Wall clock time and date at job start Tue Mar 31 2020 18:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08988 * 109.47804 * 2 1 4 4 C 1.50701 * 109.46983 * 120.00296 * 2 1 3 5 5 H 1.08005 * 119.99935 * 116.61791 * 4 2 1 6 6 C 1.37877 * 120.00206 * 296.62390 * 4 2 1 7 7 N 1.31514 * 119.99641 * 351.52449 * 6 4 2 8 8 Si 1.86799 * 120.00131 * 171.80826 * 6 4 2 9 9 H 1.48505 * 109.46565 * 264.97209 * 8 6 4 10 10 H 1.48494 * 109.47297 * 24.97223 * 8 6 4 11 11 H 1.48497 * 109.46920 * 144.97545 * 8 6 4 12 12 N 1.46502 * 109.46800 * 239.99943 * 2 1 3 13 13 C 1.46503 * 120.00362 * 300.00504 * 12 2 1 14 14 C 1.34781 * 120.00180 * 120.00415 * 12 2 1 15 15 O 1.21287 * 119.99492 * 0.02562 * 14 12 2 16 16 C 1.50694 * 120.00297 * 179.97438 * 14 12 2 17 17 N 1.46501 * 109.47197 * 179.97438 * 16 14 12 18 18 C 1.46491 * 120.00049 * 270.00167 * 17 16 14 19 19 C 1.38005 * 119.99712 * 89.99974 * 17 16 14 20 20 N 1.28896 * 124.82037 * 359.70140 * 19 17 16 21 21 C 1.34814 * 117.88013 * 179.83981 * 20 19 17 22 22 C 1.41090 * 128.73616 * 180.14754 * 21 20 19 23 23 C 1.37203 * 120.43857 * 180.30184 * 22 21 20 24 24 C 1.38700 * 120.59429 * 359.97438 * 23 22 21 25 25 C 1.37724 * 119.98003 * 359.97438 * 24 23 22 26 26 C 1.39256 * 120.20347 * 0.02562 * 25 24 23 27 27 S 1.75804 * 124.81469 * 179.97438 * 19 17 16 28 28 H 1.08992 * 109.47639 * 185.89884 * 1 2 3 29 29 H 1.08995 * 109.46632 * 305.90308 * 1 2 3 30 30 H 1.09009 * 109.46613 * 65.89486 * 1 2 3 31 31 H 0.96998 * 119.99879 * 180.27648 * 7 6 4 32 32 H 1.09001 * 109.47202 * 89.99837 * 13 12 2 33 33 H 1.09003 * 109.47187 * 210.00516 * 13 12 2 34 34 H 1.09001 * 109.46679 * 329.99889 * 13 12 2 35 35 H 1.09000 * 109.47119 * 300.00271 * 16 14 12 36 36 H 1.09000 * 109.47150 * 60.00094 * 16 14 12 37 37 H 1.08997 * 109.47428 * 90.00253 * 18 17 16 38 38 H 1.09005 * 109.47167 * 210.00007 * 18 17 16 39 39 H 1.09003 * 109.47508 * 329.99664 * 18 17 16 40 40 H 1.08005 * 119.77781 * 0.27728 * 22 21 20 41 41 H 1.08007 * 119.70147 * 180.02562 * 23 22 21 42 42 H 1.08007 * 120.01070 * 180.02562 * 24 23 22 43 43 H 1.08004 * 119.89553 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6074 -1.6194 1.1322 6 6 1.7576 -0.2003 2.4815 7 7 1.2049 0.9871 2.6006 8 14 2.1777 -1.1923 4.0076 9 1 0.9819 -1.9558 4.4462 10 1 3.2810 -2.1362 3.6963 11 1 2.6040 -0.2733 5.0934 12 7 2.0183 -0.6906 -1.1962 13 6 1.6642 -2.0932 -1.4281 14 6 2.7932 -0.0357 -2.0834 15 8 3.0866 1.1253 -1.8912 16 6 3.2959 -0.7463 -3.3136 17 7 4.1093 0.1747 -4.1114 18 6 3.4799 1.0006 -5.1447 19 6 5.4684 0.2642 -3.8894 20 7 6.1156 -0.4125 -3.0037 21 6 7.4461 -0.2166 -2.9088 22 6 8.3684 -0.8287 -2.0339 23 6 9.6981 -0.4936 -2.0804 24 6 10.1570 0.4504 -2.9870 25 6 9.2750 1.0601 -3.8514 26 6 7.9219 0.7323 -3.8182 27 16 6.5617 1.3225 -4.7700 28 1 -0.3634 -1.0221 0.1056 29 1 -0.3632 0.6026 0.8324 30 1 -0.3633 0.4198 -0.9382 31 1 1.0153 1.3478 3.4808 32 1 0.7374 -2.1443 -1.9995 33 1 2.4627 -2.5820 -1.9865 34 1 1.5293 -2.5969 -0.4709 35 1 3.9015 -1.6025 -3.0166 36 1 2.4483 -1.0891 -3.9070 37 1 3.1619 1.9478 -4.7091 38 1 4.1960 1.1906 -5.9442 39 1 2.6134 0.4779 -5.5499 40 1 8.0253 -1.5655 -1.3227 41 1 10.3939 -0.9699 -1.4054 42 1 11.2058 0.7067 -3.0157 43 1 9.6337 1.7953 -4.5566 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343700326.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:03 Heat of formation + Delta-G solvation = 41.188687 kcal Electronic energy + Delta-G solvation = -26122.730349 eV Core-core repulsion = 22488.127040 eV Total energy + Delta-G solvation = -3634.603309 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.12720 -39.24859 -37.50570 -35.59475 -35.00164 -32.83172 -30.96053 -30.14055 -29.47992 -28.27811 -26.19885 -25.97948 -25.16878 -23.59437 -22.34195 -21.62727 -20.21659 -18.47980 -18.39214 -17.00450 -16.77178 -16.49832 -16.13942 -15.43627 -15.26889 -14.87453 -14.75351 -14.45754 -14.19622 -14.01285 -13.65288 -13.57424 -12.83957 -12.69073 -12.53538 -12.42972 -12.36832 -11.98820 -11.85607 -11.76812 -11.58565 -11.53460 -10.99584 -10.88476 -10.79367 -10.73158 -10.24404 -10.17617 -10.02753 -9.80767 -9.43403 -9.20607 -8.87259 -8.39078 -8.09075 -7.59808 -7.51060 -6.06949 -4.11411 0.71992 1.04429 1.19873 1.71121 2.54790 2.74831 3.27682 3.33714 3.36230 3.40191 3.82240 3.97435 4.35638 4.43054 4.72252 4.88733 4.98879 5.10799 5.15348 5.23550 5.25380 5.29253 5.39878 5.44750 5.53365 5.61395 5.73417 5.92089 5.98528 6.14074 6.23828 6.34403 6.41795 6.50544 6.69348 6.74920 6.79331 6.94280 7.00419 7.36243 7.56115 7.71172 7.94947 7.97459 8.19327 8.52612 8.86729 9.06119 9.53581 11.00661 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012251 B = 0.003609 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.019253 B = 7755.564705 C = 9294.373066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.258 3.742 3 H 0.066 0.934 4 C -0.527 4.527 5 H 0.060 0.940 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.895 3.105 9 H -0.280 1.280 10 H -0.274 1.274 11 H -0.286 1.286 12 N -0.592 5.592 13 C 0.081 3.919 14 C 0.488 3.512 15 O -0.541 6.541 16 C 0.111 3.889 17 N -0.558 5.558 18 C 0.092 3.908 19 C 0.401 3.599 20 N -0.547 5.547 21 C 0.144 3.856 22 C -0.088 4.088 23 C -0.098 4.098 24 C -0.132 4.132 25 C -0.060 4.060 26 C -0.199 4.199 27 S 0.028 5.972 28 H 0.033 0.967 29 H 0.076 0.924 30 H 0.013 0.987 31 H 0.263 0.737 32 H 0.043 0.957 33 H 0.053 0.947 34 H 0.082 0.918 35 H 0.112 0.888 36 H 0.104 0.896 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.132 0.868 41 H 0.130 0.870 42 H 0.129 0.871 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.977 -3.952 -17.281 20.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.158 3.842 3 H 0.084 0.916 4 C -0.566 4.566 5 H 0.078 0.922 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.722 3.278 9 H -0.206 1.206 10 H -0.198 1.198 11 H -0.212 1.212 12 N -0.324 5.324 13 C -0.063 4.063 14 C 0.272 3.728 15 O -0.419 6.419 16 C -0.018 4.018 17 N -0.274 5.274 18 C -0.051 4.051 19 C 0.026 3.974 20 N -0.272 5.272 21 C 0.023 3.977 22 C -0.110 4.110 23 C -0.119 4.119 24 C -0.153 4.153 25 C -0.082 4.082 26 C -0.318 4.318 27 S 0.277 5.723 28 H 0.052 0.948 29 H 0.095 0.905 30 H 0.032 0.968 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.101 0.899 35 H 0.130 0.870 36 H 0.122 0.878 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.102 0.898 40 H 0.150 0.850 41 H 0.148 0.852 42 H 0.147 0.853 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 9.369 -2.823 -17.583 20.122 hybrid contribution 0.519 -0.938 1.632 1.953 sum 9.888 -3.761 -15.951 19.140 Atomic orbital electron populations 1.22007 0.98494 0.99970 0.99304 1.18912 0.90382 0.94890 0.80037 0.91611 1.21295 1.34800 1.10220 0.90288 0.92170 1.24893 0.95117 0.94677 0.98933 1.69963 1.43119 1.15422 1.23839 0.86535 0.78564 0.80014 0.82642 1.20618 1.19843 1.21168 1.48222 1.49123 1.11533 1.23534 1.21636 0.98650 0.83401 1.02614 1.20807 0.79473 0.87656 0.84822 1.90662 1.57591 1.17098 1.76531 1.21564 0.95786 0.92406 0.92050 1.45402 1.00863 1.43596 1.37500 1.21887 0.98332 0.95774 0.89057 1.23622 0.89764 0.92115 0.91926 1.66216 1.06714 1.31049 1.23242 1.18815 0.87776 0.95144 0.95916 1.20639 0.91539 1.00493 0.98298 1.20881 0.94858 0.97578 0.98563 1.20933 0.99315 0.98229 0.96844 1.20207 0.89548 0.99336 0.99157 1.23372 0.98589 1.05766 1.04099 1.84656 0.99326 1.46914 1.41392 0.94758 0.90492 0.96780 0.92752 0.93807 0.92852 0.89948 0.87024 0.87805 0.91320 0.91173 0.89796 0.85015 0.85199 0.85311 0.85837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 8.85 37.16 0.33 -2.94 16 2 C 0.26 6.64 2.52 -69.08 -0.17 6.47 16 3 H 0.07 2.01 6.89 -51.94 -0.36 1.65 16 4 C -0.53 -14.49 8.00 -34.44 -0.28 -14.77 16 5 H 0.06 1.64 7.22 -52.48 -0.38 1.26 16 6 C 0.07 1.86 5.24 -17.82 -0.09 1.76 16 7 N -0.89 -25.72 12.01 55.43 0.67 -25.06 16 8 Si 0.89 21.38 29.55 -169.99 -5.02 16.36 16 9 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 N -0.59 -12.57 2.75 -175.26 -0.48 -13.05 16 13 C 0.08 1.31 9.35 59.85 0.56 1.87 16 14 C 0.49 10.14 7.74 -10.99 -0.09 10.06 16 15 O -0.54 -13.70 15.76 5.55 0.09 -13.61 16 16 C 0.11 1.66 4.59 -5.20 -0.02 1.64 16 17 N -0.56 -8.27 2.45 -184.19 -0.45 -8.73 16 18 C 0.09 1.00 10.46 59.84 0.63 1.63 16 19 C 0.40 6.63 7.87 -88.91 -0.70 5.93 16 20 N -0.55 -10.05 9.79 -11.16 -0.11 -10.16 16 21 C 0.14 2.41 6.94 -84.90 -0.59 1.82 16 22 C -0.09 -1.26 10.10 -38.88 -0.39 -1.65 16 23 C -0.10 -1.10 9.99 -39.79 -0.40 -1.50 16 24 C -0.13 -1.38 10.05 -39.60 -0.40 -1.78 16 25 C -0.06 -0.71 10.06 -39.39 -0.40 -1.11 16 26 C -0.20 -2.95 6.52 -38.63 -0.25 -3.20 16 27 S 0.03 0.38 21.89 -107.50 -2.35 -1.97 16 28 H 0.03 0.74 7.86 -51.93 -0.41 0.33 16 29 H 0.08 1.98 6.84 -51.93 -0.36 1.63 16 30 H 0.01 0.29 8.14 -51.92 -0.42 -0.13 16 31 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.70 6.44 -51.93 -0.33 0.37 16 34 H 0.08 1.44 6.96 -51.93 -0.36 1.08 16 35 H 0.11 1.68 6.87 -51.93 -0.36 1.32 16 36 H 0.10 1.14 7.86 -51.93 -0.41 0.74 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.07 0.63 7.04 -51.93 -0.37 0.26 16 39 H 0.08 0.67 7.89 -51.93 -0.41 0.26 16 40 H 0.13 1.80 8.06 -52.48 -0.42 1.37 16 41 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 42 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 43 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 LS Contribution 370.62 15.07 5.59 5.59 Total: -1.00 -35.35 370.62 -10.17 -45.52 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -5.83 Total: 0.89 kcal Atomic # 6 Polarization: 6.47 SS G_CDS: -2.26 Total: 4.21 kcal Atomic # 7 Polarization: -56.61 SS G_CDS: -0.38 Total: -56.99 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: 0.09 Total: -13.61 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: 0.38 SS G_CDS: -2.35 Total: -1.97 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.35 -10.17 -45.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343700326.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.711 kcal (2) G-P(sol) polarization free energy of solvation -35.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds