Wall clock time and date at job start Tue Mar 31 2020 17:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47105 * 2 1 4 4 C 1.50704 * 109.46743 * 119.99220 * 2 1 3 5 5 O 1.21291 * 119.99558 * 114.51891 * 4 2 1 6 6 N 1.34772 * 120.00522 * 294.24961 * 4 2 1 7 7 C 1.46495 * 120.00228 * 180.27629 * 6 4 2 8 8 C 1.50699 * 109.47326 * 179.97438 * 7 6 4 9 9 O 1.21298 * 119.99927 * 359.97438 * 8 7 6 10 10 N 1.34770 * 120.00397 * 179.97438 * 8 7 6 11 11 C 1.37098 * 120.00285 * 179.97438 * 10 8 7 12 12 H 1.08004 * 119.99894 * 0.02562 * 11 10 8 13 13 C 1.38946 * 120.00207 * 179.97438 * 11 10 8 14 14 N 1.31415 * 119.99834 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00201 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.46918 * 60.00354 * 15 13 11 17 17 H 1.48502 * 109.47402 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47211 * 300.00667 * 15 13 11 19 19 C 1.50696 * 109.47465 * 239.99143 * 2 1 3 20 20 C 1.38349 * 119.91247 * 174.16049 * 19 2 1 21 21 C 1.38549 * 120.28277 * 179.72929 * 20 19 2 22 22 F 1.35098 * 119.95379 * 180.30103 * 21 20 19 23 23 C 1.38204 * 120.09620 * 0.55077 * 21 20 19 24 24 C 1.39579 * 119.81861 * 359.72584 * 23 21 20 25 25 C 1.43199 * 120.13719 * 180.02562 * 24 23 21 26 26 N 5.95768 * 74.64116 * 236.68181 * 2 1 3 27 27 C 1.37931 * 119.91293 * 354.44158 * 19 2 1 28 28 H 1.09000 * 109.47515 * 300.00435 * 1 2 3 29 29 H 1.09006 * 109.46794 * 60.00681 * 1 2 3 30 30 H 1.09006 * 109.47395 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47026 * 179.97438 * 3 2 1 32 32 H 1.09006 * 109.46738 * 299.99353 * 3 2 1 33 33 H 1.09000 * 109.47289 * 59.99427 * 3 2 1 34 34 H 0.97000 * 119.99646 * 0.26922 * 6 4 2 35 35 H 1.09003 * 109.47201 * 299.99647 * 7 6 4 36 36 H 1.09000 * 109.47407 * 59.99597 * 7 6 4 37 37 H 0.97001 * 119.99783 * 0.02562 * 10 8 7 38 38 H 0.97002 * 119.99843 * 179.97438 * 14 13 11 39 39 H 1.08003 * 119.85404 * 0.02562 * 20 19 2 40 40 H 1.08005 * 120.08623 * 179.74894 * 23 21 20 41 41 H 1.08009 * 120.04663 * 359.97103 * 27 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7103 1.2306 5 8 2.6453 -1.7512 1.1222 6 7 1.8049 -0.1861 2.4513 7 6 2.2984 -0.8735 3.6471 8 6 1.9151 -0.0860 4.8734 9 8 1.2914 0.9482 4.7596 10 7 2.2652 -0.5305 6.0966 11 6 1.9170 0.1862 7.2121 12 1 1.3616 1.1070 7.1108 13 6 2.2775 -0.2724 8.4732 14 7 2.9527 -1.3930 8.5965 15 14 1.8023 0.7038 9.9933 16 1 0.3237 0.8217 10.0636 17 1 2.3020 0.0068 11.2056 18 1 2.4039 2.0595 9.9190 19 6 2.0324 -0.7106 -1.2303 20 6 3.3871 -0.7313 -1.5102 21 6 3.8579 -1.3871 -2.6362 22 9 5.1828 -1.4083 -2.8998 23 6 2.9738 -2.0151 -3.4928 24 6 1.6056 -1.9919 -3.2175 25 6 0.6835 -2.6409 -4.1002 26 7 -0.0480 -3.1556 -4.8006 27 6 1.1398 -1.3336 -2.0775 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6766 1.9564 0.8899 34 1 1.3146 0.6463 2.5379 35 1 1.8578 -1.8690 3.7019 36 1 3.3838 -0.9590 3.5952 37 1 2.7643 -1.3573 6.1876 38 1 3.2047 -1.7130 9.4769 39 1 4.0810 -0.2382 -0.8454 40 1 3.3407 -2.5228 -4.3727 41 1 0.0822 -1.3126 -1.8592 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343539563.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:04:06 Heat of formation + Delta-G solvation = -89.569695 kcal Electronic energy + Delta-G solvation = -27271.259311 eV Core-core repulsion = 23064.772717 eV Total energy + Delta-G solvation = -4206.486594 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -49.93736 -41.80738 -40.43205 -39.67054 -37.70756 -36.25389 -36.17332 -35.22010 -33.35075 -32.31061 -31.08863 -29.16269 -28.40344 -26.51238 -25.23056 -24.86784 -22.97822 -21.37112 -21.08028 -20.15284 -19.63352 -18.13998 -17.71295 -17.53065 -17.24818 -17.01768 -16.91831 -16.65393 -16.63700 -16.32452 -15.79044 -15.45024 -15.14725 -15.05382 -14.90830 -14.72718 -14.34197 -14.05230 -13.95052 -13.62495 -13.52739 -13.38132 -13.24559 -13.17097 -13.03269 -12.87738 -12.79690 -12.76572 -12.45228 -12.13240 -12.05618 -11.93075 -11.54052 -10.80754 -10.53071 -10.16668 -10.06147 -10.04068 -9.80983 -8.49468 -5.99481 -0.42237 0.03038 1.39342 1.44162 1.49955 1.54639 1.60219 1.69156 1.93643 2.08698 2.33027 2.58086 2.69066 3.11466 3.16193 3.18056 3.41907 3.71310 3.84200 3.92126 3.95796 4.00677 4.11590 4.24004 4.39680 4.46111 4.47686 4.73105 4.78205 4.86342 4.87052 4.91517 4.94794 5.07624 5.18598 5.28037 5.32111 5.38545 5.40076 5.64832 5.93509 6.33336 6.47610 6.56006 7.05251 7.18326 7.46839 7.96351 8.67074 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.022450 B = 0.002189 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.899415 B =12786.558335 C =13128.293751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.032 4.032 3 C -0.145 4.145 4 C 0.520 3.480 5 O -0.570 6.570 6 N -0.702 5.702 7 C 0.121 3.879 8 C 0.434 3.566 9 O -0.622 6.622 10 N -0.561 5.561 11 C -0.336 4.336 12 H 0.088 0.912 13 C -0.012 4.012 14 N -0.917 5.917 15 Si 0.996 3.004 16 H -0.270 1.270 17 H -0.274 1.274 18 H -0.269 1.269 19 C -0.036 4.036 20 C -0.100 4.100 21 C 0.091 3.909 22 F -0.140 7.140 23 C -0.097 4.097 24 C -0.003 4.003 25 C 0.282 3.718 26 N -0.449 5.449 27 C -0.064 4.064 28 H 0.072 0.928 29 H 0.104 0.896 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.098 0.902 33 H 0.072 0.928 34 H 0.414 0.586 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.398 0.602 38 H 0.279 0.721 39 H 0.139 0.861 40 H 0.163 0.837 41 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.742 2.742 -21.316 21.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.035 4.035 3 C -0.202 4.202 4 C 0.307 3.693 5 O -0.449 6.449 6 N -0.357 5.357 7 C -0.007 4.007 8 C 0.221 3.779 9 O -0.510 6.510 10 N -0.197 5.197 11 C -0.465 4.465 12 H 0.106 0.894 13 C -0.212 4.212 14 N -0.557 5.557 15 Si 0.819 3.181 16 H -0.195 1.195 17 H -0.199 1.199 18 H -0.194 1.194 19 C -0.037 4.037 20 C -0.119 4.119 21 C 0.072 3.928 22 F -0.118 7.118 23 C -0.118 4.118 24 C -0.006 4.006 25 C -0.033 4.033 26 N -0.125 5.125 27 C -0.085 4.085 28 H 0.091 0.909 29 H 0.123 0.877 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.117 0.883 33 H 0.091 0.909 34 H 0.253 0.747 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.232 0.768 38 H 0.089 0.911 39 H 0.157 0.843 40 H 0.181 0.819 41 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -1.724 1.774 -22.354 22.490 hybrid contribution 0.731 0.184 1.464 1.647 sum -0.994 1.958 -20.889 21.005 Atomic orbital electron populations 1.22106 0.89696 1.03760 1.05301 1.19711 0.99096 0.96668 0.88069 1.22023 1.01927 0.91303 1.04920 1.20907 0.78888 0.84876 0.84618 1.90716 1.42327 1.24793 1.87070 1.45689 1.57589 1.27977 1.04410 1.20766 1.00870 0.95885 0.83212 1.20439 0.84681 0.87654 0.85161 1.90473 1.46586 1.27381 1.86533 1.41861 1.49250 1.23811 1.04733 1.19695 1.35168 1.06971 0.84651 0.89433 1.26118 0.96051 0.97313 1.01743 1.69676 1.38147 1.21508 1.26375 0.84944 0.78751 0.78026 0.76390 1.19461 1.19869 1.19442 1.19016 0.92138 0.97673 0.94832 1.21294 0.96653 0.98357 0.95645 1.17330 0.77762 1.01397 0.96304 1.91528 1.31484 1.94988 1.93819 1.21214 0.90992 0.99137 1.00452 1.15478 0.89510 1.01458 0.94192 1.25497 0.92631 0.92624 0.92515 1.81318 1.10244 1.10292 1.10601 1.21399 1.01906 0.93818 0.91330 0.90889 0.87725 0.91437 0.91868 0.88299 0.90948 0.74653 0.88949 0.88873 0.76785 0.91143 0.84332 0.81942 0.81857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 7.11 71.98 0.51 -1.33 16 2 C -0.03 -0.53 0.72 -53.67 -0.04 -0.57 16 3 C -0.14 -1.88 8.07 71.98 0.58 -1.30 16 4 C 0.52 13.17 6.35 87.66 0.56 13.72 16 5 O -0.57 -18.14 15.54 -3.06 -0.05 -18.19 16 6 N -0.70 -19.71 5.36 -466.79 -2.50 -22.21 16 7 C 0.12 4.01 6.15 85.63 0.53 4.54 16 8 C 0.43 18.78 7.85 87.66 0.69 19.46 16 9 O -0.62 -30.04 15.24 -3.09 -0.05 -30.08 16 10 N -0.56 -27.07 5.29 -306.99 -1.62 -28.69 16 11 C -0.34 -17.89 9.68 84.04 0.81 -17.08 16 12 H 0.09 4.89 7.16 -2.91 -0.02 4.86 16 13 C -0.01 -0.59 5.50 84.92 0.47 -0.13 16 14 N -0.92 -47.82 13.05 21.66 0.28 -47.54 16 15 Si 1.00 40.74 29.55 68.60 2.03 42.77 16 16 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 17 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 18 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 19 C -0.04 -0.57 4.23 -19.91 -0.08 -0.66 16 20 C -0.10 -1.74 8.34 22.37 0.19 -1.56 16 21 C 0.09 1.53 7.29 22.34 0.16 1.69 16 22 F -0.14 -2.64 17.26 44.97 0.78 -1.87 16 23 C -0.10 -1.31 9.73 22.59 0.22 -1.09 16 24 C 0.00 -0.04 5.73 -21.37 -0.12 -0.16 16 25 C 0.28 4.78 15.33 88.33 1.35 6.13 16 26 N -0.45 -9.84 18.54 19.00 0.35 -9.49 16 27 C -0.06 -0.85 8.69 22.54 0.20 -0.66 16 28 H 0.07 0.96 7.97 -2.39 -0.02 0.94 16 29 H 0.10 0.69 7.77 -2.38 -0.02 0.67 16 30 H 0.07 0.86 7.24 -2.38 -0.02 0.84 16 31 H 0.06 0.87 7.07 -2.39 -0.02 0.85 16 32 H 0.10 0.81 8.14 -2.38 -0.02 0.79 16 33 H 0.07 1.00 7.27 -2.39 -0.02 0.98 16 34 H 0.41 11.31 6.36 -92.71 -0.59 10.72 16 35 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 36 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 37 H 0.40 18.56 7.90 -92.71 -0.73 17.83 16 38 H 0.28 13.70 8.31 -92.71 -0.77 12.93 16 39 H 0.14 2.46 7.22 -2.91 -0.02 2.44 16 40 H 0.16 1.57 8.06 -2.91 -0.02 1.54 16 41 H 0.16 1.53 5.89 -2.91 -0.02 1.51 16 Total: -1.00 -66.77 364.59 5.04 -61.73 By element: Atomic # 1 Polarization: 32.75 SS G_CDS: -0.20 Total: 32.55 kcal Atomic # 6 Polarization: 15.00 SS G_CDS: 6.02 Total: 21.02 kcal Atomic # 7 Polarization: -104.44 SS G_CDS: -3.49 Total: -107.93 kcal Atomic # 8 Polarization: -48.18 SS G_CDS: -0.09 Total: -48.27 kcal Atomic # 9 Polarization: -2.64 SS G_CDS: 0.78 Total: -1.87 kcal Atomic # 14 Polarization: 40.74 SS G_CDS: 2.03 Total: 42.77 kcal Total: -66.77 5.04 -61.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343539563.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.836 kcal (2) G-P(sol) polarization free energy of solvation -66.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds