Wall clock time and date at job start Tue Mar 31 2020 18:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08988 * 109.47804 * 2 1 4 4 C 1.50701 * 109.46983 * 120.00296 * 2 1 3 5 5 H 1.08005 * 119.99935 * 116.61791 * 4 2 1 6 6 C 1.37877 * 120.00206 * 296.62390 * 4 2 1 7 7 N 1.31514 * 119.99641 * 351.52449 * 6 4 2 8 8 Si 1.86799 * 120.00131 * 171.80826 * 6 4 2 9 9 H 1.48505 * 109.46565 * 264.97209 * 8 6 4 10 10 H 1.48494 * 109.47297 * 24.97223 * 8 6 4 11 11 H 1.48497 * 109.46920 * 144.97545 * 8 6 4 12 12 N 1.46502 * 109.46800 * 239.99943 * 2 1 3 13 13 C 1.46503 * 120.00362 * 300.00504 * 12 2 1 14 14 C 1.34781 * 120.00180 * 120.00415 * 12 2 1 15 15 O 1.21287 * 119.99492 * 0.02562 * 14 12 2 16 16 C 1.50694 * 120.00297 * 179.97438 * 14 12 2 17 17 N 1.46501 * 109.47197 * 179.97438 * 16 14 12 18 18 C 1.46491 * 120.00049 * 270.00167 * 17 16 14 19 19 C 1.38005 * 119.99712 * 89.99974 * 17 16 14 20 20 N 1.28896 * 124.82037 * 359.70140 * 19 17 16 21 21 C 1.34814 * 117.88013 * 179.83981 * 20 19 17 22 22 C 1.41090 * 128.73616 * 180.14754 * 21 20 19 23 23 C 1.37203 * 120.43857 * 180.30184 * 22 21 20 24 24 C 1.38700 * 120.59429 * 359.97438 * 23 22 21 25 25 C 1.37724 * 119.98003 * 359.97438 * 24 23 22 26 26 C 1.39256 * 120.20347 * 0.02562 * 25 24 23 27 27 S 1.75804 * 124.81469 * 179.97438 * 19 17 16 28 28 H 1.08992 * 109.47639 * 185.89884 * 1 2 3 29 29 H 1.08995 * 109.46632 * 305.90308 * 1 2 3 30 30 H 1.09009 * 109.46613 * 65.89486 * 1 2 3 31 31 H 0.96998 * 119.99879 * 180.27648 * 7 6 4 32 32 H 1.09001 * 109.47202 * 89.99837 * 13 12 2 33 33 H 1.09003 * 109.47187 * 210.00516 * 13 12 2 34 34 H 1.09001 * 109.46679 * 329.99889 * 13 12 2 35 35 H 1.09000 * 109.47119 * 300.00271 * 16 14 12 36 36 H 1.09000 * 109.47150 * 60.00094 * 16 14 12 37 37 H 1.08997 * 109.47428 * 90.00253 * 18 17 16 38 38 H 1.09005 * 109.47167 * 210.00007 * 18 17 16 39 39 H 1.09003 * 109.47508 * 329.99664 * 18 17 16 40 40 H 1.08005 * 119.77781 * 0.27728 * 22 21 20 41 41 H 1.08007 * 119.70147 * 180.02562 * 23 22 21 42 42 H 1.08007 * 120.01070 * 180.02562 * 24 23 22 43 43 H 1.08004 * 119.89553 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6074 -1.6194 1.1322 6 6 1.7576 -0.2003 2.4815 7 7 1.2049 0.9871 2.6006 8 14 2.1777 -1.1923 4.0076 9 1 0.9819 -1.9558 4.4462 10 1 3.2810 -2.1362 3.6963 11 1 2.6040 -0.2733 5.0934 12 7 2.0183 -0.6906 -1.1962 13 6 1.6642 -2.0932 -1.4281 14 6 2.7932 -0.0357 -2.0834 15 8 3.0866 1.1253 -1.8912 16 6 3.2959 -0.7463 -3.3136 17 7 4.1093 0.1747 -4.1114 18 6 3.4799 1.0006 -5.1447 19 6 5.4684 0.2642 -3.8894 20 7 6.1156 -0.4125 -3.0037 21 6 7.4461 -0.2166 -2.9088 22 6 8.3684 -0.8287 -2.0339 23 6 9.6981 -0.4936 -2.0804 24 6 10.1570 0.4504 -2.9870 25 6 9.2750 1.0601 -3.8514 26 6 7.9219 0.7323 -3.8182 27 16 6.5617 1.3225 -4.7700 28 1 -0.3634 -1.0221 0.1056 29 1 -0.3632 0.6026 0.8324 30 1 -0.3633 0.4198 -0.9382 31 1 1.0153 1.3478 3.4808 32 1 0.7374 -2.1443 -1.9995 33 1 2.4627 -2.5820 -1.9865 34 1 1.5293 -2.5969 -0.4709 35 1 3.9015 -1.6025 -3.0166 36 1 2.4483 -1.0891 -3.9070 37 1 3.1619 1.9478 -4.7091 38 1 4.1960 1.1906 -5.9442 39 1 2.6134 0.4779 -5.5499 40 1 8.0253 -1.5655 -1.3227 41 1 10.3939 -0.9699 -1.4054 42 1 11.2058 0.7067 -3.0157 43 1 9.6337 1.7953 -4.5566 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343700326.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:02 Heat of formation + Delta-G solvation = 19.287959 kcal Electronic energy + Delta-G solvation = -26123.680036 eV Core-core repulsion = 22488.127040 eV Total energy + Delta-G solvation = -3635.552996 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.26954 -40.70013 -38.68559 -37.12099 -36.33738 -34.80202 -31.93672 -31.91365 -30.48556 -29.60663 -27.53670 -27.30163 -27.10640 -24.66513 -23.54352 -23.02631 -21.57642 -19.95397 -19.51669 -18.58688 -18.24058 -17.80130 -17.51212 -17.11181 -16.37227 -16.27005 -16.12051 -15.84983 -15.40486 -15.24093 -14.85341 -14.64756 -14.49626 -14.04509 -13.97191 -13.66778 -13.56158 -13.29325 -13.13140 -13.00309 -12.94413 -12.78946 -12.74088 -12.69318 -12.63445 -12.25851 -12.12248 -11.79543 -11.24763 -11.07979 -11.03476 -10.60632 -10.55020 -10.29902 -9.32952 -9.10988 -8.62073 -8.19096 -6.32416 -0.34606 -0.03023 0.22251 0.63094 1.37681 1.39029 1.46831 1.49883 1.72622 1.79349 2.34026 2.51615 2.80822 3.09819 3.31370 3.72806 3.77096 3.99121 4.14882 4.20659 4.27119 4.37309 4.42862 4.47577 4.50411 4.64405 4.74667 4.75994 4.76580 4.84374 4.96166 5.00376 5.05519 5.16665 5.31338 5.45846 5.47173 5.50013 5.58637 5.65796 5.81300 5.90852 6.01228 6.12422 6.75933 6.81899 6.86875 7.30952 7.48077 8.87594 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012251 B = 0.003609 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.019253 B = 7755.564705 C = 9294.373066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.263 3.737 3 H 0.004 0.996 4 C -0.540 4.540 5 H 0.059 0.941 6 C 0.015 3.985 7 N -0.919 5.919 8 Si 0.962 3.038 9 H -0.264 1.264 10 H -0.270 1.270 11 H -0.288 1.288 12 N -0.600 5.600 13 C 0.076 3.924 14 C 0.477 3.523 15 O -0.599 6.599 16 C 0.125 3.875 17 N -0.563 5.563 18 C 0.087 3.913 19 C 0.375 3.625 20 N -0.585 5.585 21 C 0.102 3.898 22 C -0.115 4.115 23 C -0.089 4.089 24 C -0.119 4.119 25 C -0.065 4.065 26 C -0.221 4.221 27 S 0.061 5.939 28 H 0.052 0.948 29 H 0.048 0.952 30 H 0.029 0.971 31 H 0.264 0.736 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.067 0.933 35 H 0.113 0.887 36 H 0.155 0.845 37 H 0.047 0.953 38 H 0.087 0.913 39 H 0.119 0.881 40 H 0.125 0.875 41 H 0.163 0.837 42 H 0.171 0.829 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.369 -5.619 -18.765 22.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.160 3.840 3 H 0.022 0.978 4 C -0.579 4.579 5 H 0.077 0.923 6 C -0.184 4.184 7 N -0.558 5.558 8 Si 0.787 3.213 9 H -0.189 1.189 10 H -0.195 1.195 11 H -0.214 1.214 12 N -0.331 5.331 13 C -0.066 4.066 14 C 0.264 3.736 15 O -0.481 6.481 16 C -0.004 4.004 17 N -0.279 5.279 18 C -0.054 4.054 19 C -0.001 4.001 20 N -0.312 5.312 21 C -0.017 4.017 22 C -0.136 4.136 23 C -0.109 4.109 24 C -0.140 4.140 25 C -0.088 4.088 26 C -0.340 4.340 27 S 0.311 5.689 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.048 0.952 31 H 0.073 0.927 32 H 0.096 0.904 33 H 0.105 0.895 34 H 0.086 0.914 35 H 0.131 0.869 36 H 0.172 0.828 37 H 0.066 0.934 38 H 0.106 0.894 39 H 0.138 0.862 40 H 0.143 0.857 41 H 0.180 0.820 42 H 0.188 0.812 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 10.759 -4.532 -19.105 22.389 hybrid contribution 0.227 -0.366 2.083 2.127 sum 10.986 -4.898 -17.022 20.843 Atomic orbital electron populations 1.21763 0.96817 1.00589 0.98921 1.18470 0.91567 0.92139 0.81808 0.97774 1.21584 1.34767 1.10138 0.91369 0.92310 1.25752 0.95048 0.95543 1.02099 1.70108 1.44238 1.16962 1.24506 0.85491 0.78829 0.78467 0.78548 1.18910 1.19450 1.21355 1.48247 1.49154 1.13468 1.22256 1.21919 1.01521 0.80278 1.02865 1.21938 0.78284 0.87226 0.86110 1.90627 1.59473 1.19929 1.78073 1.21562 0.97231 0.91472 0.90117 1.45703 1.00421 1.44007 1.37770 1.22128 0.99940 0.94941 0.88417 1.24012 0.90724 0.92840 0.92503 1.66194 1.07997 1.32519 1.24490 1.19183 0.87784 0.96991 0.97738 1.20867 0.92874 1.01260 0.98643 1.21316 0.93930 0.97062 0.98640 1.21464 1.01040 0.96491 0.95032 1.20676 0.88495 0.99755 0.99880 1.23735 1.00086 1.05907 1.04275 1.84302 0.98210 1.45903 1.40516 0.92856 0.93346 0.95181 0.92727 0.90435 0.89542 0.91445 0.86894 0.82754 0.93420 0.89403 0.86224 0.85749 0.81953 0.81181 0.83159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.84 8.85 71.98 0.64 -5.21 16 2 C 0.26 14.03 2.52 44.24 0.11 14.14 16 3 H 0.00 0.28 6.89 -2.39 -0.02 0.26 16 4 C -0.54 -30.47 8.00 25.60 0.20 -30.27 16 5 H 0.06 3.25 7.22 -2.91 -0.02 3.23 16 6 C 0.02 0.87 5.24 84.65 0.44 1.31 16 7 N -0.92 -55.34 12.01 21.45 0.26 -55.08 16 8 Si 0.96 44.45 29.55 68.60 2.03 46.48 16 9 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 10 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 11 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 12 N -0.60 -25.66 2.75 -826.79 -2.28 -27.94 16 13 C 0.08 2.31 9.35 127.77 1.19 3.51 16 14 C 0.48 20.21 7.74 87.65 0.68 20.89 16 15 O -0.60 -32.07 15.76 -3.05 -0.05 -32.11 16 16 C 0.12 3.61 4.59 85.63 0.39 4.00 16 17 N -0.56 -16.48 2.45 -736.64 -1.80 -18.28 16 18 C 0.09 1.79 10.46 127.77 1.34 3.13 16 19 C 0.37 12.59 7.87 179.75 1.41 14.00 16 20 N -0.59 -22.30 9.79 -189.23 -1.85 -24.15 16 21 C 0.10 3.51 6.94 39.76 0.28 3.79 16 22 C -0.11 -3.33 10.10 22.73 0.23 -3.10 16 23 C -0.09 -1.83 9.99 22.14 0.22 -1.61 16 24 C -0.12 -2.12 10.05 22.26 0.22 -1.90 16 25 C -0.07 -1.42 10.06 22.39 0.23 -1.19 16 26 C -0.22 -6.48 6.52 22.89 0.15 -6.34 16 27 S 0.06 1.68 21.89 -56.49 -1.24 0.45 16 28 H 0.05 2.29 7.86 -2.39 -0.02 2.27 16 29 H 0.05 2.57 6.84 -2.39 -0.02 2.55 16 30 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 31 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 32 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.09 2.04 6.44 -2.39 -0.02 2.03 16 34 H 0.07 2.26 6.96 -2.39 -0.02 2.25 16 35 H 0.11 3.28 6.87 -2.39 -0.02 3.26 16 36 H 0.16 2.83 7.86 -2.39 -0.02 2.81 16 37 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.09 1.46 7.04 -2.38 -0.02 1.44 16 39 H 0.12 1.56 7.89 -2.39 -0.02 1.54 16 40 H 0.12 3.59 8.06 -2.91 -0.02 3.56 16 41 H 0.16 2.19 8.06 -2.91 -0.02 2.16 16 42 H 0.17 1.63 8.06 -2.91 -0.02 1.60 16 43 H 0.15 2.37 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -84.34 370.62 3.83 -80.52 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: 1.02 Total: 14.97 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: 7.74 Total: 15.16 kcal Atomic # 7 Polarization: -119.78 SS G_CDS: -5.68 Total: -125.46 kcal Atomic # 8 Polarization: -32.07 SS G_CDS: -0.05 Total: -32.11 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Atomic # 16 Polarization: 1.68 SS G_CDS: -1.24 Total: 0.45 kcal Total: -84.34 3.83 -80.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343700326.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.804 kcal (2) G-P(sol) polarization free energy of solvation -84.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds