Wall clock time and date at job start Tue Mar 31 2020 16:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31133 * 126.54916 * 2 1 4 4 C 1.34494 * 105.61502 * 180.02562 * 3 2 1 5 5 C 1.50701 * 126.28872 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.47007 * 14.98609 * 5 4 3 7 7 N 1.46497 * 109.47133 * 134.99478 * 5 4 3 8 8 C 1.34777 * 119.99525 * 204.99448 * 7 5 4 9 9 O 1.21283 * 120.00463 * 0.02562 * 8 7 5 10 10 C 1.50700 * 119.99675 * 179.72583 * 8 7 5 11 11 C 1.53004 * 109.47208 * 180.27843 * 10 8 7 12 12 C 1.50700 * 109.47208 * 180.02562 * 11 10 8 13 13 H 1.08002 * 119.99770 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99720 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99854 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 120.00129 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47118 * 90.00195 * 16 14 12 18 18 H 1.48507 * 109.46904 * 209.99852 * 16 14 12 19 19 H 1.48494 * 109.47201 * 330.00027 * 16 14 12 20 20 C 1.50707 * 109.46448 * 254.99329 * 5 4 3 21 21 C 1.38216 * 120.01190 * 264.71909 * 20 5 4 22 22 C 1.38225 * 120.02700 * 179.72448 * 21 20 5 23 23 C 1.38275 * 120.04581 * 0.56083 * 22 21 20 24 24 C 1.38172 * 120.02555 * 359.71717 * 23 22 21 25 25 C 1.38437 * 120.01274 * 85.00478 * 20 5 4 26 26 F 1.35098 * 120.02490 * 0.02562 * 25 20 5 27 27 N 1.29946 * 107.42303 * 0.23588 * 4 3 2 28 28 O 1.21304 * 110.25054 * 359.58282 * 27 4 3 29 29 H 1.09005 * 109.46874 * 90.00598 * 1 2 3 30 30 H 1.08997 * 109.46979 * 210.00420 * 1 2 3 31 31 H 1.09002 * 109.47424 * 330.00744 * 1 2 3 32 32 H 0.97000 * 120.00580 * 25.00194 * 7 5 4 33 33 H 1.09009 * 109.47352 * 300.27556 * 10 8 7 34 34 H 1.08998 * 109.47585 * 60.27844 * 10 8 7 35 35 H 1.09000 * 109.46887 * 300.00372 * 11 10 8 36 36 H 1.08998 * 109.46846 * 59.99549 * 11 10 8 37 37 H 0.96999 * 120.00128 * 179.97438 * 15 14 12 38 38 H 1.08002 * 119.98993 * 0.02562 * 21 20 5 39 39 H 1.07994 * 119.97909 * 180.27922 * 22 21 20 40 40 H 1.07998 * 119.98762 * 179.74944 * 23 22 21 41 41 H 1.08000 * 120.00984 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2879 1.0534 0.0000 4 6 3.5441 0.5729 -0.0006 5 6 4.8112 1.3888 -0.0014 6 1 4.5793 2.4202 0.2643 7 7 5.7509 0.8322 0.9750 8 6 6.6980 1.6191 1.5229 9 8 6.7720 2.7880 1.2081 10 6 7.6609 1.0481 2.5319 11 6 8.6207 2.1446 2.9982 12 6 9.5840 1.5735 4.0067 13 1 9.5178 0.5326 4.2873 14 6 10.5496 2.3797 4.5711 15 7 11.3899 1.8814 5.4516 16 14 10.6635 4.1801 4.0862 17 1 9.8105 4.9914 4.9913 18 1 12.0732 4.6340 4.1957 19 1 10.1973 4.3460 2.6861 20 6 5.4319 1.3511 -1.3742 21 6 6.4221 0.4302 -1.6601 22 6 6.9877 0.3916 -2.9208 23 6 6.5716 1.2817 -3.8937 24 6 5.5858 2.2069 -3.6084 25 6 5.0146 2.2427 -2.3475 26 9 4.0511 3.1473 -2.0672 27 7 3.4645 -0.7241 -0.0060 28 8 2.3029 -1.0735 -0.0004 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3634 0.8901 0.5137 32 1 5.6917 -0.1026 1.2270 33 1 7.1052 0.6638 3.3874 34 1 8.2291 0.2384 2.0742 35 1 9.1763 2.5290 2.1428 36 1 8.0525 2.9543 3.4559 37 1 12.0695 2.4485 5.8483 38 1 6.7508 -0.2627 -0.8996 39 1 7.7582 -0.3312 -3.1447 40 1 7.0170 1.2533 -4.8772 41 1 5.2608 2.9017 -4.3687 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360367970.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:59:31 Heat of formation + Delta-G solvation = 11.805675 kcal Electronic energy + Delta-G solvation = -28132.167257 eV Core-core repulsion = 23930.076629 eV Total energy + Delta-G solvation = -4202.090628 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 4.73 seconds Orbital eigenvalues (eV) -49.01012 -45.93695 -40.09444 -38.77521 -36.63431 -35.24869 -33.51848 -33.39053 -31.77721 -31.01950 -30.72954 -29.26630 -27.75168 -25.78629 -24.14836 -22.93239 -22.74151 -21.78255 -20.62245 -19.89028 -18.53718 -17.98254 -17.85421 -17.15706 -16.79943 -16.36134 -16.11559 -15.75170 -15.57613 -15.01690 -14.89053 -14.41076 -14.16536 -14.01983 -13.89690 -13.74580 -13.43934 -13.32393 -13.13313 -12.60481 -12.55311 -12.48082 -12.32974 -12.14863 -11.71162 -11.44650 -11.36436 -11.29901 -10.97711 -10.28571 -10.20150 -10.07911 -9.80349 -9.41260 -9.33316 -9.19834 -9.13386 -8.86494 -8.51486 -6.03782 -4.02802 0.77256 0.90816 1.01242 1.84374 2.47912 2.88768 2.94940 3.24797 3.37942 3.44560 3.55534 3.58588 3.74227 4.08521 4.35063 4.50469 4.55802 4.60578 4.74654 4.80067 4.81778 5.03912 5.06228 5.10089 5.22437 5.31700 5.38910 5.47405 5.59855 5.67800 5.83265 5.87307 6.01416 6.03647 6.06374 6.17817 6.34406 6.62916 6.65870 7.33692 7.40672 7.55045 7.76981 7.82820 8.43518 8.53526 8.98847 9.59096 11.08973 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012088 B = 0.003328 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2315.807666 B = 8412.694856 C = 9607.611230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.178 3.822 3 N -0.467 5.467 4 C 0.172 3.828 5 C 0.284 3.716 6 H 0.128 0.872 7 N -0.734 5.734 8 C 0.515 3.485 9 O -0.526 6.526 10 C -0.119 4.119 11 C 0.002 3.998 12 C -0.525 4.525 13 H 0.073 0.927 14 C 0.070 3.930 15 N -0.903 5.903 16 Si 0.877 3.123 17 H -0.276 1.276 18 H -0.288 1.288 19 H -0.261 1.261 20 C -0.134 4.134 21 C -0.063 4.063 22 C -0.131 4.131 23 C -0.086 4.086 24 C -0.158 4.158 25 C 0.118 3.882 26 F -0.131 7.131 27 N -0.369 5.369 28 O 0.083 5.917 29 H 0.102 0.898 30 H 0.099 0.901 31 H 0.106 0.894 32 H 0.405 0.595 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.025 0.975 36 H 0.020 0.980 37 H 0.263 0.737 38 H 0.134 0.866 39 H 0.133 0.867 40 H 0.134 0.866 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.937 -6.968 -18.709 29.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.043 4.043 3 N -0.201 5.201 4 C -0.102 4.102 5 C 0.177 3.823 6 H 0.145 0.855 7 N -0.389 5.389 8 C 0.304 3.696 9 O -0.400 6.400 10 C -0.159 4.159 11 C -0.036 4.036 12 C -0.563 4.563 13 H 0.091 0.909 14 C -0.132 4.132 15 N -0.542 5.542 16 Si 0.704 3.296 17 H -0.202 1.202 18 H -0.214 1.214 19 H -0.185 1.185 20 C -0.137 4.137 21 C -0.081 4.081 22 C -0.149 4.149 23 C -0.104 4.104 24 C -0.177 4.177 25 C 0.098 3.902 26 F -0.109 7.109 27 N -0.075 5.075 28 O 0.021 5.979 29 H 0.120 0.880 30 H 0.117 0.883 31 H 0.125 0.875 32 H 0.240 0.760 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.043 0.957 36 H 0.038 0.962 37 H 0.073 0.927 38 H 0.152 0.848 39 H 0.151 0.849 40 H 0.152 0.848 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -20.943 -6.087 -18.778 28.779 hybrid contribution -0.212 0.608 -0.002 0.644 sum -21.155 -5.479 -18.780 28.814 Atomic orbital electron populations 1.20419 0.79952 1.06081 1.05502 1.28900 0.99015 0.80487 0.95848 1.71908 0.99734 1.28796 1.19693 1.25518 0.94886 0.88274 1.01529 1.17424 0.80906 0.97453 0.86539 0.85470 1.46208 1.33610 1.14629 1.44491 1.21706 0.80340 0.86334 0.81201 1.90687 1.71029 1.16871 1.61420 1.21695 0.96265 1.01907 0.96029 1.19385 0.93885 0.93440 0.96910 1.21086 1.13900 0.98436 1.22889 0.90895 1.24963 0.95172 0.98603 0.94436 1.69909 1.19027 1.36388 1.28854 0.86807 0.77041 0.85497 0.80294 1.20210 1.21412 1.18505 1.19989 1.00520 0.98478 0.94728 1.20914 0.93759 0.96457 0.96966 1.21229 1.00662 0.99951 0.93055 1.21066 0.95507 0.94054 0.99762 1.21117 0.99340 1.01795 0.95452 1.17489 0.89382 0.89259 0.94081 1.91527 1.60492 1.64836 1.94084 1.74582 0.97547 1.15214 1.20134 1.85297 1.11334 1.35749 1.65479 0.87969 0.88257 0.87539 0.75954 0.89352 0.89278 0.95700 0.96188 0.92691 0.84780 0.84933 0.84847 0.84526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.21 10.51 36.01 0.38 0.17 16 2 C 0.18 1.61 8.51 -13.06 -0.11 1.49 16 3 N -0.47 -5.90 11.55 -9.87 -0.11 -6.02 16 4 C 0.17 2.32 6.99 -156.37 -1.09 1.23 16 5 C 0.28 4.22 2.50 -70.23 -0.18 4.04 16 6 H 0.13 2.16 7.23 -51.93 -0.38 1.78 16 7 N -0.73 -10.81 3.80 -56.06 -0.21 -11.02 16 8 C 0.52 9.52 7.79 -10.98 -0.09 9.44 16 9 O -0.53 -11.76 15.64 5.55 0.09 -11.67 16 10 C -0.12 -2.31 5.64 -27.88 -0.16 -2.46 16 11 C 0.00 0.04 3.33 -27.88 -0.09 -0.05 16 12 C -0.53 -15.03 9.66 -34.44 -0.33 -15.36 16 13 H 0.07 2.17 7.99 -52.49 -0.42 1.76 16 14 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 15 N -0.90 -28.06 13.96 55.43 0.77 -27.28 16 16 Si 0.88 22.72 27.47 -169.99 -4.67 18.05 16 17 H -0.28 -7.07 7.11 56.52 0.40 -6.66 16 18 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 19 H -0.26 -6.73 6.54 56.52 0.37 -6.36 16 20 C -0.13 -1.90 5.01 -104.55 -0.52 -2.43 16 21 C -0.06 -0.80 9.32 -39.59 -0.37 -1.16 16 22 C -0.13 -1.39 10.05 -39.57 -0.40 -1.79 16 23 C -0.09 -0.84 10.04 -39.59 -0.40 -1.24 16 24 C -0.16 -1.77 10.03 -39.52 -0.40 -2.17 16 25 C 0.12 1.63 7.24 -39.42 -0.29 1.35 16 26 F -0.13 -1.93 16.57 2.25 0.04 -1.89 16 27 N -0.37 -4.61 11.87 30.90 0.37 -4.24 16 28 O 0.08 0.85 11.31 18.12 0.20 1.06 16 29 H 0.10 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.10 0.12 8.14 -51.93 -0.42 -0.30 16 31 H 0.11 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.41 5.08 8.36 -40.82 -0.34 4.73 16 33 H 0.09 1.59 8.14 -51.92 -0.42 1.16 16 34 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16 35 H 0.02 0.65 7.16 -51.93 -0.37 0.27 16 36 H 0.02 0.51 7.53 -51.93 -0.39 0.12 16 37 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 38 H 0.13 1.60 7.26 -52.49 -0.38 1.21 16 39 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 40 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 41 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 363.71 15.07 5.48 5.48 Total: -1.00 -36.62 363.71 -7.01 -43.63 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -4.83 Total: 0.88 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: -4.14 Total: -6.97 kcal Atomic # 7 Polarization: -49.38 SS G_CDS: 0.81 Total: -48.56 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.29 Total: -10.61 kcal Atomic # 9 Polarization: -1.93 SS G_CDS: 0.04 Total: -1.89 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -4.67 Total: 18.05 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -36.62 -7.01 -43.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360367970.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.434 kcal (2) G-P(sol) polarization free energy of solvation -36.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.73 seconds