Wall clock time and date at job start Tue Mar 31 2020 18:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08990 * 109.47081 * 2 1 4 4 O 1.42901 * 109.46782 * 240.00151 * 2 1 3 5 5 C 1.35950 * 117.00439 * 85.01014 * 4 2 1 6 6 C 1.38667 * 120.05886 * 354.50567 * 5 4 2 7 7 C 1.38187 * 119.96723 * 179.72493 * 6 5 4 8 8 C 1.38258 * 120.09334 * 0.55278 * 7 6 5 9 9 C 1.38254 * 120.13023 * 359.72450 * 8 7 6 10 10 C 1.38339 * 120.02686 * 359.97438 * 9 8 7 11 11 F 1.35098 * 120.04443 * 180.02562 * 10 9 8 12 12 C 1.50699 * 109.46793 * 120.00052 * 2 1 3 13 13 O 1.21303 * 119.99441 * 120.00061 * 12 2 1 14 14 N 1.34775 * 120.00130 * 299.99774 * 12 2 1 15 15 C 1.40155 * 119.99650 * 180.02562 * 14 12 2 16 16 C 1.40415 * 125.97851 * 359.97438 * 15 14 12 17 17 C 1.35238 * 107.86841 * 179.73912 * 16 15 14 18 18 N 1.34973 * 107.85831 * 0.39207 * 17 16 15 19 19 C 1.46498 * 125.96821 * 179.87436 * 18 17 16 20 20 C 1.50704 * 109.47243 * 124.71829 * 19 18 17 21 21 H 1.07999 * 119.99578 * 359.97438 * 20 19 18 22 22 C 1.37876 * 119.99930 * 179.97438 * 20 19 18 23 23 N 1.31512 * 120.00157 * 359.71739 * 22 20 19 24 24 Si 1.86800 * 119.99534 * 179.97438 * 22 20 19 25 25 H 1.48509 * 109.47036 * 179.72278 * 24 22 20 26 26 H 1.48501 * 109.47233 * 299.71939 * 24 22 20 27 27 H 1.48503 * 109.47482 * 59.72220 * 24 22 20 28 28 N 1.31220 * 125.96839 * 179.97438 * 15 14 12 29 29 H 1.09000 * 109.47093 * 300.00128 * 1 2 3 30 30 H 1.08999 * 109.47136 * 59.99623 * 1 2 3 31 31 H 1.09001 * 109.47509 * 179.97438 * 1 2 3 32 32 H 1.07999 * 120.01198 * 359.97438 * 6 5 4 33 33 H 1.07999 * 119.94699 * 180.27805 * 7 6 5 34 34 H 1.08004 * 119.93823 * 179.74559 * 8 7 6 35 35 H 1.08000 * 119.98866 * 179.97438 * 9 8 7 36 36 H 0.96995 * 120.00144 * 0.02562 * 14 12 2 37 37 H 1.07997 * 126.06369 * 0.02562 * 16 15 14 38 38 H 1.08000 * 126.06979 * 180.26839 * 17 16 15 39 39 H 1.09001 * 109.47720 * 4.70890 * 19 18 17 40 40 H 1.09005 * 109.46716 * 244.71181 * 19 18 17 41 41 H 0.96992 * 119.99862 * 0.28276 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.1126 0.0629 -2.3046 6 6 1.6598 1.3733 -2.3286 7 6 1.7741 2.1220 -3.4844 8 6 2.3289 1.5628 -4.6206 9 6 2.7764 0.2548 -4.6028 10 6 2.6703 -0.4975 -3.4467 11 9 3.1079 -1.7755 -3.4288 12 6 2.0322 -0.7104 1.2305 13 8 2.7296 -1.6967 1.1191 14 7 1.7067 -0.2500 2.4546 15 6 2.1743 -0.9105 3.5989 16 6 2.9849 -2.0569 3.6163 17 6 3.2204 -2.3789 4.9085 18 7 2.5783 -1.4792 5.6830 19 6 2.5655 -1.4584 7.1477 20 6 3.0406 -0.1139 7.6353 21 1 3.3241 0.6487 6.9250 22 6 3.1133 0.1426 8.9880 23 7 2.7628 -0.7841 9.8528 24 14 3.7029 1.8090 9.5922 25 1 3.6829 1.8326 11.0770 26 1 5.0876 2.0481 9.1120 27 1 2.8069 2.8710 9.0681 28 7 1.9310 -0.5655 4.8413 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.2218 1.8098 -1.4432 33 1 1.4254 3.1440 -3.5014 34 1 2.4133 2.1490 -5.5238 35 1 3.2091 -0.1799 -5.4918 36 1 1.1488 0.5385 2.5436 37 1 3.3582 -2.5848 2.7512 38 1 3.8150 -3.2098 5.2585 39 1 3.2266 -2.2372 7.5280 40 1 1.5511 -1.6366 7.5048 41 1 2.4570 -1.6494 9.5390 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344312389.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:30 Heat of formation + Delta-G solvation = -24.829841 kcal Electronic energy + Delta-G solvation = -27084.281782 eV Core-core repulsion = 22880.602519 eV Total energy + Delta-G solvation = -4203.679263 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.84476 -42.45226 -41.60457 -40.36278 -38.43242 -36.51302 -35.66287 -33.61607 -32.35000 -31.64413 -31.08829 -30.55976 -28.29592 -26.23064 -25.10438 -24.19022 -23.50900 -22.73089 -21.98449 -20.98680 -19.68744 -19.26688 -18.81834 -18.04776 -18.01193 -17.38986 -17.16985 -16.91031 -16.70076 -16.17357 -15.89806 -15.69464 -15.60221 -15.45047 -15.41899 -15.04085 -14.35565 -14.17004 -14.04694 -13.95164 -13.79098 -13.51599 -13.29805 -13.23441 -12.96208 -12.63973 -12.60986 -12.24558 -12.10292 -12.01976 -11.95611 -11.71837 -11.03694 -10.97190 -10.70049 -9.93676 -9.91168 -9.29563 -9.26454 -8.78995 -6.56815 0.12722 0.23486 0.74093 0.95527 1.25490 1.51435 1.57665 1.77526 1.81990 2.04816 2.37244 2.49090 2.60573 3.00573 3.21129 3.24110 3.57193 3.73016 3.77969 3.83072 3.94804 4.08424 4.23913 4.33715 4.42403 4.52269 4.57906 4.63516 4.65111 4.75606 4.76654 4.96347 4.99968 5.08257 5.09895 5.26659 5.43539 5.52980 5.65256 5.73607 5.88105 6.05223 6.21758 6.23536 6.39117 6.79443 6.93840 7.18887 8.57735 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.022589 B = 0.002109 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.221685 B =13271.313797 C =13889.792311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.080 3.920 3 H 0.140 0.860 4 O -0.312 6.312 5 C 0.074 3.926 6 C -0.185 4.185 7 C -0.081 4.081 8 C -0.123 4.123 9 C -0.118 4.118 10 C 0.029 3.971 11 F -0.156 7.156 12 C 0.521 3.479 13 O -0.535 6.535 14 N -0.612 5.612 15 C 0.268 3.732 16 C -0.295 4.295 17 C 0.058 3.942 18 N -0.341 5.341 19 C 0.259 3.741 20 C -0.621 4.621 21 H 0.047 0.953 22 C -0.020 4.020 23 N -0.923 5.923 24 Si 1.120 2.880 25 H -0.276 1.276 26 H -0.272 1.272 27 H -0.273 1.273 28 N -0.336 5.336 29 H 0.107 0.893 30 H 0.102 0.898 31 H 0.061 0.939 32 H 0.165 0.835 33 H 0.169 0.831 34 H 0.167 0.833 35 H 0.157 0.843 36 H 0.430 0.570 37 H 0.164 0.836 38 H 0.201 0.799 39 H 0.054 0.946 40 H 0.019 0.981 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.766 8.264 -29.542 31.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.021 3.979 3 H 0.157 0.843 4 O -0.225 6.225 5 C 0.029 3.971 6 C -0.203 4.203 7 C -0.099 4.099 8 C -0.141 4.141 9 C -0.137 4.137 10 C 0.010 3.990 11 F -0.135 7.135 12 C 0.308 3.692 13 O -0.409 6.409 14 N -0.264 5.264 15 C 0.014 3.986 16 C -0.326 4.326 17 C -0.091 4.091 18 N -0.123 5.123 19 C 0.139 3.861 20 C -0.659 4.659 21 H 0.065 0.935 22 C -0.219 4.219 23 N -0.559 5.559 24 Si 0.941 3.059 25 H -0.201 1.201 26 H -0.197 1.197 27 H -0.198 1.198 28 N -0.167 5.167 29 H 0.125 0.875 30 H 0.121 0.879 31 H 0.080 0.920 32 H 0.182 0.818 33 H 0.186 0.814 34 H 0.185 0.815 35 H 0.174 0.826 36 H 0.269 0.731 37 H 0.181 0.819 38 H 0.218 0.782 39 H 0.071 0.929 40 H 0.037 0.963 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.518 8.986 -27.372 29.161 hybrid contribution -0.015 -2.031 -1.360 2.444 sum -4.533 6.956 -28.732 29.907 Atomic orbital electron populations 1.22441 0.89599 1.04644 1.06499 1.22261 0.97515 0.97276 0.80840 0.84281 1.86210 1.81883 1.37977 1.16446 1.19365 0.99319 0.92752 0.85697 1.21588 1.04752 0.91584 1.02409 1.21527 0.96025 1.01227 0.91082 1.21416 0.98526 0.93674 1.00504 1.21357 1.00831 0.95493 0.95975 1.17629 1.05645 0.80662 0.95098 1.91456 1.87992 1.36845 1.97164 1.20877 0.79797 0.84592 0.83978 1.90686 1.37221 1.26768 1.86215 1.42279 1.51770 1.31096 1.01246 1.19351 0.98026 0.94331 0.86932 1.21719 1.11081 1.02446 0.97349 1.23156 0.98444 0.96675 0.90784 1.48602 1.37116 1.19549 1.07013 1.19458 0.97147 0.99022 0.70438 1.22272 1.49346 0.99349 0.94944 0.93512 1.27298 0.94060 1.07683 0.92901 1.70946 1.41732 1.05859 1.37336 0.82876 0.76863 0.70172 0.76002 1.20097 1.19715 1.19818 1.77268 1.24034 1.16739 0.98635 0.87479 0.87883 0.91985 0.81754 0.81366 0.81534 0.82551 0.73128 0.81872 0.78171 0.92868 0.96338 0.92984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.11 9.07 71.98 0.65 -1.46 16 2 C 0.08 1.48 2.64 29.85 0.08 1.56 16 3 H 0.14 1.57 6.31 -2.39 -0.02 1.55 16 4 O -0.31 -7.91 9.20 -73.96 -0.68 -8.59 16 5 C 0.07 1.51 6.61 22.53 0.15 1.66 16 6 C -0.19 -2.14 8.25 22.36 0.18 -1.96 16 7 C -0.08 -0.60 10.04 22.26 0.22 -0.37 16 8 C -0.12 -1.00 10.04 22.28 0.22 -0.78 16 9 C -0.12 -1.62 10.02 22.30 0.22 -1.40 16 10 C 0.03 0.64 7.31 22.45 0.16 0.80 16 11 F -0.16 -4.39 17.11 44.97 0.77 -3.62 16 12 C 0.52 14.70 7.20 87.66 0.63 15.33 16 13 O -0.54 -20.19 13.63 15.93 0.22 -19.97 16 14 N -0.61 -17.38 5.34 -307.50 -1.64 -19.02 16 15 C 0.27 10.54 8.11 133.33 1.08 11.62 16 16 C -0.29 -11.77 9.61 22.11 0.21 -11.56 16 17 C 0.06 2.30 11.44 83.52 0.96 3.25 16 18 N -0.34 -15.96 3.67 -351.83 -1.29 -17.25 16 19 C 0.26 13.21 5.57 85.63 0.48 13.69 16 20 C -0.62 -34.97 9.24 25.60 0.24 -34.73 16 21 H 0.05 2.74 7.81 -2.91 -0.02 2.72 16 22 C -0.02 -1.09 5.46 84.65 0.46 -0.63 16 23 N -0.92 -53.62 13.65 21.45 0.29 -53.32 16 24 Si 1.12 49.03 29.90 68.60 2.05 51.08 16 25 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 26 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 27 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 28 N -0.34 -15.35 12.42 -54.45 -0.68 -16.02 16 29 H 0.11 0.81 7.56 -2.39 -0.02 0.79 16 30 H 0.10 0.79 6.91 -2.39 -0.02 0.77 16 31 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.17 0.96 5.43 -2.91 -0.02 0.95 16 33 H 0.17 0.10 8.06 -2.91 -0.02 0.08 16 34 H 0.17 0.27 8.06 -2.91 -0.02 0.25 16 35 H 0.16 1.53 8.06 -2.91 -0.02 1.51 16 36 H 0.43 8.79 8.24 -92.71 -0.76 8.02 16 37 H 0.16 6.49 5.92 -2.91 -0.02 6.47 16 38 H 0.20 6.35 8.06 -2.91 -0.02 6.33 16 39 H 0.05 2.62 7.94 -2.39 -0.02 2.60 16 40 H 0.02 1.00 8.00 -2.38 -0.02 0.98 16 41 H 0.26 14.99 7.22 -92.71 -0.67 14.32 16 Total: -1.00 -81.03 358.57 5.43 -75.60 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: 0.43 Total: 16.08 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: 5.95 Total: -4.97 kcal Atomic # 7 Polarization: -102.30 SS G_CDS: -3.32 Total: -105.62 kcal Atomic # 8 Polarization: -28.10 SS G_CDS: -0.46 Total: -28.56 kcal Atomic # 9 Polarization: -4.39 SS G_CDS: 0.77 Total: -3.62 kcal Atomic # 14 Polarization: 49.03 SS G_CDS: 2.05 Total: 51.08 kcal Total: -81.03 5.43 -75.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344312389.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.775 kcal (2) G-P(sol) polarization free energy of solvation -81.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds