Wall clock time and date at job start Tue Mar 31 2020 18:41:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50699 * 109.46866 * 119.99935 * 2 1 3 5 5 H 1.07999 * 120.00019 * 120.00027 * 4 2 1 6 6 C 1.37879 * 119.99908 * 300.00133 * 4 2 1 7 7 N 1.31516 * 119.99546 * 180.02562 * 6 4 2 8 8 Si 1.86797 * 120.00061 * 359.97438 * 6 4 2 9 9 H 1.48496 * 109.47023 * 90.00536 * 8 6 4 10 10 H 1.48503 * 109.47041 * 210.00292 * 8 6 4 11 11 H 1.48500 * 109.47388 * 329.99951 * 8 6 4 12 12 N 1.46496 * 109.46995 * 239.99855 * 2 1 3 13 13 C 1.46500 * 119.99935 * 299.99945 * 12 2 1 14 14 S 1.65603 * 120.00062 * 120.00453 * 12 2 1 15 15 O 1.42096 * 106.40136 * 203.53682 * 14 12 2 16 16 O 1.42104 * 106.39896 * 336.45754 * 14 12 2 17 17 N 1.65599 * 107.21785 * 89.99674 * 14 12 2 18 18 C 1.46496 * 120.00176 * 65.00401 * 17 14 12 19 19 C 1.50694 * 109.47433 * 164.99923 * 18 17 14 20 20 N 1.31041 * 126.46608 * 89.99675 * 19 18 17 21 21 C 1.35015 * 105.59439 * 179.97438 * 20 19 18 22 22 N 1.38849 * 126.38796 * 179.97438 * 21 20 19 23 23 C 1.46497 * 119.99967 * 0.02562 * 22 21 20 24 24 C 1.46500 * 120.00148 * 179.97438 * 22 21 20 25 25 N 1.30633 * 107.22816 * 0.02562 * 21 20 19 26 26 O 1.21298 * 110.12318 * 359.73101 * 25 21 20 27 27 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 28 28 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 30 30 H 0.97005 * 119.99945 * 180.02562 * 7 6 4 31 31 H 1.08998 * 109.46877 * 90.00284 * 13 12 2 32 32 H 1.09004 * 109.46845 * 210.00304 * 13 12 2 33 33 H 1.08994 * 109.47249 * 330.00535 * 13 12 2 34 34 H 0.97005 * 119.99539 * 244.99868 * 17 14 12 35 35 H 1.08999 * 109.47158 * 284.99941 * 18 17 14 36 36 H 1.09004 * 109.47299 * 44.99726 * 18 17 14 37 37 H 1.08995 * 109.47251 * 0.02562 * 23 22 21 38 38 H 1.09005 * 109.46757 * 119.99978 * 23 22 21 39 39 H 1.08997 * 109.47321 * 239.99871 * 23 22 21 40 40 H 1.09002 * 109.46838 * 89.99860 * 24 22 21 41 41 H 1.09001 * 109.47535 * 209.99937 * 24 22 21 42 42 H 1.09003 * 109.47303 * 330.00309 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 2.1380 -0.8590 3.5565 8 14 0.6258 1.2799 2.6541 9 1 -0.8020 0.8746 2.6993 10 1 0.9772 1.9954 3.9070 11 1 0.8492 2.1774 1.4923 12 7 2.0184 -0.6906 -1.1961 13 6 1.6644 -2.0932 -1.4279 14 16 2.9705 0.1141 -2.2862 15 8 2.8229 -0.5647 -3.5258 16 8 2.6905 1.4972 -2.1192 17 7 4.5438 -0.1043 -1.8179 18 6 5.1358 -1.4442 -1.8414 19 6 6.6349 -1.3330 -1.7349 20 7 7.3387 -1.3252 -0.6296 21 6 8.6261 -1.2101 -1.0199 22 7 9.7373 -1.1591 -0.1890 23 6 9.5692 -1.2328 1.2644 24 6 11.0781 -1.0326 -0.7658 25 7 8.6312 -1.1545 -2.3251 26 8 7.4976 -1.2288 -2.7504 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.9033 -0.5279 4.4376 31 1 0.7376 -2.1444 -1.9992 32 1 2.4629 -2.5819 -1.9862 33 1 1.5294 -2.5968 -0.4707 34 1 5.0734 0.6549 -1.5281 35 1 4.7540 -2.0248 -1.0017 36 1 4.8737 -1.9409 -2.7756 37 1 8.5098 -1.3250 1.5034 38 1 10.1048 -2.1009 1.6485 39 1 9.9680 -0.3278 1.7227 40 1 11.3321 0.0225 -0.8668 41 1 11.8021 -1.5197 -0.1126 42 1 11.0976 -1.5066 -1.7472 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337797135.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:50 Heat of formation + Delta-G solvation = 30.062665 kcal Electronic energy + Delta-G solvation = -27619.199669 eV Core-core repulsion = 23573.264637 eV Total energy + Delta-G solvation = -4045.935033 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.130 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -45.37146 -37.66178 -36.97795 -36.50105 -36.02080 -35.49627 -34.44048 -32.56568 -31.72423 -30.08687 -28.58392 -26.82827 -25.97022 -25.78453 -25.08237 -23.10435 -21.35795 -20.99717 -19.19170 -18.14787 -18.02309 -17.42703 -17.10452 -16.53634 -16.23811 -16.10691 -15.52060 -15.18442 -15.00496 -14.61407 -14.28938 -13.74516 -13.50811 -13.30909 -12.90094 -12.80599 -12.75910 -12.41454 -12.32461 -12.19226 -12.13055 -12.05175 -11.99430 -11.82641 -11.74910 -11.59763 -11.26081 -11.01412 -10.92592 -10.61528 -10.49885 -10.17336 -9.73412 -9.54912 -9.42942 -8.68667 -8.24354 -8.20064 -6.19548 -4.21062 0.80446 1.26926 2.33019 2.41235 2.77664 3.21125 3.27098 3.34515 3.36443 3.78187 3.89835 4.30777 4.46747 4.71806 4.77926 4.93550 5.07942 5.12335 5.18263 5.24821 5.35001 5.36731 5.42391 5.45518 5.63805 5.69095 5.92210 6.01041 6.11532 6.21860 6.35385 6.49277 6.60079 6.63853 6.79802 6.91121 6.92875 7.23809 7.30537 7.57833 8.31803 8.37994 8.82349 9.41214 10.92522 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012442 B = 0.004021 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2249.942882 B = 6961.084246 C = 8509.801701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.238 3.762 3 H 0.057 0.943 4 C -0.529 4.529 5 H 0.084 0.916 6 C 0.077 3.923 7 N -0.891 5.891 8 Si 0.876 3.124 9 H -0.276 1.276 10 H -0.295 1.295 11 H -0.261 1.261 12 N -0.982 5.982 13 C 0.099 3.901 14 S 2.787 3.213 15 O -0.986 6.986 16 O -0.974 6.974 17 N -1.123 6.123 18 C 0.219 3.781 19 C 0.199 3.801 20 N -0.484 5.484 21 C 0.423 3.577 22 N -0.589 5.589 23 C 0.101 3.899 24 C 0.107 3.893 25 N -0.436 5.436 26 O 0.066 5.934 27 H 0.034 0.966 28 H 0.059 0.941 29 H 0.049 0.951 30 H 0.266 0.734 31 H 0.047 0.953 32 H 0.054 0.946 33 H 0.087 0.913 34 H 0.419 0.581 35 H 0.118 0.882 36 H 0.113 0.887 37 H 0.091 0.909 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.052 0.948 41 H 0.075 0.925 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.285 -2.853 -7.960 14.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.134 3.866 3 H 0.075 0.925 4 C -0.567 4.567 5 H 0.102 0.898 6 C -0.126 4.126 7 N -0.529 5.529 8 Si 0.706 3.294 9 H -0.203 1.203 10 H -0.222 1.222 11 H -0.186 1.186 12 N -0.824 5.824 13 C -0.047 4.047 14 S 2.795 3.205 15 O -0.970 6.970 16 O -0.959 6.959 17 N -0.883 5.883 18 C 0.090 3.910 19 C -0.025 4.025 20 N -0.225 5.225 21 C 0.063 3.937 22 N -0.317 5.317 23 C -0.041 4.041 24 C -0.036 4.036 25 N -0.164 5.164 26 O 0.021 5.979 27 H 0.053 0.947 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.106 0.894 34 H 0.253 0.747 35 H 0.136 0.864 36 H 0.131 0.869 37 H 0.109 0.891 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.093 0.907 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 11.724 -2.477 -8.592 14.745 hybrid contribution -0.220 0.886 0.945 1.314 sum 11.504 -1.591 -7.647 13.905 Atomic orbital electron populations 1.22414 0.98685 1.01433 0.99223 1.19115 0.91070 0.93416 0.83022 0.92505 1.21183 1.32842 1.14486 0.88234 0.89766 1.24875 0.95504 0.96470 0.95773 1.69872 1.44944 1.40054 0.97984 0.87036 0.80806 0.84008 0.77573 1.20300 1.22219 1.18626 1.57474 1.64175 1.21806 1.38985 1.21339 0.99394 0.81387 1.02554 1.01784 0.72176 0.73237 0.73290 1.93575 1.85651 1.76260 1.41479 1.93611 1.83203 1.32211 1.86831 1.56134 1.32692 1.13812 1.85685 1.19620 0.79356 0.86103 1.05872 1.28289 0.97256 0.95538 0.81378 1.71913 1.00299 1.23177 1.27123 1.22057 0.87476 0.97640 0.86519 1.45098 1.01357 1.80730 1.04560 1.21733 1.04506 1.01103 0.76767 1.21613 0.81077 1.01517 0.99419 1.74803 0.99408 1.31645 1.10522 1.85285 1.10656 1.66734 1.35190 0.94665 0.92186 0.93290 0.92451 0.93391 0.92774 0.89418 0.74744 0.86382 0.86875 0.89070 0.92239 0.92243 0.92994 0.90684 0.91068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.24 8.67 37.16 0.32 -2.92 16 2 C 0.24 5.20 2.21 -69.08 -0.15 5.04 16 3 H 0.06 1.33 5.97 -51.93 -0.31 1.02 16 4 C -0.53 -13.18 8.57 -34.44 -0.30 -13.47 16 5 H 0.08 2.21 7.58 -52.49 -0.40 1.81 16 6 C 0.08 2.06 5.45 -17.82 -0.10 1.96 16 7 N -0.89 -25.31 13.96 55.43 0.77 -24.53 16 8 Si 0.88 20.70 24.37 -169.99 -4.14 16.55 16 9 H -0.28 -6.32 6.87 56.52 0.39 -5.93 16 10 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 11 H -0.26 -6.05 6.53 56.52 0.37 -5.68 16 12 N -0.98 -17.83 3.12 -115.85 -0.36 -18.19 16 13 C 0.10 1.51 9.28 59.85 0.56 2.06 16 14 S 2.79 47.84 6.09 -107.50 -0.66 47.19 16 15 O -0.99 -17.40 16.68 -57.17 -0.95 -18.35 16 16 O -0.97 -19.83 16.70 -57.17 -0.95 -20.79 16 17 N -1.12 -16.17 6.05 -11.66 -0.07 -16.24 16 18 C 0.22 2.72 6.87 -5.20 -0.04 2.68 16 19 C 0.20 2.74 7.90 -12.99 -0.10 2.63 16 20 N -0.48 -7.39 10.66 -12.67 -0.14 -7.53 16 21 C 0.42 6.17 8.35 -321.18 -2.68 3.49 16 22 N -0.59 -6.97 3.39 -193.16 -0.65 -7.62 16 23 C 0.10 1.00 10.77 59.85 0.64 1.65 16 24 C 0.11 0.92 10.63 59.85 0.64 1.55 16 25 N -0.44 -6.47 11.56 28.63 0.33 -6.14 16 26 O 0.07 0.94 11.30 18.07 0.20 1.15 16 27 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.06 1.14 7.67 -51.93 -0.40 0.74 16 29 H 0.05 1.05 3.27 -51.93 -0.17 0.88 16 30 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.66 7.79 -51.93 -0.40 0.26 16 33 H 0.09 1.41 7.02 -51.93 -0.36 1.05 16 34 H 0.42 5.77 8.65 -34.47 -0.30 5.47 16 35 H 0.12 1.43 8.14 -51.93 -0.42 1.01 16 36 H 0.11 1.13 7.75 -51.93 -0.40 0.73 16 37 H 0.09 1.09 7.20 -51.93 -0.37 0.71 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.45 8.07 -51.93 -0.42 0.03 16 42 H 0.07 0.65 7.69 -51.93 -0.40 0.25 16 LS Contribution 358.89 15.07 5.41 5.41 Total: -1.00 -33.23 358.89 -8.07 -41.30 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -5.65 Total: 3.12 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: -1.21 Total: 4.68 kcal Atomic # 7 Polarization: -80.14 SS G_CDS: -0.12 Total: -80.26 kcal Atomic # 8 Polarization: -36.29 SS G_CDS: -1.70 Total: -37.99 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.14 Total: 16.55 kcal Atomic # 16 Polarization: 47.84 SS G_CDS: -0.66 Total: 47.19 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.23 -8.07 -41.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337797135.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.362 kcal (2) G-P(sol) polarization free energy of solvation -33.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds