Wall clock time and date at job start Tue Mar 31 2020 19:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46493 * 109.47243 * 2 1 4 4 C 1.36917 * 119.99773 * 86.48806 * 3 2 1 5 5 H 1.07998 * 119.99921 * 224.09392 * 4 3 2 6 6 C 1.39016 * 119.99842 * 44.09967 * 4 3 2 7 7 N 1.31387 * 120.00324 * 10.63028 * 6 4 3 8 8 Si 1.86803 * 119.99758 * 190.63300 * 6 4 3 9 9 H 1.48496 * 109.46906 * 90.00108 * 8 6 4 10 10 H 1.48498 * 109.46800 * 209.99555 * 8 6 4 11 11 H 1.48492 * 109.47116 * 329.99522 * 8 6 4 12 12 C 1.34775 * 120.00185 * 266.48785 * 3 2 1 13 13 O 1.21628 * 120.00197 * 5.11680 * 12 3 2 14 14 C 1.47367 * 119.99769 * 185.11348 * 12 3 2 15 15 N 1.32061 * 126.45296 * 3.33667 * 14 12 3 16 16 N 1.28466 * 110.20123 * 179.85120 * 15 14 12 17 17 C 1.40121 * 124.92534 * 180.16353 * 16 15 14 18 18 C 1.38837 * 120.07961 * 0.28789 * 17 16 15 19 19 C 1.38119 * 119.95567 * 179.97438 * 18 17 16 20 20 C 1.50697 * 119.94439 * 179.97438 * 19 18 17 21 21 C 1.38305 * 120.11308 * 0.02562 * 19 18 17 22 22 C 1.38248 * 120.16592 * 359.97438 * 21 19 18 23 23 C 1.38335 * 120.03887 * 359.74281 * 22 21 19 24 24 F 1.35102 * 120.05852 * 180.27397 * 23 22 21 25 25 C 1.36115 * 110.14392 * 0.41483 * 16 15 14 26 26 C 1.35747 * 107.08052 * 359.74844 * 25 16 15 27 27 O 1.36078 * 127.26209 * 179.97438 * 26 25 16 28 28 H 1.09004 * 109.47087 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47273 * 299.99567 * 1 2 3 30 30 H 1.09007 * 109.47239 * 59.99600 * 1 2 3 31 31 H 1.09006 * 109.46881 * 239.99977 * 2 1 3 32 32 H 1.09001 * 109.47349 * 120.00859 * 2 1 3 33 33 H 0.97000 * 120.00291 * 180.02562 * 7 6 4 34 34 H 1.08001 * 120.02236 * 359.97438 * 18 17 16 35 35 H 1.08997 * 109.46989 * 89.99555 * 20 19 18 36 36 H 1.08999 * 109.47365 * 210.00536 * 20 19 18 37 37 H 1.08998 * 109.46760 * 330.00247 * 20 19 18 38 38 H 1.08000 * 119.91927 * 179.97438 * 21 19 18 39 39 H 1.07998 * 119.97917 * 180.02562 * 22 21 19 40 40 H 1.08003 * 126.45684 * 179.78135 * 25 16 15 41 41 H 0.96697 * 114.00066 * 270.02362 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1780 2.0507 1.1835 5 1 1.8419 3.0730 1.2752 6 6 2.7730 1.4148 2.2671 7 7 3.3680 0.2550 2.1026 8 14 2.7263 2.2092 3.9572 9 1 1.5089 1.7622 4.6807 10 1 3.9330 1.8101 4.7251 11 1 2.6998 3.6864 3.8092 12 6 2.3104 1.9927 -1.1650 13 8 2.0812 1.4326 -2.2200 14 6 2.9073 3.3400 -1.1604 15 7 3.2644 4.0365 -0.0967 16 7 3.7536 5.1699 -0.4523 17 6 4.2320 6.1489 0.4286 18 6 4.2036 5.9261 1.7987 19 6 4.6763 6.8927 2.6646 20 6 4.6448 6.6508 4.1517 21 6 5.1777 8.0827 2.1693 22 6 5.2083 8.3097 0.8059 23 6 4.7419 7.3438 -0.0676 24 9 4.7768 7.5629 -1.4003 25 6 3.7346 5.2839 -1.8085 26 6 3.2012 4.1355 -2.2978 27 8 2.9920 3.8152 -3.6037 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5140 0.8899 33 1 3.7828 -0.1889 2.8588 34 1 3.8120 4.9975 2.1871 35 1 5.5756 6.1762 4.4624 36 1 4.5302 7.6016 4.6722 37 1 3.8057 5.9994 4.3961 38 1 5.5461 8.8366 2.8492 39 1 5.6008 9.2399 0.4224 40 1 4.0794 6.1287 -2.3864 41 1 2.1248 4.0799 -3.9395 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343272692.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:29 Heat of formation + Delta-G solvation = 7.264088 kcal Electronic energy + Delta-G solvation = -29202.674384 eV Core-core repulsion = 25000.386818 eV Total energy + Delta-G solvation = -4202.287566 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.24837 -42.26358 -39.31535 -38.21363 -36.75879 -34.80969 -33.53660 -32.24618 -31.72352 -30.41883 -29.36046 -28.76400 -26.80840 -25.00871 -24.36433 -22.55465 -22.29997 -20.89039 -20.68177 -19.09919 -18.20808 -17.71757 -17.11460 -16.65317 -16.35389 -16.09206 -15.71035 -15.15842 -14.81814 -14.64595 -14.35317 -14.21940 -14.08489 -13.88673 -13.64999 -13.45069 -13.08660 -12.84377 -12.51781 -12.19673 -12.06541 -11.91655 -11.72605 -11.59714 -11.55311 -11.10562 -11.00165 -10.79587 -10.53969 -10.31991 -9.83163 -9.79964 -9.66475 -9.07593 -8.86849 -8.59863 -8.58946 -7.90660 -7.39009 -6.29982 -4.05925 0.64829 0.94920 2.38595 2.51136 2.61878 3.10747 3.16048 3.19381 3.44168 3.88556 4.07710 4.28834 4.46596 4.52455 4.60063 4.86331 4.91498 4.94536 5.10146 5.17449 5.31078 5.42852 5.50163 5.57664 5.80753 5.84121 5.90599 5.96604 6.09716 6.18169 6.26272 6.31914 6.46282 6.49255 6.57095 6.76837 6.89256 7.11070 7.23715 7.41484 7.60517 8.00382 8.12010 8.42258 8.49927 9.11535 9.51545 9.94359 10.70147 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010427 B = 0.005777 C = 0.003845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2684.741972 B = 4845.604458 C = 7280.830156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.105 3.895 3 N -0.418 5.418 4 C -0.305 4.305 5 H 0.098 0.902 6 C 0.044 3.956 7 N -0.866 5.866 8 Si 0.913 3.087 9 H -0.277 1.277 10 H -0.283 1.283 11 H -0.265 1.265 12 C 0.540 3.460 13 O -0.590 6.590 14 C 0.022 3.978 15 N -0.208 5.208 16 N -0.254 5.254 17 C 0.137 3.863 18 C -0.090 4.090 19 C -0.070 4.070 20 C -0.118 4.118 21 C -0.105 4.105 22 C -0.126 4.126 23 C 0.073 3.927 24 F -0.131 7.131 25 C -0.068 4.068 26 C 0.039 3.961 27 O -0.453 6.453 28 H 0.047 0.953 29 H 0.052 0.948 30 H 0.043 0.957 31 H 0.056 0.944 32 H 0.109 0.891 33 H 0.269 0.731 34 H 0.158 0.842 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.137 0.863 39 H 0.144 0.856 40 H 0.193 0.807 41 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.168 15.554 3.107 16.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.018 4.018 3 N -0.136 5.136 4 C -0.435 4.435 5 H 0.115 0.885 6 C -0.162 4.162 7 N -0.503 5.503 8 Si 0.740 3.260 9 H -0.203 1.203 10 H -0.208 1.208 11 H -0.190 1.190 12 C 0.327 3.673 13 O -0.474 6.474 14 C -0.142 4.142 15 N -0.039 5.039 16 N -0.037 5.037 17 C 0.043 3.957 18 C -0.109 4.109 19 C -0.071 4.071 20 C -0.174 4.174 21 C -0.124 4.124 22 C -0.145 4.145 23 C 0.051 3.949 24 F -0.109 7.109 25 C -0.206 4.206 26 C -0.016 4.016 27 O -0.257 6.257 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.127 0.873 33 H 0.079 0.921 34 H 0.176 0.824 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.155 0.845 39 H 0.162 0.838 40 H 0.210 0.790 41 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 2.770 14.845 3.829 15.579 hybrid contribution -0.335 0.605 -0.360 0.780 sum 2.434 15.450 3.469 16.020 Atomic orbital electron populations 1.22040 0.98128 1.00024 1.01143 1.21489 0.91932 0.84595 1.03762 1.43379 1.53595 1.11996 1.04631 1.19602 1.37658 0.98629 0.87643 0.88507 1.25490 0.94292 0.96132 1.00239 1.69787 1.32999 1.15822 1.31698 0.86158 0.77842 0.79800 0.82174 1.20321 1.20838 1.18967 1.17209 0.81775 0.83528 0.84792 1.90655 1.59210 1.66037 1.31466 1.22895 1.04855 0.97644 0.88773 1.74619 1.12242 0.91916 1.25135 1.42571 1.44669 1.12501 1.03915 1.17587 1.00978 0.87013 0.90104 1.21039 0.99249 1.01287 0.89352 1.19886 0.97304 0.93256 0.96665 1.20854 1.03496 1.02855 0.90237 1.20946 0.99874 0.97312 0.94263 1.20922 1.01718 0.98809 0.93085 1.17254 1.05454 0.94342 0.77829 1.91382 1.94606 1.94659 1.30276 1.23454 1.10317 1.02095 0.84716 1.18271 1.05833 0.92257 0.85215 1.84873 1.38833 1.82387 1.19627 0.93417 0.92868 0.93803 0.92585 0.87311 0.92073 0.82422 0.90465 0.91006 0.90719 0.84489 0.83809 0.79048 0.76495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.25 10.22 37.16 0.38 -2.87 16 2 C 0.11 2.59 5.75 -4.05 -0.02 2.56 16 3 N -0.42 -11.04 2.48 -116.05 -0.29 -11.33 16 4 C -0.31 -7.90 7.54 -14.99 -0.11 -8.01 16 5 H 0.10 2.49 6.56 -52.49 -0.34 2.14 16 6 C 0.04 1.11 5.19 -17.45 -0.09 1.02 16 7 N -0.87 -23.04 11.25 55.50 0.62 -22.42 16 8 Si 0.91 19.12 29.57 -169.99 -5.03 14.09 16 9 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 10 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 11 H -0.27 -5.14 6.97 56.52 0.39 -4.75 16 12 C 0.54 14.47 7.62 -12.55 -0.10 14.38 16 13 O -0.59 -16.63 16.11 3.14 0.05 -16.58 16 14 C 0.02 0.53 6.85 -82.67 -0.57 -0.03 16 15 N -0.21 -4.75 8.20 33.46 0.27 -4.48 16 16 N -0.25 -4.96 3.52 -10.36 -0.04 -4.99 16 17 C 0.14 2.23 6.67 -83.54 -0.56 1.67 16 18 C -0.09 -1.38 9.24 -39.40 -0.36 -1.74 16 19 C -0.07 -0.82 5.88 -104.64 -0.62 -1.44 16 20 C -0.12 -1.13 10.01 36.00 0.36 -0.77 16 21 C -0.11 -0.99 9.69 -39.55 -0.38 -1.37 16 22 C -0.13 -1.27 10.02 -39.54 -0.40 -1.67 16 23 C 0.07 0.98 7.22 -39.24 -0.28 0.70 16 24 F -0.13 -1.75 13.83 2.25 0.03 -1.72 16 25 C -0.07 -1.25 10.55 -16.54 -0.17 -1.42 16 26 C 0.04 0.83 7.35 -39.08 -0.29 0.55 16 27 O -0.45 -8.79 13.20 -22.10 -0.29 -9.08 16 28 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.06 1.41 7.39 -51.93 -0.38 1.03 16 32 H 0.11 2.79 5.55 -51.93 -0.29 2.51 16 33 H 0.27 6.74 8.31 -40.82 -0.34 6.41 16 34 H 0.16 2.80 7.51 -52.49 -0.39 2.40 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 37 H 0.07 0.80 8.08 -51.93 -0.42 0.38 16 38 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 39 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 40 H 0.19 2.95 5.62 -52.48 -0.29 2.66 16 41 H 0.38 5.49 9.07 45.56 0.41 5.90 16 LS Contribution 353.98 15.07 5.33 5.33 Total: -1.00 -32.50 353.98 -6.35 -38.84 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -3.81 Total: 10.77 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: -3.21 Total: 1.56 kcal Atomic # 7 Polarization: -43.80 SS G_CDS: 0.57 Total: -43.22 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: -0.24 Total: -25.65 kcal Atomic # 9 Polarization: -1.75 SS G_CDS: 0.03 Total: -1.72 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.03 Total: 14.09 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.50 -6.35 -38.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343272692.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.108 kcal (2) G-P(sol) polarization free energy of solvation -32.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds