Wall clock time and date at job start Tue Mar 31 2020 16:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31133 * 126.54916 * 2 1 4 4 C 1.34494 * 105.61502 * 180.02562 * 3 2 1 5 5 C 1.50701 * 126.28872 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.47007 * 14.98609 * 5 4 3 7 7 N 1.46497 * 109.47133 * 134.99478 * 5 4 3 8 8 C 1.34777 * 119.99525 * 204.99448 * 7 5 4 9 9 O 1.21283 * 120.00463 * 0.02562 * 8 7 5 10 10 C 1.50700 * 119.99675 * 179.72583 * 8 7 5 11 11 C 1.53004 * 109.47208 * 180.27843 * 10 8 7 12 12 C 1.50700 * 109.47208 * 180.02562 * 11 10 8 13 13 H 1.08002 * 119.99770 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99720 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99854 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 120.00129 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47118 * 90.00195 * 16 14 12 18 18 H 1.48507 * 109.46904 * 209.99852 * 16 14 12 19 19 H 1.48494 * 109.47201 * 330.00027 * 16 14 12 20 20 C 1.50707 * 109.46448 * 254.99329 * 5 4 3 21 21 C 1.38216 * 120.01190 * 264.71909 * 20 5 4 22 22 C 1.38225 * 120.02700 * 179.72448 * 21 20 5 23 23 C 1.38275 * 120.04581 * 0.56083 * 22 21 20 24 24 C 1.38172 * 120.02555 * 359.71717 * 23 22 21 25 25 C 1.38437 * 120.01274 * 85.00478 * 20 5 4 26 26 F 1.35098 * 120.02490 * 0.02562 * 25 20 5 27 27 N 1.29946 * 107.42303 * 0.23588 * 4 3 2 28 28 O 1.21304 * 110.25054 * 359.58282 * 27 4 3 29 29 H 1.09005 * 109.46874 * 90.00598 * 1 2 3 30 30 H 1.08997 * 109.46979 * 210.00420 * 1 2 3 31 31 H 1.09002 * 109.47424 * 330.00744 * 1 2 3 32 32 H 0.97000 * 120.00580 * 25.00194 * 7 5 4 33 33 H 1.09009 * 109.47352 * 300.27556 * 10 8 7 34 34 H 1.08998 * 109.47585 * 60.27844 * 10 8 7 35 35 H 1.09000 * 109.46887 * 300.00372 * 11 10 8 36 36 H 1.08998 * 109.46846 * 59.99549 * 11 10 8 37 37 H 0.96999 * 120.00128 * 179.97438 * 15 14 12 38 38 H 1.08002 * 119.98993 * 0.02562 * 21 20 5 39 39 H 1.07994 * 119.97909 * 180.27922 * 22 21 20 40 40 H 1.07998 * 119.98762 * 179.74944 * 23 22 21 41 41 H 1.08000 * 120.00984 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2879 1.0534 0.0000 4 6 3.5441 0.5729 -0.0006 5 6 4.8112 1.3888 -0.0014 6 1 4.5793 2.4202 0.2643 7 7 5.7509 0.8322 0.9750 8 6 6.6980 1.6191 1.5229 9 8 6.7720 2.7880 1.2081 10 6 7.6609 1.0481 2.5319 11 6 8.6207 2.1446 2.9982 12 6 9.5840 1.5735 4.0067 13 1 9.5178 0.5326 4.2873 14 6 10.5496 2.3797 4.5711 15 7 11.3899 1.8814 5.4516 16 14 10.6635 4.1801 4.0862 17 1 9.8105 4.9914 4.9913 18 1 12.0732 4.6340 4.1957 19 1 10.1973 4.3460 2.6861 20 6 5.4319 1.3511 -1.3742 21 6 6.4221 0.4302 -1.6601 22 6 6.9877 0.3916 -2.9208 23 6 6.5716 1.2817 -3.8937 24 6 5.5858 2.2069 -3.6084 25 6 5.0146 2.2427 -2.3475 26 9 4.0511 3.1473 -2.0672 27 7 3.4645 -0.7241 -0.0060 28 8 2.3029 -1.0735 -0.0004 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3634 0.8901 0.5137 32 1 5.6917 -0.1026 1.2270 33 1 7.1052 0.6638 3.3874 34 1 8.2291 0.2384 2.0742 35 1 9.1763 2.5290 2.1428 36 1 8.0525 2.9543 3.4559 37 1 12.0695 2.4485 5.8483 38 1 6.7508 -0.2627 -0.8996 39 1 7.7582 -0.3312 -3.1447 40 1 7.0170 1.2533 -4.8772 41 1 5.2608 2.9017 -4.3687 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360367970.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:59:27 Heat of formation + Delta-G solvation = -14.106861 kcal Electronic energy + Delta-G solvation = -28133.290909 eV Core-core repulsion = 23930.076629 eV Total energy + Delta-G solvation = -4203.214280 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.05068 -46.81404 -41.35839 -39.90410 -37.64716 -36.28571 -35.57510 -34.28769 -33.45645 -32.40882 -31.61825 -29.82633 -29.03867 -27.49294 -25.04718 -23.99481 -23.57523 -23.31299 -21.83391 -21.38770 -19.43898 -19.39745 -18.80504 -18.67672 -17.86835 -17.69447 -17.35547 -16.86846 -16.64451 -16.42968 -16.23875 -15.65329 -15.27282 -15.20863 -14.95938 -14.78050 -14.57478 -14.24416 -14.21416 -14.16710 -13.97409 -13.45721 -13.27368 -13.05335 -13.00468 -12.94245 -12.59350 -12.25510 -12.20391 -12.14638 -12.00791 -11.80398 -11.43131 -11.17153 -10.91620 -10.80064 -10.60806 -10.09226 -9.79309 -8.32955 -6.35866 -0.09153 0.05747 0.12746 0.93075 1.31854 1.33939 1.47879 1.48885 1.72952 1.82165 2.29330 2.33437 2.63859 2.90375 3.02804 3.15875 3.35467 3.63331 3.70587 3.85549 3.94860 4.14986 4.26375 4.29255 4.35847 4.37722 4.42422 4.57779 4.63989 4.74423 4.86416 4.90599 4.94982 4.96120 5.08962 5.11403 5.24884 5.32080 5.34019 5.39994 5.58266 5.80085 6.19445 6.27478 6.70000 6.97841 7.06076 7.29471 8.82672 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012088 B = 0.003328 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2315.807666 B = 8412.694856 C = 9607.611230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.195 3.805 3 N -0.505 5.505 4 C 0.157 3.843 5 C 0.289 3.711 6 H 0.097 0.903 7 N -0.713 5.713 8 C 0.524 3.476 9 O -0.569 6.569 10 C -0.112 4.112 11 C 0.006 3.994 12 C -0.528 4.528 13 H 0.052 0.948 14 C 0.016 3.984 15 N -0.942 5.942 16 Si 0.936 3.064 17 H -0.270 1.270 18 H -0.277 1.277 19 H -0.262 1.262 20 C -0.153 4.153 21 C -0.081 4.081 22 C -0.129 4.129 23 C -0.078 4.078 24 C -0.158 4.158 25 C 0.087 3.913 26 F -0.145 7.145 27 N -0.377 5.377 28 O 0.088 5.912 29 H 0.125 0.875 30 H 0.128 0.872 31 H 0.113 0.887 32 H 0.417 0.583 33 H 0.104 0.896 34 H 0.110 0.890 35 H 0.013 0.987 36 H 0.008 0.992 37 H 0.268 0.732 38 H 0.136 0.864 39 H 0.161 0.839 40 H 0.172 0.828 41 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.180 -7.789 -20.739 32.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.024 4.024 3 N -0.239 5.239 4 C -0.116 4.116 5 C 0.181 3.819 6 H 0.115 0.885 7 N -0.368 5.368 8 C 0.313 3.687 9 O -0.447 6.447 10 C -0.152 4.152 11 C -0.032 4.032 12 C -0.566 4.566 13 H 0.070 0.930 14 C -0.182 4.182 15 N -0.583 5.583 16 Si 0.761 3.239 17 H -0.195 1.195 18 H -0.202 1.202 19 H -0.186 1.186 20 C -0.156 4.156 21 C -0.099 4.099 22 C -0.146 4.146 23 C -0.096 4.096 24 C -0.176 4.176 25 C 0.067 3.933 26 F -0.124 7.124 27 N -0.083 5.083 28 O 0.026 5.974 29 H 0.143 0.857 30 H 0.146 0.854 31 H 0.131 0.869 32 H 0.255 0.745 33 H 0.123 0.877 34 H 0.128 0.872 35 H 0.031 0.969 36 H 0.027 0.973 37 H 0.077 0.923 38 H 0.154 0.846 39 H 0.178 0.822 40 H 0.190 0.810 41 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -22.217 -6.944 -20.815 31.226 hybrid contribution 0.071 0.741 0.587 0.948 sum -22.146 -6.203 -20.228 30.628 Atomic orbital electron populations 1.20834 0.75877 1.07791 1.07371 1.29947 1.00550 0.79105 0.92820 1.71899 0.99863 1.30430 1.21722 1.25275 0.94805 0.88614 1.02885 1.17219 0.81590 0.96110 0.86953 0.88467 1.45870 1.32449 1.14746 1.43704 1.21376 0.80629 0.85748 0.80899 1.90674 1.72363 1.18656 1.62986 1.21521 0.95971 1.00558 0.97150 1.19227 0.93993 0.94640 0.95354 1.21386 1.14370 0.97642 1.23195 0.92977 1.25765 0.95096 1.02786 0.94574 1.70016 1.19990 1.38062 1.30212 0.85866 0.77576 0.80684 0.79819 1.19508 1.20231 1.18611 1.20027 1.01559 0.99675 0.94360 1.21095 0.93932 0.96569 0.98317 1.21630 1.00539 1.00278 0.92193 1.21533 0.94343 0.92578 1.01150 1.21478 0.99102 1.02318 0.94725 1.17873 0.90248 0.89747 0.95439 1.91480 1.61197 1.65389 1.94333 1.74547 0.98738 1.14614 1.20443 1.85265 1.10899 1.35967 1.65314 0.85716 0.85373 0.86859 0.74505 0.87734 0.87193 0.96899 0.97333 0.92334 0.84602 0.82170 0.81043 0.82342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.25 10.51 71.24 0.75 0.50 16 2 C 0.19 3.26 8.51 88.38 0.75 4.01 16 3 N -0.51 -12.80 11.55 -303.20 -3.50 -16.30 16 4 C 0.16 4.31 6.99 138.46 0.97 5.28 16 5 C 0.29 8.86 2.50 43.50 0.11 8.97 16 6 H 0.10 3.55 7.23 -2.39 -0.02 3.53 16 7 N -0.71 -21.20 3.80 -449.68 -1.71 -22.90 16 8 C 0.52 19.55 7.79 87.66 0.68 20.23 16 9 O -0.57 -26.09 15.64 -3.04 -0.05 -26.14 16 10 C -0.11 -4.31 5.64 29.85 0.17 -4.14 16 11 C 0.01 0.29 3.33 29.85 0.10 0.39 16 12 C -0.53 -30.52 9.66 25.60 0.25 -30.27 16 13 H 0.05 3.16 7.99 -2.91 -0.02 3.13 16 14 C 0.02 0.93 5.47 84.65 0.46 1.40 16 15 N -0.94 -59.16 13.96 21.45 0.30 -58.86 16 16 Si 0.94 47.17 27.47 68.60 1.88 49.05 16 17 H -0.27 -13.23 7.11 99.48 0.71 -12.52 16 18 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 19 H -0.26 -13.15 6.54 99.48 0.65 -12.50 16 20 C -0.15 -4.41 5.01 -19.82 -0.10 -4.51 16 21 C -0.08 -1.99 9.32 22.26 0.21 -1.79 16 22 C -0.13 -2.43 10.05 22.28 0.22 -2.21 16 23 C -0.08 -1.31 10.04 22.26 0.22 -1.09 16 24 C -0.16 -3.29 10.03 22.31 0.22 -3.07 16 25 C 0.09 2.43 7.24 22.37 0.16 2.59 16 26 F -0.15 -4.49 16.57 44.97 0.75 -3.74 16 27 N -0.38 -9.26 11.87 -60.32 -0.72 -9.98 16 28 O 0.09 1.72 11.31 74.90 0.85 2.56 16 29 H 0.12 0.05 8.14 -2.38 -0.02 0.03 16 30 H 0.13 -0.16 8.14 -2.39 -0.02 -0.18 16 31 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.42 10.30 8.36 -92.71 -0.78 9.53 16 33 H 0.10 3.67 8.14 -2.38 -0.02 3.65 16 34 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 35 H 0.01 0.66 7.16 -2.39 -0.02 0.65 16 36 H 0.01 0.43 7.53 -2.39 -0.02 0.42 16 37 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 38 H 0.14 3.15 7.26 -2.91 -0.02 3.12 16 39 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 40 H 0.17 1.54 8.06 -2.91 -0.02 1.52 16 41 H 0.16 2.48 8.06 -2.91 -0.02 2.46 16 Total: -1.00 -81.96 363.71 3.24 -78.73 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: 0.25 Total: 11.28 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: 5.18 Total: -3.69 kcal Atomic # 7 Polarization: -102.42 SS G_CDS: -5.63 Total: -108.04 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: 0.80 Total: -23.58 kcal Atomic # 9 Polarization: -4.49 SS G_CDS: 0.75 Total: -3.74 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 1.88 Total: 49.05 kcal Total: -81.96 3.24 -78.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360367970.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.620 kcal (2) G-P(sol) polarization free energy of solvation -81.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds