Wall clock time and date at job start Tue Mar 31 2020 18:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08990 * 109.47081 * 2 1 4 4 O 1.42901 * 109.46782 * 240.00151 * 2 1 3 5 5 C 1.35950 * 117.00439 * 85.01014 * 4 2 1 6 6 C 1.38667 * 120.05886 * 354.50567 * 5 4 2 7 7 C 1.38187 * 119.96723 * 179.72493 * 6 5 4 8 8 C 1.38258 * 120.09334 * 0.55278 * 7 6 5 9 9 C 1.38254 * 120.13023 * 359.72450 * 8 7 6 10 10 C 1.38339 * 120.02686 * 359.97438 * 9 8 7 11 11 F 1.35098 * 120.04443 * 180.02562 * 10 9 8 12 12 C 1.50699 * 109.46793 * 120.00052 * 2 1 3 13 13 O 1.21303 * 119.99441 * 120.00061 * 12 2 1 14 14 N 1.34775 * 120.00130 * 299.99774 * 12 2 1 15 15 C 1.40155 * 119.99650 * 180.02562 * 14 12 2 16 16 C 1.40415 * 125.97851 * 359.97438 * 15 14 12 17 17 C 1.35238 * 107.86841 * 179.73912 * 16 15 14 18 18 N 1.34973 * 107.85831 * 0.39207 * 17 16 15 19 19 C 1.46498 * 125.96821 * 179.87436 * 18 17 16 20 20 C 1.50704 * 109.47243 * 124.71829 * 19 18 17 21 21 H 1.07999 * 119.99578 * 359.97438 * 20 19 18 22 22 C 1.37876 * 119.99930 * 179.97438 * 20 19 18 23 23 N 1.31512 * 120.00157 * 359.71739 * 22 20 19 24 24 Si 1.86800 * 119.99534 * 179.97438 * 22 20 19 25 25 H 1.48509 * 109.47036 * 179.72278 * 24 22 20 26 26 H 1.48501 * 109.47233 * 299.71939 * 24 22 20 27 27 H 1.48503 * 109.47482 * 59.72220 * 24 22 20 28 28 N 1.31220 * 125.96839 * 179.97438 * 15 14 12 29 29 H 1.09000 * 109.47093 * 300.00128 * 1 2 3 30 30 H 1.08999 * 109.47136 * 59.99623 * 1 2 3 31 31 H 1.09001 * 109.47509 * 179.97438 * 1 2 3 32 32 H 1.07999 * 120.01198 * 359.97438 * 6 5 4 33 33 H 1.07999 * 119.94699 * 180.27805 * 7 6 5 34 34 H 1.08004 * 119.93823 * 179.74559 * 8 7 6 35 35 H 1.08000 * 119.98866 * 179.97438 * 9 8 7 36 36 H 0.96995 * 120.00144 * 0.02562 * 14 12 2 37 37 H 1.07997 * 126.06369 * 0.02562 * 16 15 14 38 38 H 1.08000 * 126.06979 * 180.26839 * 17 16 15 39 39 H 1.09001 * 109.47720 * 4.70890 * 19 18 17 40 40 H 1.09005 * 109.46716 * 244.71181 * 19 18 17 41 41 H 0.96992 * 119.99862 * 0.28276 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.1126 0.0629 -2.3046 6 6 1.6598 1.3733 -2.3286 7 6 1.7741 2.1220 -3.4844 8 6 2.3289 1.5628 -4.6206 9 6 2.7764 0.2548 -4.6028 10 6 2.6703 -0.4975 -3.4467 11 9 3.1079 -1.7755 -3.4288 12 6 2.0322 -0.7104 1.2305 13 8 2.7296 -1.6967 1.1191 14 7 1.7067 -0.2500 2.4546 15 6 2.1743 -0.9105 3.5989 16 6 2.9849 -2.0569 3.6163 17 6 3.2204 -2.3789 4.9085 18 7 2.5783 -1.4792 5.6830 19 6 2.5655 -1.4584 7.1477 20 6 3.0406 -0.1139 7.6353 21 1 3.3241 0.6487 6.9250 22 6 3.1133 0.1426 8.9880 23 7 2.7628 -0.7841 9.8528 24 14 3.7029 1.8090 9.5922 25 1 3.6829 1.8326 11.0770 26 1 5.0876 2.0481 9.1120 27 1 2.8069 2.8710 9.0681 28 7 1.9310 -0.5655 4.8413 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.2218 1.8098 -1.4432 33 1 1.4254 3.1440 -3.5014 34 1 2.4133 2.1490 -5.5238 35 1 3.2091 -0.1799 -5.4918 36 1 1.1488 0.5385 2.5436 37 1 3.3582 -2.5848 2.7512 38 1 3.8150 -3.2098 5.2585 39 1 3.2266 -2.2372 7.5280 40 1 1.5511 -1.6366 7.5048 41 1 2.4570 -1.6494 9.5390 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344312389.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:31 Heat of formation + Delta-G solvation = -2.819371 kcal Electronic energy + Delta-G solvation = -27083.327336 eV Core-core repulsion = 22880.602519 eV Total energy + Delta-G solvation = -4202.724818 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.01668 -41.14401 -40.52443 -39.28159 -37.71303 -35.00497 -33.82509 -32.59200 -31.13437 -30.75806 -29.95340 -29.44140 -26.50736 -25.25198 -23.73944 -23.04271 -22.73670 -21.48937 -20.50473 -19.66284 -18.95879 -17.77287 -17.30537 -17.23090 -16.66934 -16.45555 -16.32933 -15.70147 -15.54485 -15.18681 -14.89515 -14.77967 -14.46941 -14.03306 -13.81305 -13.62537 -13.37515 -13.24240 -12.87283 -12.78822 -12.53104 -12.40095 -12.27690 -12.05969 -11.84015 -11.59150 -11.43859 -11.20421 -10.85324 -10.55636 -10.18911 -10.13049 -9.70970 -9.37521 -9.05006 -8.61876 -8.61545 -8.28987 -7.61071 -6.61462 -4.35767 0.68052 0.80983 2.02092 2.11621 2.75169 2.96531 3.13889 3.35388 3.36683 3.54065 3.55491 3.65079 3.85162 4.16573 4.26717 4.34931 4.38388 4.42446 4.45999 4.72684 4.78702 4.93238 5.11542 5.13017 5.16123 5.38806 5.50360 5.60287 5.61450 5.64141 5.72918 5.92901 6.06404 6.16834 6.34113 6.42122 6.53714 6.70164 6.83711 7.20284 7.38282 7.64246 7.77133 8.02649 8.29840 8.46218 8.57428 9.32422 10.76151 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.022589 B = 0.002109 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.221685 B =13271.313797 C =13889.792311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.073 3.927 3 H 0.106 0.894 4 O -0.275 6.275 5 C 0.100 3.900 6 C -0.187 4.187 7 C -0.089 4.089 8 C -0.130 4.130 9 C -0.117 4.117 10 C 0.073 3.927 11 F -0.129 7.129 12 C 0.523 3.477 13 O -0.489 6.489 14 N -0.624 5.624 15 C 0.258 3.742 16 C -0.285 4.285 17 C 0.053 3.947 18 N -0.316 5.316 19 C 0.249 3.751 20 C -0.608 4.608 21 H 0.063 0.937 22 C 0.023 3.977 23 N -0.904 5.904 24 Si 1.077 2.923 25 H -0.280 1.280 26 H -0.286 1.286 27 H -0.285 1.285 28 N -0.299 5.299 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.141 0.859 33 H 0.133 0.867 34 H 0.134 0.866 35 H 0.143 0.857 36 H 0.412 0.588 37 H 0.161 0.839 38 H 0.169 0.831 39 H 0.047 0.953 40 H 0.035 0.965 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.257 5.314 -27.683 28.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.013 3.987 3 H 0.123 0.877 4 O -0.187 6.187 5 C 0.053 3.947 6 C -0.205 4.205 7 C -0.107 4.107 8 C -0.149 4.149 9 C -0.135 4.135 10 C 0.053 3.947 11 F -0.107 7.107 12 C 0.306 3.694 13 O -0.360 6.360 14 N -0.274 5.274 15 C 0.005 3.995 16 C -0.316 4.316 17 C -0.097 4.097 18 N -0.097 5.097 19 C 0.131 3.869 20 C -0.647 4.647 21 H 0.081 0.919 22 C -0.182 4.182 23 N -0.539 5.539 24 Si 0.904 3.096 25 H -0.205 1.205 26 H -0.212 1.212 27 H -0.211 1.211 28 N -0.130 5.130 29 H 0.103 0.897 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.159 0.841 33 H 0.151 0.849 34 H 0.152 0.848 35 H 0.160 0.840 36 H 0.247 0.753 37 H 0.179 0.821 38 H 0.187 0.813 39 H 0.065 0.935 40 H 0.053 0.947 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.983 6.024 -25.469 26.474 hybrid contribution -0.163 -1.116 -1.728 2.063 sum -4.147 4.909 -27.197 27.946 Atomic orbital electron populations 1.22402 0.92006 1.05064 1.04243 1.22145 0.96020 0.97011 0.83569 0.87673 1.86275 1.80964 1.36196 1.15308 1.19083 0.97672 0.91410 0.86494 1.21268 1.05486 0.93008 1.00776 1.21040 0.97663 0.99967 0.92018 1.20959 1.00263 0.94500 0.99133 1.21068 1.01101 0.94804 0.96565 1.17031 1.03392 0.80983 0.93304 1.91539 1.87322 1.34946 1.96925 1.19907 0.81129 0.85207 0.83164 1.90714 1.35171 1.24564 1.85584 1.42196 1.51874 1.30852 1.02463 1.19016 0.99406 0.94671 0.86372 1.21549 1.10708 1.02041 0.97304 1.22578 0.99354 0.96761 0.91002 1.48809 1.35255 1.18090 1.07573 1.19787 0.98227 1.00039 0.68880 1.22089 1.49196 0.98493 0.94897 0.91851 1.25932 0.94646 1.05071 0.92555 1.70850 1.40443 1.05600 1.37001 0.83417 0.76365 0.73621 0.76218 1.20496 1.21226 1.21139 1.77348 1.22412 1.15563 0.97635 0.89704 0.90274 0.90163 0.84138 0.84867 0.84766 0.83960 0.75264 0.82118 0.81347 0.93535 0.94694 0.92259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.29 9.07 37.16 0.34 -0.96 16 2 C 0.07 0.73 2.64 -27.88 -0.07 0.65 16 3 H 0.11 0.76 6.31 -51.93 -0.33 0.43 16 4 O -0.28 -3.49 9.20 -39.49 -0.36 -3.85 16 5 C 0.10 1.05 6.61 -39.18 -0.26 0.79 16 6 C -0.19 -1.37 8.25 -39.44 -0.33 -1.70 16 7 C -0.09 -0.52 10.04 -39.59 -0.40 -0.91 16 8 C -0.13 -0.76 10.04 -39.57 -0.40 -1.16 16 9 C -0.12 -0.88 10.02 -39.54 -0.40 -1.28 16 10 C 0.07 0.78 7.31 -39.30 -0.29 0.49 16 11 F -0.13 -1.68 17.11 2.25 0.04 -1.64 16 12 C 0.52 7.48 7.20 -10.99 -0.08 7.40 16 13 O -0.49 -9.03 13.63 -14.37 -0.20 -9.22 16 14 N -0.62 -9.13 5.34 -11.13 -0.06 -9.19 16 15 C 0.26 5.08 8.11 -154.39 -1.25 3.83 16 16 C -0.28 -5.65 9.61 -39.83 -0.38 -6.03 16 17 C 0.05 1.05 11.44 -17.24 -0.20 0.85 16 18 N -0.32 -7.29 3.67 -62.56 -0.23 -7.52 16 19 C 0.25 6.23 5.57 -5.19 -0.03 6.20 16 20 C -0.61 -16.93 9.24 -34.44 -0.32 -17.25 16 21 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 22 C 0.02 0.63 5.46 -17.82 -0.10 0.53 16 23 N -0.90 -26.10 13.65 55.43 0.76 -25.34 16 24 Si 1.08 24.64 29.90 -169.99 -5.08 19.56 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 26 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 27 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 28 N -0.30 -6.76 12.42 31.44 0.39 -6.37 16 29 H 0.08 0.46 7.56 -51.93 -0.39 0.07 16 30 H 0.08 0.44 6.91 -51.93 -0.36 0.08 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.14 0.72 5.43 -52.49 -0.28 0.44 16 33 H 0.13 0.44 8.06 -52.49 -0.42 0.01 16 34 H 0.13 0.44 8.06 -52.48 -0.42 0.01 16 35 H 0.14 0.78 8.06 -52.49 -0.42 0.35 16 36 H 0.41 4.57 8.24 -40.82 -0.34 4.24 16 37 H 0.16 3.14 5.92 -52.49 -0.31 2.83 16 38 H 0.17 2.74 8.06 -52.49 -0.42 2.32 16 39 H 0.05 1.13 7.94 -51.93 -0.41 0.71 16 40 H 0.04 0.91 8.00 -51.93 -0.42 0.49 16 41 H 0.27 7.54 7.22 -40.82 -0.29 7.25 16 LS Contribution 358.57 15.07 5.40 5.40 Total: -1.00 -35.56 358.57 -7.95 -43.51 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -4.45 Total: 3.19 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: -4.15 Total: -8.53 kcal Atomic # 7 Polarization: -49.28 SS G_CDS: 0.86 Total: -48.42 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: -0.56 Total: -13.07 kcal Atomic # 9 Polarization: -1.68 SS G_CDS: 0.04 Total: -1.64 kcal Atomic # 14 Polarization: 24.64 SS G_CDS: -5.08 Total: 19.56 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.56 -7.95 -43.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344312389.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.692 kcal (2) G-P(sol) polarization free energy of solvation -35.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds