 36 H 0.146 0.854 37 H 0.076 0.924 38 H 0.128 0.872 39 H 0.078 0.922 40 H 0.135 0.865 41 H 0.074 0.926 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 10.373 -7.918 11.639 17.486 hybrid contribution 0.828 -0.206 -0.839 1.197 sum 11.201 -8.125 10.800 17.553 Atomic orbital electron populations 1.22195 0.95988 1.03098 1.01426 1.21272 0.94523 0.81144 1.03513 1.57632 1.78914 1.24328 1.22460 1.18836 0.96478 0.91486 0.80012 1.21789 1.07464 1.21020 1.07562 0.90317 1.25618 0.99570 0.94786 0.97761 1.70040 1.39755 1.26174 1.20213 0.85834 0.80691 0.78543 0.78013 1.19343 1.21825 1.19312 1.01127 0.72454 0.72856 0.72340 1.93558 1.69501 1.76325 1.58510 1.93558 1.86208 1.33164 1.85992 1.55759 1.23852 1.68356 1.39473 1.19859 0.76357 1.03530 0.91512 1.28440 0.97835 0.83521 0.91715 1.71879 1.02505 1.27272 1.22825 1.22433 0.90902 0.88587 0.92777 1.45573 1.13869 1.18036 1.54494 1.21871 0.88229 1.00714 0.93087 1.21797 1.03866 0.80101 0.97720 1.74768 1.00872 1.14917 1.27744 1.85268 1.23266 1.40835 1.49158 0.89308 0.93539 0.93146 0.89738 0.89621 0.96195 0.95236 0.92638 0.74100 0.86759 0.85425 0.92416 0.87182 0.92248 0.86489 0.92594 0.93262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.80 10.24 71.98 0.74 -4.06 16 2 C 0.12 3.73 6.01 86.38 0.52 4.25 16 3 N -0.99 -37.00 2.84 -519.84 -1.48 -38.48 16 4 C 0.26 11.72 5.48 85.63 0.47 12.19 16 5 C -0.54 -25.33 7.94 25.60 0.20 -25.12 16 6 H 0.08 3.44 6.74 -2.91 -0.02 3.42 16 7 C 0.02 1.16 5.46 84.65 0.46 1.62 16 8 N -0.92 -50.44 13.29 21.45 0.28 -50.16 16 9 Si 0.94 39.92 29.54 68.60 2.03 41.95 16 10 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 11 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 12 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 13 S 2.80 101.45 6.11 -56.49 -0.34 101.10 16 14 O -0.99 -36.70 17.09 -128.00 -2.19 -38.89 16 15 O -1.01 -43.64 16.09 -128.00 -2.06 -45.70 16 16 N -1.11 -33.50 6.04 -190.78 -1.15 -34.66 16 17 C 0.22 6.92 6.78 85.63 0.58 7.50 16 18 C 0.21 6.59 7.90 88.36 0.70 7.29 16 19 N -0.50 -16.00 11.25 -311.44 -3.50 -19.50 16 20 C 0.41 12.36 8.35 260.92 2.18 14.54 16 21 N -0.59 -13.05 3.39 -767.82 -2.60 -15.65 16 22 C 0.10 1.55 10.56 127.77 1.35 2.90 16 23 C 0.11 1.74 10.53 127.77 1.35 3.08 16 24 N -0.45 -14.46 11.55 -66.69 -0.77 -15.23 16 25 O 0.06 1.85 11.29 74.76 0.84 2.69 16 26 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.05 1.40 8.11 -2.38 -0.02 1.38 16 28 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.08 2.60 8.05 -2.38 -0.02 2.58 16 30 H 0.09 2.26 7.64 -2.39 -0.02 2.24 16 31 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.03 1.52 6.83 -2.39 -0.02 1.51 16 33 H 0.26 13.91 8.31 -92.71 -0.77 13.14 16 34 H 0.42 10.73 8.65 -96.74 -0.84 9.89 16 35 H 0.11 3.77 7.72 -2.38 -0.02 3.75 16 36 H 0.13 4.38 5.58 -2.39 -0.01 4.37 16 37 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 38 H 0.11 0.87 7.92 -2.39 -0.02 0.85 16 39 H 0.06 1.06 7.69 -2.39 -0.02 1.04 16 40 H 0.12 0.96 7.79 -2.39 -0.02 0.95 16 41 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 Total: -1.00 -66.48 368.93 -2.18 -68.67 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: 0.22 Total: 19.67 kcal Atomic # 6 Polarization: 15.65 SS G_CDS: 8.54 Total: 24.19 kcal Atomic # 7 Polarization: -164.46 SS G_CDS: -9.22 Total: -173.68 kcal Atomic # 8 Polarization: -78.49 SS G_CDS: -3.40 Total: -81.90 kcal Atomic # 14 Polarization: 39.92 SS G_CDS: 2.03 Total: 41.95 kcal Atomic # 16 Polarization: 101.45 SS G_CDS: -0.34 Total: 101.10 kcal Total: -66.48 -2.18 -68.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336911430.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.036 kcal (2) G-P(sol) polarization free energy of solvation -66.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds