Wall clock time and date at job start Tue Mar 31 2020 18:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50699 * 109.46866 * 119.99935 * 2 1 3 5 5 H 1.07999 * 120.00019 * 120.00027 * 4 2 1 6 6 C 1.37879 * 119.99908 * 300.00133 * 4 2 1 7 7 N 1.31516 * 119.99546 * 180.02562 * 6 4 2 8 8 Si 1.86797 * 120.00061 * 359.97438 * 6 4 2 9 9 H 1.48496 * 109.47023 * 90.00536 * 8 6 4 10 10 H 1.48503 * 109.47041 * 210.00292 * 8 6 4 11 11 H 1.48500 * 109.47388 * 329.99951 * 8 6 4 12 12 N 1.46496 * 109.46995 * 239.99855 * 2 1 3 13 13 C 1.46500 * 119.99935 * 299.99945 * 12 2 1 14 14 S 1.65603 * 120.00062 * 120.00453 * 12 2 1 15 15 O 1.42096 * 106.40136 * 203.53682 * 14 12 2 16 16 O 1.42104 * 106.39896 * 336.45754 * 14 12 2 17 17 N 1.65599 * 107.21785 * 89.99674 * 14 12 2 18 18 C 1.46496 * 120.00176 * 65.00401 * 17 14 12 19 19 C 1.50694 * 109.47433 * 164.99923 * 18 17 14 20 20 N 1.31041 * 126.46608 * 89.99675 * 19 18 17 21 21 C 1.35015 * 105.59439 * 179.97438 * 20 19 18 22 22 N 1.38849 * 126.38796 * 179.97438 * 21 20 19 23 23 C 1.46497 * 119.99967 * 0.02562 * 22 21 20 24 24 C 1.46500 * 120.00148 * 179.97438 * 22 21 20 25 25 N 1.30633 * 107.22816 * 0.02562 * 21 20 19 26 26 O 1.21298 * 110.12318 * 359.73101 * 25 21 20 27 27 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 28 28 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 30 30 H 0.97005 * 119.99945 * 180.02562 * 7 6 4 31 31 H 1.08998 * 109.46877 * 90.00284 * 13 12 2 32 32 H 1.09004 * 109.46845 * 210.00304 * 13 12 2 33 33 H 1.08994 * 109.47249 * 330.00535 * 13 12 2 34 34 H 0.97005 * 119.99539 * 244.99868 * 17 14 12 35 35 H 1.08999 * 109.47158 * 284.99941 * 18 17 14 36 36 H 1.09004 * 109.47299 * 44.99726 * 18 17 14 37 37 H 1.08995 * 109.47251 * 0.02562 * 23 22 21 38 38 H 1.09005 * 109.46757 * 119.99978 * 23 22 21 39 39 H 1.08997 * 109.47321 * 239.99871 * 23 22 21 40 40 H 1.09002 * 109.46838 * 89.99860 * 24 22 21 41 41 H 1.09001 * 109.47535 * 209.99937 * 24 22 21 42 42 H 1.09003 * 109.47303 * 330.00309 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 2.1380 -0.8590 3.5565 8 14 0.6258 1.2799 2.6541 9 1 -0.8020 0.8746 2.6993 10 1 0.9772 1.9954 3.9070 11 1 0.8492 2.1774 1.4923 12 7 2.0184 -0.6906 -1.1961 13 6 1.6644 -2.0932 -1.4279 14 16 2.9705 0.1141 -2.2862 15 8 2.8229 -0.5647 -3.5258 16 8 2.6905 1.4972 -2.1192 17 7 4.5438 -0.1043 -1.8179 18 6 5.1358 -1.4442 -1.8414 19 6 6.6349 -1.3330 -1.7349 20 7 7.3387 -1.3252 -0.6296 21 6 8.6261 -1.2101 -1.0199 22 7 9.7373 -1.1591 -0.1890 23 6 9.5692 -1.2328 1.2644 24 6 11.0781 -1.0326 -0.7658 25 7 8.6312 -1.1545 -2.3251 26 8 7.4976 -1.2288 -2.7504 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.9033 -0.5279 4.4376 31 1 0.7376 -2.1444 -1.9992 32 1 2.4629 -2.5819 -1.9862 33 1 1.5294 -2.5968 -0.4707 34 1 5.0734 0.6549 -1.5281 35 1 4.7540 -2.0248 -1.0017 36 1 4.8737 -1.9409 -2.7756 37 1 8.5098 -1.3250 1.5034 38 1 10.1048 -2.1009 1.6485 39 1 9.9680 -0.3278 1.7227 40 1 11.3321 0.0225 -0.8668 41 1 11.8021 -1.5197 -0.1126 42 1 11.0976 -1.5066 -1.7472 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337797135.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:49 Heat of formation + Delta-G solvation = 3.752777 kcal Electronic energy + Delta-G solvation = -27620.340552 eV Core-core repulsion = 23573.264637 eV Total energy + Delta-G solvation = -4047.075915 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.130 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -46.45269 -38.58690 -38.42702 -38.05297 -37.16151 -36.94788 -35.49854 -34.46239 -32.81134 -31.75117 -29.37700 -27.88806 -27.19704 -26.89667 -26.88228 -24.15217 -22.70542 -22.31897 -20.52037 -19.26051 -19.20086 -18.94508 -18.39003 -18.28354 -17.47388 -17.17272 -17.01906 -16.32230 -15.98510 -15.79676 -15.40241 -15.26453 -14.87570 -14.64949 -14.41510 -14.13194 -13.81933 -13.65353 -13.50129 -13.46944 -13.32382 -13.21895 -13.09597 -13.08730 -13.03119 -12.97559 -12.90387 -12.67200 -12.19717 -12.02350 -11.95133 -11.57336 -11.43858 -11.30325 -10.76617 -10.66957 -9.73209 -9.14517 -8.23903 -6.26356 -0.50509 0.11804 1.31362 1.34048 1.43319 1.44604 1.49526 1.69493 1.97621 2.35844 2.54839 2.75261 3.11707 3.37946 3.52733 3.80436 4.01208 4.11473 4.30849 4.40216 4.43126 4.46609 4.47270 4.56198 4.65961 4.69055 4.72731 4.76497 4.79604 4.92780 4.95014 4.97183 5.21075 5.32942 5.50998 5.59198 5.73389 5.80929 5.95099 5.98063 6.38862 6.79807 7.25376 7.38655 8.91003 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012442 B = 0.004021 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2249.942882 B = 6961.084246 C = 8509.801701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.240 3.760 3 H 0.044 0.956 4 C -0.512 4.512 5 H 0.064 0.936 6 C 0.027 3.973 7 N -0.936 5.936 8 Si 0.921 3.079 9 H -0.263 1.263 10 H -0.302 1.302 11 H -0.254 1.254 12 N -0.987 5.987 13 C 0.090 3.910 14 S 2.807 3.193 15 O -0.987 6.987 16 O -1.006 7.006 17 N -1.120 6.120 18 C 0.215 3.785 19 C 0.205 3.795 20 N -0.509 5.509 21 C 0.413 3.587 22 N -0.592 5.592 23 C 0.100 3.900 24 C 0.103 3.897 25 N -0.450 5.450 26 O 0.064 5.936 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.039 0.961 30 H 0.264 0.736 31 H 0.064 0.936 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.422 0.578 35 H 0.122 0.878 36 H 0.143 0.857 37 H 0.066 0.934 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.057 0.943 41 H 0.105 0.895 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.453 -2.985 -9.051 14.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.134 3.866 3 H 0.061 0.939 4 C -0.552 4.552 5 H 0.082 0.918 6 C -0.172 4.172 7 N -0.576 5.576 8 Si 0.749 3.251 9 H -0.189 1.189 10 H -0.230 1.230 11 H -0.179 1.179 12 N -0.829 5.829 13 C -0.055 4.055 14 S 2.815 3.185 15 O -0.970 6.970 16 O -0.990 6.990 17 N -0.882 5.882 18 C 0.088 3.912 19 C -0.018 4.018 20 N -0.251 5.251 21 C 0.052 3.948 22 N -0.320 5.320 23 C -0.042 4.042 24 C -0.038 4.038 25 N -0.180 5.180 26 O 0.020 5.980 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.103 0.897 33 H 0.093 0.907 34 H 0.256 0.744 35 H 0.140 0.860 36 H 0.161 0.839 37 H 0.084 0.916 38 H 0.100 0.900 39 H 0.094 0.906 40 H 0.076 0.924 41 H 0.123 0.877 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.887 -2.620 -9.709 15.570 hybrid contribution -0.153 0.851 1.238 1.510 sum 11.734 -1.769 -8.471 14.580 Atomic orbital electron populations 1.22375 0.97308 1.02433 0.99755 1.18859 0.92166 0.92565 0.83022 0.93852 1.21411 1.31106 1.13300 0.89349 0.91773 1.25515 0.96991 0.98880 0.95792 1.69990 1.47225 1.41974 0.98444 0.86294 0.80169 0.81375 0.77250 1.18862 1.22997 1.17855 1.57419 1.64751 1.22979 1.37712 1.21577 1.01503 0.79806 1.02603 1.01092 0.72204 0.72225 0.72957 1.93571 1.85946 1.76103 1.41393 1.93567 1.83989 1.34265 1.87219 1.55896 1.31890 1.14877 1.85526 1.19896 0.78502 0.85146 1.07685 1.28433 0.97528 0.94723 0.81095 1.71920 1.01034 1.24178 1.27971 1.22422 0.88058 0.97425 0.86858 1.45550 1.01617 1.79835 1.05048 1.21831 1.03374 1.02991 0.76012 1.21807 0.80117 1.02228 0.99691 1.74774 0.99660 1.32845 1.10741 1.85255 1.10637 1.66879 1.35187 0.92557 0.91052 0.94265 0.92656 0.91785 0.89692 0.90720 0.74390 0.85993 0.83919 0.91552 0.89951 0.90610 0.92405 0.87663 0.91882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.19 8.67 71.98 0.62 -5.57 16 2 C 0.24 10.15 2.21 44.25 0.10 10.25 16 3 H 0.04 1.98 5.97 -2.39 -0.01 1.97 16 4 C -0.51 -25.46 8.57 25.60 0.22 -25.24 16 5 H 0.06 3.39 7.58 -2.91 -0.02 3.37 16 6 C 0.03 1.45 5.45 84.65 0.46 1.91 16 7 N -0.94 -54.06 13.96 21.45 0.30 -53.76 16 8 Si 0.92 42.25 24.37 68.60 1.67 43.92 16 9 H -0.26 -11.38 6.87 99.48 0.68 -10.70 16 10 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 11 H -0.25 -11.25 6.53 99.48 0.65 -10.61 16 12 N -0.99 -34.09 3.12 -520.45 -1.62 -35.72 16 13 C 0.09 2.53 9.28 127.77 1.19 3.71 16 14 S 2.81 91.50 6.09 -56.49 -0.34 91.16 16 15 O -0.99 -32.22 16.68 -128.00 -2.14 -34.36 16 16 O -1.01 -39.81 16.70 -128.00 -2.14 -41.94 16 17 N -1.12 -30.84 6.05 -190.80 -1.15 -31.99 16 18 C 0.22 5.01 6.87 85.63 0.59 5.60 16 19 C 0.21 5.50 7.90 88.36 0.70 6.20 16 20 N -0.51 -15.46 10.66 -311.42 -3.32 -18.78 16 21 C 0.41 11.85 8.35 260.92 2.18 14.03 16 22 N -0.59 -13.37 3.39 -767.81 -2.60 -15.97 16 23 C 0.10 1.86 10.77 127.77 1.38 3.23 16 24 C 0.10 1.60 10.63 127.77 1.36 2.96 16 25 N -0.45 -13.13 11.56 -66.67 -0.77 -13.90 16 26 O 0.06 1.77 11.30 74.72 0.84 2.61 16 27 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.07 2.56 7.67 -2.39 -0.02 2.54 16 29 H 0.04 1.59 3.27 -2.39 -0.01 1.58 16 30 H 0.26 14.56 8.31 -92.70 -0.77 13.79 16 31 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.08 1.83 7.79 -2.38 -0.02 1.81 16 33 H 0.07 2.30 7.02 -2.39 -0.02 2.29 16 34 H 0.42 11.34 8.65 -96.74 -0.84 10.50 16 35 H 0.12 2.79 8.14 -2.39 -0.02 2.77 16 36 H 0.14 2.47 7.75 -2.39 -0.02 2.45 16 37 H 0.07 1.58 7.20 -2.39 -0.02 1.57 16 38 H 0.08 1.14 8.14 -2.38 -0.02 1.13 16 39 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.10 0.98 8.07 -2.39 -0.02 0.96 16 42 H 0.06 1.09 7.69 -2.39 -0.02 1.07 16 Total: -1.00 -70.77 358.89 -2.34 -73.11 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: 0.15 Total: 18.54 kcal Atomic # 6 Polarization: 8.30 SS G_CDS: 8.79 Total: 17.08 kcal Atomic # 7 Polarization: -160.95 SS G_CDS: -9.17 Total: -170.12 kcal Atomic # 8 Polarization: -70.26 SS G_CDS: -3.43 Total: -73.69 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 1.67 Total: 43.92 kcal Atomic # 16 Polarization: 91.50 SS G_CDS: -0.34 Total: 91.16 kcal Total: -70.77 -2.34 -73.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337797135.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.865 kcal (2) G-P(sol) polarization free energy of solvation -70.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds