Wall clock time and date at job start Tue Mar 31 2020 18:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.46497 * 120.00073 * 60.00310 * 12 2 1 14 14 C 1.34781 * 119.99894 * 240.00308 * 12 2 1 15 15 O 1.21280 * 120.00291 * 359.97438 * 14 12 2 16 16 C 1.50699 * 119.99910 * 180.02562 * 14 12 2 17 17 N 1.46496 * 109.47455 * 179.97438 * 16 14 12 18 18 C 1.46504 * 120.00011 * 269.99837 * 17 16 14 19 19 C 1.38002 * 120.00341 * 89.99262 * 17 16 14 20 20 N 1.28895 * 124.81602 * 359.70103 * 19 17 16 21 21 C 1.34816 * 117.87585 * 179.83714 * 20 19 17 22 22 C 1.41101 * 128.73136 * 180.14771 * 21 20 19 23 23 C 1.37197 * 120.43608 * 180.30426 * 22 21 20 24 24 C 1.38715 * 120.59606 * 359.97438 * 23 22 21 25 25 C 1.37717 * 119.97628 * 0.02562 * 24 23 22 26 26 C 1.39253 * 120.20608 * 359.97438 * 25 24 23 27 27 S 1.75807 * 124.81868 * 180.02562 * 19 17 16 28 28 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 29 29 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 31 31 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 32 32 H 1.09001 * 109.46905 * 89.99959 * 13 12 2 33 33 H 1.09005 * 109.47144 * 209.99900 * 13 12 2 34 34 H 1.08993 * 109.47302 * 330.00087 * 13 12 2 35 35 H 1.09005 * 109.46708 * 299.99547 * 16 14 12 36 36 H 1.09000 * 109.47504 * 59.99304 * 16 14 12 37 37 H 1.09009 * 109.46803 * 89.99672 * 18 17 16 38 38 H 1.08991 * 109.47066 * 209.99398 * 18 17 16 39 39 H 1.09001 * 109.46958 * 330.00028 * 18 17 16 40 40 H 1.07997 * 119.78149 * 0.28690 * 22 21 20 41 41 H 1.08002 * 119.70471 * 180.02562 * 23 22 21 42 42 H 1.08003 * 120.00682 * 180.02562 * 24 23 22 43 43 H 1.08001 * 119.89460 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 6 2.7931 -0.0354 2.0834 15 8 3.0865 1.1256 1.8912 16 6 3.2959 -0.7459 3.3136 17 7 4.1101 0.1747 4.1108 18 6 5.5529 0.2688 3.8747 19 6 3.5181 0.9535 5.0842 20 7 2.2602 0.9497 5.3656 21 6 1.8317 1.7670 6.3484 22 6 0.5214 1.9435 6.8412 23 6 0.2740 2.8356 7.8538 24 6 1.3063 3.5772 8.4093 25 6 2.5931 3.4214 7.9441 26 6 2.8626 2.5205 6.9170 27 16 4.3712 2.0975 6.1109 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 0.7088 1.1611 -3.4845 32 1 2.4158 -2.7376 0.9718 33 1 1.6238 -2.2851 2.5003 34 1 0.6905 -2.3002 0.9847 35 1 2.4483 -1.0888 3.9070 36 1 3.9016 -1.6021 3.0167 37 1 5.7490 1.0344 3.1239 38 1 6.0567 0.5339 4.8041 39 1 5.9264 -0.6919 3.5201 40 1 -0.2922 1.3728 6.4184 41 1 -0.7334 2.9610 8.2223 42 1 1.1008 4.2764 9.2063 43 1 3.3958 3.9998 8.3773 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343700324.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:59 Heat of formation + Delta-G solvation = 42.343109 kcal Electronic energy + Delta-G solvation = -26026.032793 eV Core-core repulsion = 22391.479544 eV Total energy + Delta-G solvation = -3634.553250 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.16774 -39.26574 -37.53391 -35.62289 -35.02216 -32.88412 -31.01140 -30.09347 -29.51129 -28.23708 -26.21813 -26.00840 -25.19722 -23.63287 -22.37456 -21.62494 -20.21677 -18.51887 -18.38857 -17.02828 -16.74917 -16.55089 -16.21162 -15.43319 -15.30727 -14.82567 -14.79554 -14.54193 -14.22332 -14.06509 -13.68542 -13.59924 -12.81272 -12.74913 -12.55051 -12.52126 -12.37895 -12.01990 -11.89620 -11.74737 -11.53671 -11.43615 -11.06062 -10.83477 -10.82536 -10.68640 -10.26596 -10.16445 -10.07141 -9.83693 -9.48556 -9.17184 -8.90417 -8.42967 -8.13427 -7.58628 -7.54125 -6.07066 -4.15593 0.67824 1.00913 1.14881 1.67834 2.50557 2.72261 3.26578 3.31500 3.32418 3.37603 3.77100 3.95663 4.32086 4.39950 4.68194 4.87128 4.95472 5.10296 5.16616 5.19478 5.23690 5.29673 5.35254 5.41568 5.49190 5.64149 5.71010 5.86704 6.03830 6.09827 6.18788 6.27464 6.36923 6.47366 6.74823 6.78357 6.84614 6.92845 7.08076 7.44303 7.52702 7.71434 7.91888 8.02482 8.19878 8.52687 8.82943 9.04622 9.50838 10.98107 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.018709 B = 0.002935 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.245041 B = 9536.561490 C =10223.845825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.260 3.740 3 H 0.061 0.939 4 C -0.526 4.526 5 H 0.058 0.942 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.899 3.101 9 H -0.286 1.286 10 H -0.277 1.277 11 H -0.277 1.277 12 N -0.592 5.592 13 C 0.085 3.915 14 C 0.488 3.512 15 O -0.543 6.543 16 C 0.110 3.890 17 N -0.556 5.556 18 C 0.091 3.909 19 C 0.402 3.598 20 N -0.551 5.551 21 C 0.144 3.856 22 C -0.090 4.090 23 C -0.097 4.097 24 C -0.132 4.132 25 C -0.058 4.058 26 C -0.200 4.200 27 S 0.030 5.970 28 H 0.093 0.907 29 H 0.030 0.970 30 H 0.011 0.989 31 H 0.264 0.736 32 H 0.049 0.951 33 H 0.051 0.949 34 H 0.074 0.926 35 H 0.111 0.889 36 H 0.106 0.894 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.085 0.915 40 H 0.131 0.869 41 H 0.130 0.870 42 H 0.129 0.871 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.501 -1.498 20.851 21.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.160 3.840 3 H 0.079 0.921 4 C -0.565 4.565 5 H 0.076 0.924 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.212 1.212 10 H -0.203 1.203 11 H -0.202 1.202 12 N -0.324 5.324 13 C -0.059 4.059 14 C 0.273 3.727 15 O -0.420 6.420 16 C -0.019 4.019 17 N -0.272 5.272 18 C -0.051 4.051 19 C 0.026 3.974 20 N -0.276 5.276 21 C 0.023 3.977 22 C -0.112 4.112 23 C -0.118 4.118 24 C -0.154 4.154 25 C -0.081 4.081 26 C -0.319 4.319 27 S 0.280 5.720 28 H 0.111 0.889 29 H 0.049 0.951 30 H 0.030 0.970 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.129 0.871 36 H 0.123 0.877 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.103 0.897 40 H 0.149 0.851 41 H 0.148 0.852 42 H 0.147 0.853 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 5.426 -0.933 20.189 20.926 hybrid contribution -0.561 -0.490 -0.855 1.134 sum 4.865 -1.422 19.334 19.987 Atomic orbital electron populations 1.22087 0.98260 0.99320 1.00857 1.18905 0.90845 0.94417 0.79825 0.92089 1.21277 1.31916 1.12967 0.90316 0.92372 1.24904 0.94967 0.94981 0.98961 1.69877 1.36248 1.22584 1.23849 0.86554 0.79178 0.79576 0.82042 1.21171 1.20293 1.20230 1.48235 1.48931 1.11663 1.23591 1.21585 1.01895 0.83188 0.99263 1.20791 0.79790 0.87643 0.84512 1.90656 1.58173 1.16833 1.76381 1.21577 0.96953 0.91205 0.92115 1.45436 1.07429 1.40755 1.33548 1.21912 0.77250 1.03906 1.02072 1.23632 0.89775 0.91974 0.91971 1.66222 1.11530 1.28824 1.21051 1.18826 0.94638 0.92563 0.91665 1.20610 0.93584 0.99706 0.97260 1.20879 0.99418 0.95636 0.95906 1.20934 0.92077 1.01115 1.01270 1.20213 0.97336 0.96176 0.94414 1.23376 0.95545 1.07040 1.05951 1.84712 1.09380 1.42573 1.35384 0.88854 0.95106 0.96954 0.92625 0.93198 0.93006 0.90680 0.87109 0.87651 0.91192 0.91174 0.89679 0.85107 0.85216 0.85306 0.85824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 8.95 37.16 0.33 -3.27 16 2 C 0.26 6.73 2.64 -69.09 -0.18 6.55 16 3 H 0.06 1.86 6.90 -51.92 -0.36 1.50 16 4 C -0.53 -14.22 8.37 -34.44 -0.29 -14.50 16 5 H 0.06 1.53 7.65 -52.49 -0.40 1.13 16 6 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -25.37 11.32 55.43 0.63 -24.75 16 8 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 9 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 12 N -0.59 -12.62 2.75 -175.27 -0.48 -13.10 16 13 C 0.08 1.38 9.48 59.85 0.57 1.95 16 14 C 0.49 10.13 7.74 -10.98 -0.09 10.05 16 15 O -0.54 -13.67 15.76 5.56 0.09 -13.59 16 16 C 0.11 1.65 4.59 -5.20 -0.02 1.63 16 17 N -0.56 -8.21 2.45 -184.18 -0.45 -8.66 16 18 C 0.09 1.02 10.46 59.85 0.63 1.65 16 19 C 0.40 6.46 7.87 -88.91 -0.70 5.76 16 20 N -0.55 -9.64 9.79 -11.16 -0.11 -9.75 16 21 C 0.14 2.28 6.94 -84.89 -0.59 1.69 16 22 C -0.09 -1.20 10.10 -38.87 -0.39 -1.59 16 23 C -0.10 -1.01 9.99 -39.78 -0.40 -1.41 16 24 C -0.13 -1.30 10.05 -39.60 -0.40 -1.70 16 25 C -0.06 -0.66 10.06 -39.39 -0.40 -1.06 16 26 C -0.20 -2.84 6.52 -38.63 -0.25 -3.09 16 27 S 0.03 0.40 21.89 -107.50 -2.35 -1.95 16 28 H 0.09 2.50 6.07 -51.93 -0.32 2.19 16 29 H 0.03 0.69 6.66 -51.93 -0.35 0.34 16 30 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.26 7.18 8.31 -40.82 -0.34 6.85 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.05 0.66 6.44 -51.93 -0.33 0.33 16 34 H 0.07 1.26 6.43 -51.93 -0.33 0.93 16 35 H 0.11 1.60 6.86 -51.93 -0.36 1.24 16 36 H 0.11 1.21 7.86 -51.93 -0.41 0.81 16 37 H 0.07 0.89 8.14 -51.92 -0.42 0.47 16 38 H 0.07 0.64 7.04 -51.93 -0.37 0.28 16 39 H 0.08 0.73 7.89 -51.93 -0.41 0.32 16 40 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 41 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 42 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 43 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 368.63 15.07 5.56 5.56 Total: -1.00 -34.60 368.63 -10.14 -44.74 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -5.72 Total: 1.18 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: -2.27 Total: 4.31 kcal Atomic # 7 Polarization: -55.84 SS G_CDS: -0.42 Total: -56.25 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: 0.09 Total: -13.59 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: 0.40 SS G_CDS: -2.35 Total: -1.95 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.60 -10.14 -44.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343700324.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.084 kcal (2) G-P(sol) polarization free energy of solvation -34.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds