Wall clock time and date at job start Tue Mar 31 2020 17:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47105 * 2 1 4 4 C 1.50704 * 109.46743 * 119.99220 * 2 1 3 5 5 O 1.21291 * 119.99558 * 114.51891 * 4 2 1 6 6 N 1.34772 * 120.00522 * 294.24961 * 4 2 1 7 7 C 1.46495 * 120.00228 * 180.27629 * 6 4 2 8 8 C 1.50699 * 109.47326 * 179.97438 * 7 6 4 9 9 O 1.21298 * 119.99927 * 359.97438 * 8 7 6 10 10 N 1.34770 * 120.00397 * 179.97438 * 8 7 6 11 11 C 1.37098 * 120.00285 * 179.97438 * 10 8 7 12 12 H 1.08004 * 119.99894 * 0.02562 * 11 10 8 13 13 C 1.38946 * 120.00207 * 179.97438 * 11 10 8 14 14 N 1.31415 * 119.99834 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00201 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.46918 * 60.00354 * 15 13 11 17 17 H 1.48502 * 109.47402 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47211 * 300.00667 * 15 13 11 19 19 C 1.50696 * 109.47465 * 239.99143 * 2 1 3 20 20 C 1.38349 * 119.91247 * 174.16049 * 19 2 1 21 21 C 1.38549 * 120.28277 * 179.72929 * 20 19 2 22 22 F 1.35098 * 119.95379 * 180.30103 * 21 20 19 23 23 C 1.38204 * 120.09620 * 0.55077 * 21 20 19 24 24 C 1.39579 * 119.81861 * 359.72584 * 23 21 20 25 25 C 1.43199 * 120.13719 * 180.02562 * 24 23 21 26 26 N 5.95768 * 74.64116 * 236.68181 * 2 1 3 27 27 C 1.37931 * 119.91293 * 354.44158 * 19 2 1 28 28 H 1.09000 * 109.47515 * 300.00435 * 1 2 3 29 29 H 1.09006 * 109.46794 * 60.00681 * 1 2 3 30 30 H 1.09006 * 109.47395 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47026 * 179.97438 * 3 2 1 32 32 H 1.09006 * 109.46738 * 299.99353 * 3 2 1 33 33 H 1.09000 * 109.47289 * 59.99427 * 3 2 1 34 34 H 0.97000 * 119.99646 * 0.26922 * 6 4 2 35 35 H 1.09003 * 109.47201 * 299.99647 * 7 6 4 36 36 H 1.09000 * 109.47407 * 59.99597 * 7 6 4 37 37 H 0.97001 * 119.99783 * 0.02562 * 10 8 7 38 38 H 0.97002 * 119.99843 * 179.97438 * 14 13 11 39 39 H 1.08003 * 119.85404 * 0.02562 * 20 19 2 40 40 H 1.08005 * 120.08623 * 179.74894 * 23 21 20 41 41 H 1.08009 * 120.04663 * 359.97103 * 27 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7103 1.2306 5 8 2.6453 -1.7512 1.1222 6 7 1.8049 -0.1861 2.4513 7 6 2.2984 -0.8735 3.6471 8 6 1.9151 -0.0860 4.8734 9 8 1.2914 0.9482 4.7596 10 7 2.2652 -0.5305 6.0966 11 6 1.9170 0.1862 7.2121 12 1 1.3616 1.1070 7.1108 13 6 2.2775 -0.2724 8.4732 14 7 2.9527 -1.3930 8.5965 15 14 1.8023 0.7038 9.9933 16 1 0.3237 0.8217 10.0636 17 1 2.3020 0.0068 11.2056 18 1 2.4039 2.0595 9.9190 19 6 2.0324 -0.7106 -1.2303 20 6 3.3871 -0.7313 -1.5102 21 6 3.8579 -1.3871 -2.6362 22 9 5.1828 -1.4083 -2.8998 23 6 2.9738 -2.0151 -3.4928 24 6 1.6056 -1.9919 -3.2175 25 6 0.6835 -2.6409 -4.1002 26 7 -0.0480 -3.1556 -4.8006 27 6 1.1398 -1.3336 -2.0775 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6766 1.9564 0.8899 34 1 1.3146 0.6463 2.5379 35 1 1.8578 -1.8690 3.7019 36 1 3.3838 -0.9590 3.5952 37 1 2.7643 -1.3573 6.1876 38 1 3.2047 -1.7130 9.4769 39 1 4.0810 -0.2382 -0.8454 40 1 3.3407 -2.5228 -4.3727 41 1 0.0822 -1.3126 -1.8592 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343539563.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:04:07 Heat of formation + Delta-G solvation = -69.814200 kcal Electronic energy + Delta-G solvation = -27270.402649 eV Core-core repulsion = 23064.772717 eV Total energy + Delta-G solvation = -4205.629931 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.21581 -40.92605 -39.25849 -38.20895 -36.87557 -35.40324 -34.54832 -33.74834 -31.62472 -31.43821 -30.36116 -27.83989 -27.70206 -24.83639 -24.50767 -24.03462 -22.08119 -20.17672 -19.75991 -18.79749 -18.07981 -17.21670 -17.01136 -16.62300 -16.32852 -15.98693 -15.91869 -15.44989 -15.33431 -14.66210 -14.48331 -14.27596 -14.14762 -14.13101 -13.94396 -13.61872 -13.51139 -13.16347 -12.80021 -12.61262 -12.52147 -12.41608 -12.27999 -12.19478 -12.06155 -11.95673 -11.67834 -11.38701 -11.28126 -11.14338 -10.54834 -10.36239 -9.76487 -9.67828 -9.34873 -9.13727 -8.90739 -8.70034 -8.15785 -6.56430 -3.98825 0.25987 0.69144 2.24355 2.43995 2.64801 3.09857 3.11632 3.18630 3.22422 3.32484 3.44729 3.67716 3.80948 4.06630 4.09654 4.45544 4.51291 4.56532 4.64624 4.72543 4.77176 4.80700 5.07976 5.11907 5.28650 5.38188 5.43315 5.47364 5.54053 5.57813 5.67538 5.79496 5.81760 5.87691 5.89678 6.00031 6.00844 6.32143 6.55217 7.06178 7.40923 7.66440 7.86003 8.28865 8.39380 8.99120 9.33328 9.80720 10.60186 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.022450 B = 0.002189 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.899415 B =12786.558335 C =13128.293751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.042 4.042 3 C -0.145 4.145 4 C 0.520 3.480 5 O -0.538 6.538 6 N -0.701 5.701 7 C 0.108 3.892 8 C 0.426 3.574 9 O -0.598 6.598 10 N -0.547 5.547 11 C -0.306 4.306 12 H 0.105 0.895 13 C 0.026 3.974 14 N -0.894 5.894 15 Si 0.934 3.066 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.272 1.272 19 C -0.026 4.026 20 C -0.095 4.095 21 C 0.104 3.896 22 F -0.132 7.132 23 C -0.109 4.109 24 C -0.001 4.001 25 C 0.258 3.742 26 N -0.410 5.410 27 C -0.075 4.075 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.411 0.589 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.396 0.604 38 H 0.275 0.725 39 H 0.143 0.857 40 H 0.145 0.855 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.198 2.210 -20.439 20.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.045 4.045 3 C -0.202 4.202 4 C 0.304 3.696 5 O -0.416 6.416 6 N -0.355 5.355 7 C -0.019 4.019 8 C 0.212 3.788 9 O -0.485 6.485 10 N -0.182 5.182 11 C -0.436 4.436 12 H 0.123 0.877 13 C -0.177 4.177 14 N -0.534 5.534 15 Si 0.761 3.239 16 H -0.197 1.197 17 H -0.208 1.208 18 H -0.197 1.197 19 C -0.026 4.026 20 C -0.114 4.114 21 C 0.084 3.916 22 F -0.111 7.111 23 C -0.130 4.130 24 C -0.005 4.005 25 C -0.058 4.058 26 N -0.085 5.085 27 C -0.095 4.095 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.250 0.750 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.230 0.770 38 H 0.085 0.915 39 H 0.160 0.840 40 H 0.162 0.838 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -1.179 1.239 -21.452 21.520 hybrid contribution 0.532 0.349 1.267 1.418 sum -0.647 1.587 -20.185 20.258 Atomic orbital electron populations 1.22028 0.91320 1.03396 1.03950 1.19736 0.97954 0.96412 0.90417 1.21979 1.02064 0.92306 1.03840 1.20153 0.79967 0.85306 0.84144 1.90731 1.40949 1.23239 1.86637 1.45668 1.57312 1.27899 1.04649 1.20978 1.00262 0.96291 0.84402 1.19715 0.86473 0.88099 0.84511 1.90495 1.45952 1.26182 1.85899 1.41795 1.48394 1.23594 1.04398 1.19676 1.33972 1.06757 0.83176 0.87689 1.25337 0.96416 0.96456 0.99472 1.69606 1.37613 1.20558 1.25585 0.85867 0.79069 0.79315 0.79692 1.19748 1.20838 1.19747 1.19021 0.92177 0.96856 0.94583 1.21206 0.96306 0.98373 0.95565 1.17261 0.77877 1.00582 0.95865 1.91547 1.30920 1.94846 1.93739 1.21056 0.91329 1.00238 1.00399 1.15531 0.89682 1.01086 0.94169 1.25484 0.93374 0.93621 0.93312 1.81284 1.09013 1.08880 1.09320 1.21222 1.01080 0.95151 0.92058 0.90590 0.90627 0.91295 0.91503 0.90782 0.90633 0.75006 0.89776 0.89760 0.77023 0.91474 0.83970 0.83750 0.83711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 7.11 37.16 0.26 -0.84 16 2 C -0.04 -0.38 0.72 -156.81 -0.11 -0.50 16 3 C -0.14 -1.08 8.07 37.16 0.30 -0.78 16 4 C 0.52 6.86 6.35 -10.99 -0.07 6.79 16 5 O -0.54 -8.78 15.54 5.55 0.09 -8.70 16 6 N -0.70 -10.12 5.36 -61.47 -0.33 -10.45 16 7 C 0.11 1.83 6.15 -5.20 -0.03 1.79 16 8 C 0.43 9.19 7.85 -10.99 -0.09 9.10 16 9 O -0.60 -14.37 15.24 5.54 0.08 -14.29 16 10 N -0.55 -13.01 5.29 -10.96 -0.06 -13.07 16 11 C -0.31 -8.05 9.68 -14.93 -0.14 -8.19 16 12 H 0.11 2.86 7.16 -52.48 -0.38 2.49 16 13 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 14 N -0.89 -23.28 13.05 55.50 0.72 -22.55 16 15 Si 0.93 19.99 29.55 -169.99 -5.02 14.97 16 16 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 17 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 18 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 19 C -0.03 -0.23 4.23 -104.70 -0.44 -0.67 16 20 C -0.09 -0.89 8.34 -39.43 -0.33 -1.22 16 21 C 0.10 0.93 7.29 -39.48 -0.29 0.65 16 22 F -0.13 -1.31 17.26 2.25 0.04 -1.27 16 23 C -0.11 -0.85 9.73 -39.09 -0.38 -1.23 16 24 C 0.00 -0.01 5.73 -106.95 -0.61 -0.62 16 25 C 0.26 2.42 15.33 -22.47 -0.34 2.08 16 26 N -0.41 -4.76 18.54 41.84 0.78 -3.98 16 27 C -0.07 -0.59 8.69 -39.17 -0.34 -0.93 16 28 H 0.08 0.58 7.97 -51.93 -0.41 0.17 16 29 H 0.07 0.39 7.77 -51.93 -0.40 -0.01 16 30 H 0.07 0.52 7.24 -51.93 -0.38 0.15 16 31 H 0.07 0.51 7.07 -51.93 -0.37 0.14 16 32 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.58 7.27 -51.93 -0.38 0.21 16 34 H 0.41 5.78 6.36 -40.82 -0.26 5.52 16 35 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 37 H 0.40 9.08 7.90 -40.82 -0.32 8.76 16 38 H 0.28 6.80 8.31 -40.82 -0.34 6.46 16 39 H 0.14 1.30 7.22 -52.48 -0.38 0.92 16 40 H 0.14 0.86 8.06 -52.48 -0.42 0.44 16 41 H 0.15 0.91 5.89 -52.48 -0.31 0.60 16 LS Contribution 364.59 15.07 5.49 5.49 Total: -1.00 -31.11 364.59 -5.33 -36.44 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -4.41 Total: 11.40 kcal Atomic # 6 Polarization: 8.72 SS G_CDS: -2.72 Total: 6.00 kcal Atomic # 7 Polarization: -51.17 SS G_CDS: 1.11 Total: -50.06 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: 0.17 Total: -22.99 kcal Atomic # 9 Polarization: -1.31 SS G_CDS: 0.04 Total: -1.27 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.11 -5.33 -36.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343539563.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.375 kcal (2) G-P(sol) polarization free energy of solvation -31.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds