Wall clock time and date at job start Tue Mar 31 2020 19:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46493 * 109.47243 * 2 1 4 4 C 1.36917 * 119.99773 * 86.48806 * 3 2 1 5 5 H 1.07998 * 119.99921 * 224.09392 * 4 3 2 6 6 C 1.39016 * 119.99842 * 44.09967 * 4 3 2 7 7 N 1.31387 * 120.00324 * 10.63028 * 6 4 3 8 8 Si 1.86803 * 119.99758 * 190.63300 * 6 4 3 9 9 H 1.48496 * 109.46906 * 90.00108 * 8 6 4 10 10 H 1.48498 * 109.46800 * 209.99555 * 8 6 4 11 11 H 1.48492 * 109.47116 * 329.99522 * 8 6 4 12 12 C 1.34775 * 120.00185 * 266.48785 * 3 2 1 13 13 O 1.21628 * 120.00197 * 5.11680 * 12 3 2 14 14 C 1.47367 * 119.99769 * 185.11348 * 12 3 2 15 15 N 1.32061 * 126.45296 * 3.33667 * 14 12 3 16 16 N 1.28466 * 110.20123 * 179.85120 * 15 14 12 17 17 C 1.40121 * 124.92534 * 180.16353 * 16 15 14 18 18 C 1.38837 * 120.07961 * 0.28789 * 17 16 15 19 19 C 1.38119 * 119.95567 * 179.97438 * 18 17 16 20 20 C 1.50697 * 119.94439 * 179.97438 * 19 18 17 21 21 C 1.38305 * 120.11308 * 0.02562 * 19 18 17 22 22 C 1.38248 * 120.16592 * 359.97438 * 21 19 18 23 23 C 1.38335 * 120.03887 * 359.74281 * 22 21 19 24 24 F 1.35102 * 120.05852 * 180.27397 * 23 22 21 25 25 C 1.36115 * 110.14392 * 0.41483 * 16 15 14 26 26 C 1.35747 * 107.08052 * 359.74844 * 25 16 15 27 27 O 1.36078 * 127.26209 * 179.97438 * 26 25 16 28 28 H 1.09004 * 109.47087 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47273 * 299.99567 * 1 2 3 30 30 H 1.09007 * 109.47239 * 59.99600 * 1 2 3 31 31 H 1.09006 * 109.46881 * 239.99977 * 2 1 3 32 32 H 1.09001 * 109.47349 * 120.00859 * 2 1 3 33 33 H 0.97000 * 120.00291 * 180.02562 * 7 6 4 34 34 H 1.08001 * 120.02236 * 359.97438 * 18 17 16 35 35 H 1.08997 * 109.46989 * 89.99555 * 20 19 18 36 36 H 1.08999 * 109.47365 * 210.00536 * 20 19 18 37 37 H 1.08998 * 109.46760 * 330.00247 * 20 19 18 38 38 H 1.08000 * 119.91927 * 179.97438 * 21 19 18 39 39 H 1.07998 * 119.97917 * 180.02562 * 22 21 19 40 40 H 1.08003 * 126.45684 * 179.78135 * 25 16 15 41 41 H 0.96697 * 114.00066 * 270.02362 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1780 2.0507 1.1835 5 1 1.8419 3.0730 1.2752 6 6 2.7730 1.4148 2.2671 7 7 3.3680 0.2550 2.1026 8 14 2.7263 2.2092 3.9572 9 1 1.5089 1.7622 4.6807 10 1 3.9330 1.8101 4.7251 11 1 2.6998 3.6864 3.8092 12 6 2.3104 1.9927 -1.1650 13 8 2.0812 1.4326 -2.2200 14 6 2.9073 3.3400 -1.1604 15 7 3.2644 4.0365 -0.0967 16 7 3.7536 5.1699 -0.4523 17 6 4.2320 6.1489 0.4286 18 6 4.2036 5.9261 1.7987 19 6 4.6763 6.8927 2.6646 20 6 4.6448 6.6508 4.1517 21 6 5.1777 8.0827 2.1693 22 6 5.2083 8.3097 0.8059 23 6 4.7419 7.3438 -0.0676 24 9 4.7768 7.5629 -1.4003 25 6 3.7346 5.2839 -1.8085 26 6 3.2012 4.1355 -2.2978 27 8 2.9920 3.8152 -3.6037 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5140 0.8899 33 1 3.7828 -0.1889 2.8588 34 1 3.8120 4.9975 2.1871 35 1 5.5756 6.1762 4.4624 36 1 4.5302 7.6016 4.6722 37 1 3.8057 5.9994 4.3961 38 1 5.5461 8.8366 2.8492 39 1 5.6008 9.2399 0.4224 40 1 4.0794 6.1287 -2.3864 41 1 2.1248 4.0799 -3.9395 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343272692.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:28 Heat of formation + Delta-G solvation = -13.914307 kcal Electronic energy + Delta-G solvation = -29203.592748 eV Core-core repulsion = 25000.386818 eV Total energy + Delta-G solvation = -4203.205930 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -50.27845 -43.82040 -40.49042 -40.02822 -38.27801 -36.82376 -34.79121 -33.70006 -33.18667 -32.06885 -31.02368 -30.16287 -27.71125 -26.96003 -25.90441 -23.93608 -23.63500 -22.53783 -21.93620 -21.01172 -19.72268 -18.83784 -18.74064 -17.96177 -17.72122 -17.60681 -17.14491 -16.68720 -16.51433 -16.23795 -15.61304 -15.45991 -15.43669 -15.28856 -15.09600 -14.77185 -14.52299 -14.39460 -14.13445 -13.59750 -13.49298 -13.10393 -12.93992 -12.91566 -12.81764 -12.72111 -12.63783 -12.41640 -12.19174 -11.94534 -11.75011 -11.32844 -11.07522 -11.04057 -10.59695 -10.14351 -9.84654 -9.46598 -9.18663 -8.25221 -6.09134 -0.46390 0.00147 0.76889 1.04850 1.23742 1.40730 1.44843 1.54951 2.28562 2.41373 2.54343 2.73757 2.86063 3.10633 3.22212 3.51632 3.59943 3.79262 3.96192 4.07596 4.17430 4.19014 4.38558 4.43285 4.61459 4.62850 4.71784 4.76401 4.81308 4.83502 4.93835 5.00941 5.05665 5.14950 5.21708 5.26464 5.39813 5.45353 5.58100 5.64201 5.90128 6.01592 6.47145 6.74647 6.81691 7.13149 7.50566 7.93624 8.75974 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010427 B = 0.005777 C = 0.003845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2684.741972 B = 4845.604458 C = 7280.830156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.102 3.898 3 N -0.429 5.429 4 C -0.316 4.316 5 H 0.093 0.907 6 C 0.003 3.997 7 N -0.900 5.900 8 Si 0.975 3.025 9 H -0.270 1.270 10 H -0.280 1.280 11 H -0.247 1.247 12 C 0.524 3.476 13 O -0.619 6.619 14 C -0.026 4.026 15 N -0.223 5.223 16 N -0.245 5.245 17 C 0.088 3.912 18 C -0.111 4.111 19 C -0.070 4.070 20 C -0.120 4.120 21 C -0.078 4.078 22 C -0.110 4.110 23 C 0.072 3.928 24 F -0.132 7.132 25 C -0.047 4.047 26 C 0.024 3.976 27 O -0.462 6.462 28 H 0.079 0.921 29 H 0.053 0.947 30 H 0.036 0.964 31 H 0.038 0.962 32 H 0.098 0.902 33 H 0.271 0.729 34 H 0.124 0.876 35 H 0.085 0.915 36 H 0.106 0.894 37 H 0.056 0.944 38 H 0.187 0.813 39 H 0.186 0.814 40 H 0.226 0.774 41 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.338 19.788 5.159 20.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.020 4.020 3 N -0.146 5.146 4 C -0.445 4.445 5 H 0.110 0.890 6 C -0.199 4.199 7 N -0.539 5.539 8 Si 0.798 3.202 9 H -0.195 1.195 10 H -0.205 1.205 11 H -0.171 1.171 12 C 0.313 3.687 13 O -0.506 6.506 14 C -0.187 4.187 15 N -0.056 5.056 16 N -0.029 5.029 17 C -0.003 4.003 18 C -0.131 4.131 19 C -0.071 4.071 20 C -0.176 4.176 21 C -0.096 4.096 22 C -0.129 4.129 23 C 0.050 3.950 24 F -0.110 7.110 25 C -0.187 4.187 26 C -0.032 4.032 27 O -0.269 6.269 28 H 0.098 0.902 29 H 0.072 0.928 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.115 0.885 33 H 0.081 0.919 34 H 0.142 0.858 35 H 0.103 0.897 36 H 0.125 0.875 37 H 0.075 0.925 38 H 0.204 0.796 39 H 0.203 0.797 40 H 0.242 0.758 41 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 3.920 19.089 5.897 20.360 hybrid contribution -0.589 -0.520 -0.945 1.229 sum 3.331 18.569 4.952 19.505 Atomic orbital electron populations 1.21899 0.95232 1.02017 1.00690 1.21511 0.94340 0.84005 1.02191 1.43632 1.53602 1.12427 1.04898 1.19696 1.38430 0.98657 0.87748 0.88960 1.26335 0.93324 0.96444 1.03787 1.69910 1.33841 1.17210 1.32889 0.85210 0.77956 0.79972 0.77058 1.19549 1.20494 1.17068 1.17669 0.81671 0.84802 0.84575 1.90586 1.60556 1.67244 1.32207 1.22710 1.07603 0.97594 0.90786 1.74458 1.12790 0.93183 1.25191 1.42873 1.43060 1.11981 1.04938 1.18052 1.04273 0.87770 0.90228 1.20973 1.00972 1.01404 0.89771 1.20210 0.96392 0.93178 0.97293 1.20954 1.03190 1.04502 0.88964 1.21515 0.96642 0.96683 0.94717 1.21454 0.99573 0.99000 0.92852 1.17533 1.05306 0.93906 0.78268 1.91360 1.94593 1.94506 1.30564 1.23836 1.08608 1.01816 0.84401 1.18379 1.06954 0.92718 0.85133 1.84806 1.40429 1.82804 1.18874 0.90182 0.92839 0.94530 0.94343 0.88453 0.91891 0.85810 0.89663 0.87530 0.92475 0.79591 0.79715 0.75823 0.74333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.03 10.22 71.98 0.74 -5.29 16 2 C 0.10 5.31 5.75 86.38 0.50 5.81 16 3 N -0.43 -23.94 2.48 -639.33 -1.59 -25.53 16 4 C -0.32 -17.13 7.54 84.09 0.63 -16.49 16 5 H 0.09 5.00 6.56 -2.91 -0.02 4.98 16 6 C 0.00 0.17 5.19 84.95 0.44 0.61 16 7 N -0.90 -49.76 11.25 21.68 0.24 -49.51 16 8 Si 0.98 39.79 29.57 68.60 2.03 41.81 16 9 H -0.27 -10.67 7.11 99.48 0.71 -9.97 16 10 H -0.28 -11.18 7.11 99.48 0.71 -10.47 16 11 H -0.25 -9.25 6.97 99.48 0.69 -8.55 16 12 C 0.52 29.94 7.62 86.65 0.66 30.60 16 13 O -0.62 -37.12 16.11 -2.10 -0.03 -37.15 16 14 C -0.03 -1.32 6.85 42.41 0.29 -1.03 16 15 N -0.22 -10.67 8.20 -48.07 -0.39 -11.07 16 16 N -0.25 -9.75 3.52 -186.67 -0.66 -10.40 16 17 C 0.09 2.82 6.67 38.16 0.25 3.07 16 18 C -0.11 -3.37 9.24 22.38 0.21 -3.16 16 19 C -0.07 -1.40 5.88 -19.88 -0.12 -1.52 16 20 C -0.12 -1.86 10.01 71.24 0.71 -1.15 16 21 C -0.08 -1.00 9.69 22.29 0.22 -0.79 16 22 C -0.11 -1.63 10.02 22.30 0.22 -1.40 16 23 C 0.07 1.72 7.22 22.49 0.16 1.88 16 24 F -0.13 -3.15 13.83 44.97 0.62 -2.53 16 25 C -0.05 -1.75 10.55 83.45 0.88 -0.87 16 26 C 0.02 1.03 7.35 22.59 0.17 1.20 16 27 O -0.46 -18.49 13.20 -92.41 -1.22 -19.71 16 28 H 0.08 2.87 8.14 -2.38 -0.02 2.85 16 29 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 31 H 0.04 2.07 7.39 -2.38 -0.02 2.05 16 32 H 0.10 5.27 5.55 -2.39 -0.01 5.25 16 33 H 0.27 14.04 8.31 -92.71 -0.77 13.27 16 34 H 0.12 4.56 7.51 -2.91 -0.02 4.54 16 35 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.11 0.92 8.08 -2.39 -0.02 0.90 16 37 H 0.06 1.10 8.08 -2.39 -0.02 1.08 16 38 H 0.19 0.73 8.06 -2.91 -0.02 0.70 16 39 H 0.19 1.31 8.06 -2.91 -0.02 1.29 16 40 H 0.23 6.56 5.62 -2.91 -0.02 6.55 16 41 H 0.40 11.92 9.07 -74.06 -0.67 11.24 16 Total: -1.00 -77.29 353.98 5.38 -71.91 By element: Atomic # 1 Polarization: 30.30 SS G_CDS: 0.41 Total: 30.71 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: 5.96 Total: 11.47 kcal Atomic # 7 Polarization: -94.12 SS G_CDS: -2.39 Total: -96.51 kcal Atomic # 8 Polarization: -55.60 SS G_CDS: -1.25 Total: -56.86 kcal Atomic # 9 Polarization: -3.15 SS G_CDS: 0.62 Total: -2.53 kcal Atomic # 14 Polarization: 39.79 SS G_CDS: 2.03 Total: 41.81 kcal Total: -77.29 5.38 -71.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343272692.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.992 kcal (2) G-P(sol) polarization free energy of solvation -77.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds