Wall clock time and date at job start Tue Mar 31 2020 18:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.46497 * 120.00073 * 60.00310 * 12 2 1 14 14 C 1.34781 * 119.99894 * 240.00308 * 12 2 1 15 15 O 1.21280 * 120.00291 * 359.97438 * 14 12 2 16 16 C 1.50699 * 119.99910 * 180.02562 * 14 12 2 17 17 N 1.46496 * 109.47455 * 179.97438 * 16 14 12 18 18 C 1.46504 * 120.00011 * 269.99837 * 17 16 14 19 19 C 1.38002 * 120.00341 * 89.99262 * 17 16 14 20 20 N 1.28895 * 124.81602 * 359.70103 * 19 17 16 21 21 C 1.34816 * 117.87585 * 179.83714 * 20 19 17 22 22 C 1.41101 * 128.73136 * 180.14771 * 21 20 19 23 23 C 1.37197 * 120.43608 * 180.30426 * 22 21 20 24 24 C 1.38715 * 120.59606 * 359.97438 * 23 22 21 25 25 C 1.37717 * 119.97628 * 0.02562 * 24 23 22 26 26 C 1.39253 * 120.20608 * 359.97438 * 25 24 23 27 27 S 1.75807 * 124.81868 * 180.02562 * 19 17 16 28 28 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 29 29 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 31 31 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 32 32 H 1.09001 * 109.46905 * 89.99959 * 13 12 2 33 33 H 1.09005 * 109.47144 * 209.99900 * 13 12 2 34 34 H 1.08993 * 109.47302 * 330.00087 * 13 12 2 35 35 H 1.09005 * 109.46708 * 299.99547 * 16 14 12 36 36 H 1.09000 * 109.47504 * 59.99304 * 16 14 12 37 37 H 1.09009 * 109.46803 * 89.99672 * 18 17 16 38 38 H 1.08991 * 109.47066 * 209.99398 * 18 17 16 39 39 H 1.09001 * 109.46958 * 330.00028 * 18 17 16 40 40 H 1.07997 * 119.78149 * 0.28690 * 22 21 20 41 41 H 1.08002 * 119.70471 * 180.02562 * 23 22 21 42 42 H 1.08003 * 120.00682 * 180.02562 * 24 23 22 43 43 H 1.08001 * 119.89460 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 6 2.7931 -0.0354 2.0834 15 8 3.0865 1.1256 1.8912 16 6 3.2959 -0.7459 3.3136 17 7 4.1101 0.1747 4.1108 18 6 5.5529 0.2688 3.8747 19 6 3.5181 0.9535 5.0842 20 7 2.2602 0.9497 5.3656 21 6 1.8317 1.7670 6.3484 22 6 0.5214 1.9435 6.8412 23 6 0.2740 2.8356 7.8538 24 6 1.3063 3.5772 8.4093 25 6 2.5931 3.4214 7.9441 26 6 2.8626 2.5205 6.9170 27 16 4.3712 2.0975 6.1109 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 0.7088 1.1611 -3.4845 32 1 2.4158 -2.7376 0.9718 33 1 1.6238 -2.2851 2.5003 34 1 0.6905 -2.3002 0.9847 35 1 2.4483 -1.0888 3.9070 36 1 3.9016 -1.6021 3.0167 37 1 5.7490 1.0344 3.1239 38 1 6.0567 0.5339 4.8041 39 1 5.9264 -0.6919 3.5201 40 1 -0.2922 1.3728 6.4184 41 1 -0.7334 2.9610 8.2223 42 1 1.1008 4.2764 9.2063 43 1 3.3958 3.9998 8.3773 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343700324.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:58 Heat of formation + Delta-G solvation = 21.386650 kcal Electronic energy + Delta-G solvation = -26026.941533 eV Core-core repulsion = 22391.479544 eV Total energy + Delta-G solvation = -3635.461990 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.27163 -40.70639 -38.69146 -37.14297 -36.33840 -34.82755 -31.91736 -31.87015 -30.47783 -29.59527 -27.60544 -27.30529 -27.10945 -24.66192 -23.52931 -23.01162 -21.56073 -19.95402 -19.51409 -18.57064 -18.21159 -17.89332 -17.48606 -17.11658 -16.33483 -16.29173 -16.10478 -15.87027 -15.44832 -15.21793 -14.87993 -14.64352 -14.51486 -14.11295 -14.04979 -13.57620 -13.48589 -13.29562 -13.15585 -12.96651 -12.91850 -12.84940 -12.72303 -12.67756 -12.60555 -12.19426 -12.13543 -11.78465 -11.22506 -11.08584 -11.03610 -10.61703 -10.55737 -10.30307 -9.33036 -9.10877 -8.62087 -8.15045 -6.32754 -0.34143 -0.03102 0.23327 0.64160 1.40744 1.43343 1.47033 1.51032 1.71207 1.79298 2.33046 2.52079 2.81669 3.12440 3.30803 3.71906 3.77493 3.98528 4.15928 4.19886 4.25971 4.38295 4.43006 4.46206 4.47913 4.64817 4.67590 4.74933 4.78868 4.84076 4.97145 5.02214 5.05639 5.17628 5.32210 5.42506 5.47765 5.51783 5.60429 5.66078 5.82089 5.91629 6.02294 6.14249 6.75725 6.80880 6.85798 7.31145 7.47541 8.89182 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.018709 B = 0.002935 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.245041 B = 9536.561490 C =10223.845825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.265 3.735 3 H 0.001 0.999 4 C -0.536 4.536 5 H 0.065 0.935 6 C 0.012 3.988 7 N -0.921 5.921 8 Si 0.968 3.032 9 H -0.286 1.286 10 H -0.275 1.275 11 H -0.260 1.260 12 N -0.600 5.600 13 C 0.080 3.920 14 C 0.478 3.522 15 O -0.600 6.600 16 C 0.125 3.875 17 N -0.563 5.563 18 C 0.087 3.913 19 C 0.375 3.625 20 N -0.582 5.582 21 C 0.102 3.898 22 C -0.112 4.112 23 C -0.089 4.089 24 C -0.119 4.119 25 C -0.066 4.066 26 C -0.220 4.220 27 S 0.057 5.943 28 H 0.067 0.933 29 H 0.050 0.950 30 H 0.011 0.989 31 H 0.264 0.736 32 H 0.066 0.934 33 H 0.092 0.908 34 H 0.068 0.932 35 H 0.119 0.881 36 H 0.150 0.850 37 H 0.046 0.954 38 H 0.089 0.911 39 H 0.116 0.884 40 H 0.128 0.872 41 H 0.164 0.836 42 H 0.170 0.830 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.029 -2.898 22.858 23.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.163 3.837 3 H 0.019 0.981 4 C -0.575 4.575 5 H 0.084 0.916 6 C -0.188 4.188 7 N -0.560 5.560 8 Si 0.793 3.207 9 H -0.212 1.212 10 H -0.200 1.200 11 H -0.185 1.185 12 N -0.332 5.332 13 C -0.062 4.062 14 C 0.265 3.735 15 O -0.481 6.481 16 C -0.004 4.004 17 N -0.279 5.279 18 C -0.054 4.054 19 C 0.000 4.000 20 N -0.309 5.309 21 C -0.018 4.018 22 C -0.134 4.134 23 C -0.109 4.109 24 C -0.140 4.140 25 C -0.089 4.089 26 C -0.339 4.339 27 S 0.306 5.694 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.030 0.970 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.111 0.889 34 H 0.087 0.913 35 H 0.137 0.863 36 H 0.167 0.833 37 H 0.064 0.936 38 H 0.107 0.893 39 H 0.135 0.865 40 H 0.146 0.854 41 H 0.182 0.818 42 H 0.187 0.813 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 5.954 -2.372 22.240 23.145 hybrid contribution -0.794 0.080 -1.348 1.567 sum 5.160 -2.293 20.891 21.641 Atomic orbital electron populations 1.21878 0.97590 1.00100 0.99502 1.18446 0.91293 0.91954 0.82000 0.98124 1.21555 1.31924 1.13094 0.90917 0.91643 1.25809 0.95065 0.95633 1.02248 1.70042 1.37417 1.24088 1.24462 0.85464 0.78461 0.78980 0.77843 1.21158 1.20037 1.18483 1.48251 1.48969 1.13577 1.22363 1.21868 1.01932 0.80231 1.02174 1.21931 0.78714 0.87211 0.85655 1.90621 1.60108 1.19557 1.77840 1.21562 0.98158 0.91518 0.89147 1.45686 1.08400 1.40676 1.33113 1.22112 0.75810 1.05000 1.02518 1.23978 0.90207 0.92898 0.92928 1.66196 1.12631 1.29981 1.22091 1.19209 0.96111 0.93829 0.92615 1.20868 0.92818 1.01088 0.98614 1.21326 1.01369 0.93938 0.94283 1.21464 0.91032 1.00466 1.01075 1.20662 0.99009 0.95615 0.93622 1.23721 0.95414 1.07839 1.06976 1.84392 1.08857 1.41614 1.34490 0.91469 0.93072 0.96978 0.92706 0.91549 0.88937 0.91312 0.86334 0.83286 0.93562 0.89270 0.86518 0.85362 0.81847 0.81290 0.83365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.71 8.95 71.98 0.64 -6.06 16 2 C 0.27 14.27 2.64 44.24 0.12 14.39 16 3 H 0.00 0.05 6.90 -2.38 -0.02 0.03 16 4 C -0.54 -29.40 8.37 25.60 0.21 -29.18 16 5 H 0.07 3.40 7.65 -2.91 -0.02 3.38 16 6 C 0.01 0.65 5.30 84.66 0.45 1.10 16 7 N -0.92 -54.41 11.32 21.45 0.24 -54.17 16 8 Si 0.97 43.18 29.54 68.60 2.03 45.20 16 9 H -0.29 -12.65 7.11 99.48 0.71 -11.95 16 10 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 11 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 12 N -0.60 -25.82 2.75 -826.81 -2.28 -28.10 16 13 C 0.08 2.46 9.48 127.77 1.21 3.67 16 14 C 0.48 20.24 7.74 87.66 0.68 20.91 16 15 O -0.60 -31.97 15.76 -3.03 -0.05 -32.01 16 16 C 0.12 3.60 4.59 85.63 0.39 4.00 16 17 N -0.56 -16.46 2.45 -736.60 -1.80 -18.27 16 18 C 0.09 1.88 10.46 127.77 1.34 3.22 16 19 C 0.38 12.25 7.87 179.75 1.41 13.66 16 20 N -0.58 -20.99 9.79 -189.22 -1.85 -22.85 16 21 C 0.10 3.29 6.94 39.76 0.28 3.56 16 22 C -0.11 -2.97 10.10 22.73 0.23 -2.74 16 23 C -0.09 -1.64 9.99 22.14 0.22 -1.42 16 24 C -0.12 -1.95 10.05 22.26 0.22 -1.73 16 25 C -0.07 -1.37 10.06 22.39 0.23 -1.14 16 26 C -0.22 -6.19 6.52 22.89 0.15 -6.04 16 27 S 0.06 1.53 21.89 -56.49 -1.24 0.29 16 28 H 0.07 3.76 6.07 -2.39 -0.01 3.75 16 29 H 0.05 2.32 6.66 -2.39 -0.02 2.30 16 30 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 32 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.09 2.08 6.44 -2.38 -0.02 2.07 16 34 H 0.07 2.20 6.43 -2.39 -0.02 2.18 16 35 H 0.12 3.26 6.86 -2.38 -0.02 3.25 16 36 H 0.15 2.95 7.86 -2.39 -0.02 2.93 16 37 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 38 H 0.09 1.54 7.04 -2.39 -0.02 1.52 16 39 H 0.12 1.72 7.89 -2.39 -0.02 1.70 16 40 H 0.13 3.27 8.06 -2.91 -0.02 3.25 16 41 H 0.16 1.85 8.06 -2.91 -0.02 1.82 16 42 H 0.17 1.42 8.06 -2.91 -0.02 1.39 16 43 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -81.69 368.63 3.86 -77.83 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: 1.03 Total: 15.87 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: 7.78 Total: 16.20 kcal Atomic # 7 Polarization: -117.69 SS G_CDS: -5.69 Total: -123.38 kcal Atomic # 8 Polarization: -31.97 SS G_CDS: -0.05 Total: -32.01 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.20 kcal Atomic # 16 Polarization: 1.53 SS G_CDS: -1.24 Total: 0.29 kcal Total: -81.69 3.86 -77.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343700324.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.214 kcal (2) G-P(sol) polarization free energy of solvation -81.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds