Wall clock time and date at job start Tue Mar 31 2020 16:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31134 * 126.54839 * 2 1 4 4 C 1.34490 * 105.61260 * 180.02562 * 3 2 1 5 5 C 1.50707 * 126.28527 * 180.02562 * 4 3 2 6 6 H 1.09000 * 109.46973 * 344.97263 * 5 4 3 7 7 N 1.46491 * 109.47006 * 224.97442 * 5 4 3 8 8 C 1.34784 * 120.00073 * 154.99883 * 7 5 4 9 9 O 1.21279 * 119.99954 * 0.02562 * 8 7 5 10 10 C 1.50698 * 120.00003 * 179.97438 * 8 7 5 11 11 C 1.53004 * 109.47088 * 180.02562 * 10 8 7 12 12 C 1.50698 * 109.47088 * 180.02562 * 11 10 8 13 13 H 1.08004 * 120.00156 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99762 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00343 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 119.99806 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47024 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.46799 * 120.00006 * 16 14 12 19 19 H 1.48492 * 109.47075 * 240.00016 * 16 14 12 20 20 C 1.50699 * 109.47094 * 104.97160 * 5 4 3 21 21 C 1.38218 * 120.01202 * 100.00078 * 20 5 4 22 22 C 1.38219 * 120.02721 * 179.97438 * 21 20 5 23 23 C 1.38264 * 120.05010 * 0.02562 * 22 21 20 24 24 C 1.38179 * 120.02720 * 0.02562 * 23 22 21 25 25 C 1.38434 * 120.01154 * 279.72481 * 20 5 4 26 26 F 1.35096 * 120.03066 * 0.02562 * 25 20 5 27 27 N 1.29938 * 107.42847 * 359.97438 * 4 3 2 28 28 O 1.21303 * 110.25257 * 359.97438 * 27 4 3 29 29 H 1.09003 * 109.46787 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46911 * 299.96581 * 1 2 3 31 31 H 1.09002 * 109.47647 * 59.96998 * 1 2 3 32 32 H 0.96999 * 119.99980 * 335.00009 * 7 5 4 33 33 H 1.09001 * 109.46999 * 300.00164 * 10 8 7 34 34 H 1.09003 * 109.47189 * 60.00165 * 10 8 7 35 35 H 1.09000 * 109.46610 * 300.00346 * 11 10 8 36 36 H 1.08997 * 109.46763 * 59.99677 * 11 10 8 37 37 H 0.96993 * 120.00238 * 180.02562 * 15 14 12 38 38 H 1.08007 * 119.98553 * 359.97438 * 21 20 5 39 39 H 1.07997 * 119.97418 * 180.02562 * 22 21 20 40 40 H 1.08000 * 119.98592 * 179.97438 * 23 22 21 41 41 H 1.07995 * 120.01356 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2879 1.0535 0.0000 4 6 3.5440 0.5729 -0.0006 5 6 4.8111 1.3888 -0.0003 6 1 4.5792 2.4202 -0.2660 7 7 5.7504 0.8324 -0.9770 8 6 6.6973 1.6193 -1.5255 9 8 6.7719 2.7880 -1.2101 10 6 7.6639 1.0467 -2.5299 11 6 8.6274 2.1418 -2.9921 12 6 9.5937 1.5693 -3.9970 13 1 9.5270 0.5287 -4.2782 14 6 10.5622 2.3744 -4.5581 15 7 10.6424 3.6420 -4.2169 16 14 11.7604 1.6646 -5.8032 17 1 11.4603 0.2257 -6.0143 18 1 11.6250 2.3921 -7.0907 19 1 13.1477 1.8121 -5.2947 20 6 5.4325 1.3512 1.3722 21 6 6.4890 0.4981 1.6296 22 6 7.0594 0.4637 2.8881 23 6 6.5737 1.2822 3.8910 24 6 5.5169 2.1352 3.6363 25 6 4.9490 2.1754 2.3739 26 9 3.9197 3.0134 2.1221 27 7 3.4646 -0.7240 -0.0003 28 8 2.3030 -1.0735 0.0008 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5133 0.8903 31 1 -0.3634 0.5143 -0.8897 32 1 5.6910 -0.1024 -1.2290 33 1 8.2292 0.2366 -2.0691 34 1 7.1117 0.6625 -3.3875 35 1 8.0623 2.9521 -3.4527 36 1 9.1795 2.5256 -2.1343 37 1 11.3235 4.2084 -4.6119 38 1 6.8689 -0.1421 0.8470 39 1 7.8852 -0.2030 3.0882 40 1 7.0200 1.2542 4.8741 41 1 5.1374 2.7741 4.4199 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360367971.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:59:36 Heat of formation + Delta-G solvation = -16.360075 kcal Electronic energy + Delta-G solvation = -28066.403672 eV Core-core repulsion = 23863.091686 eV Total energy + Delta-G solvation = -4203.311987 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -50.04250 -46.81203 -41.34860 -39.88222 -37.63851 -36.27594 -35.58574 -34.28409 -33.24416 -32.27230 -31.61629 -29.81561 -28.87900 -27.34837 -25.03870 -24.16184 -23.57563 -23.49563 -21.88209 -21.39088 -19.42240 -19.13369 -18.80843 -18.53615 -17.86243 -17.59101 -17.32686 -16.83364 -16.66652 -16.42594 -16.35416 -15.63098 -15.28121 -15.21341 -14.91908 -14.65591 -14.27108 -14.23054 -14.17873 -14.07396 -13.97966 -13.29013 -13.24820 -13.03540 -12.99696 -12.86460 -12.59087 -12.46223 -12.25107 -12.17399 -11.97415 -11.68125 -11.31740 -11.14370 -10.87829 -10.63707 -10.54701 -10.08971 -9.78845 -8.18898 -6.32940 -0.07975 0.05683 0.12994 0.93372 1.41880 1.43207 1.51349 1.56490 1.74647 1.82959 2.29983 2.42342 2.62883 2.90866 3.14389 3.16399 3.36379 3.65555 3.71315 3.88332 3.96444 4.15768 4.26903 4.32747 4.36465 4.45478 4.48890 4.61146 4.63250 4.74616 4.87808 4.90618 4.95848 5.01927 5.09944 5.11783 5.26198 5.34045 5.48759 5.59829 5.80467 5.83523 6.15482 6.28584 6.84682 6.99119 7.10581 7.37306 8.93963 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012479 B = 0.003090 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.176028 B = 9058.232986 C =10344.015773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.194 3.806 3 N -0.505 5.505 4 C 0.158 3.842 5 C 0.289 3.711 6 H 0.094 0.906 7 N -0.713 5.713 8 C 0.521 3.479 9 O -0.571 6.571 10 C -0.115 4.115 11 C 0.043 3.957 12 C -0.541 4.541 13 H 0.077 0.923 14 C -0.007 4.007 15 N -0.937 5.937 16 Si 0.974 3.026 17 H -0.252 1.252 18 H -0.281 1.281 19 H -0.280 1.280 20 C -0.153 4.153 21 C -0.082 4.082 22 C -0.129 4.129 23 C -0.079 4.079 24 C -0.157 4.157 25 C 0.085 3.915 26 F -0.145 7.145 27 N -0.377 5.377 28 O 0.089 5.911 29 H 0.128 0.872 30 H 0.119 0.881 31 H 0.118 0.882 32 H 0.418 0.582 33 H 0.112 0.888 34 H 0.106 0.894 35 H -0.018 1.018 36 H -0.014 1.014 37 H 0.263 0.737 38 H 0.135 0.865 39 H 0.161 0.839 40 H 0.173 0.827 41 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.428 -13.706 16.403 29.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.025 4.025 3 N -0.239 5.239 4 C -0.115 4.115 5 C 0.181 3.819 6 H 0.112 0.888 7 N -0.368 5.368 8 C 0.311 3.689 9 O -0.449 6.449 10 C -0.155 4.155 11 C 0.006 3.994 12 C -0.579 4.579 13 H 0.095 0.905 14 C -0.204 4.204 15 N -0.577 5.577 16 Si 0.798 3.202 17 H -0.176 1.176 18 H -0.207 1.207 19 H -0.206 1.206 20 C -0.156 4.156 21 C -0.100 4.100 22 C -0.146 4.146 23 C -0.096 4.096 24 C -0.176 4.176 25 C 0.065 3.935 26 F -0.123 7.123 27 N -0.083 5.083 28 O 0.026 5.974 29 H 0.147 0.853 30 H 0.137 0.863 31 H 0.137 0.863 32 H 0.255 0.745 33 H 0.130 0.870 34 H 0.124 0.876 35 H 0.001 0.999 36 H 0.004 0.996 37 H 0.071 0.929 38 H 0.153 0.847 39 H 0.179 0.821 40 H 0.190 0.810 41 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -19.526 -12.760 16.559 28.606 hybrid contribution 0.335 0.336 -0.946 1.058 sum -19.191 -12.424 15.614 27.684 Atomic orbital electron populations 1.20828 0.75823 1.08100 1.07030 1.29962 1.00557 0.79093 0.92858 1.71885 0.99861 1.30459 1.21659 1.25243 0.94745 0.88603 1.02932 1.17192 0.81716 0.95972 0.87002 0.88843 1.45873 1.32529 1.14662 1.43698 1.21514 0.80707 0.85745 0.80962 1.90690 1.72341 1.19035 1.62803 1.21672 0.95962 1.00777 0.97078 1.18691 0.93007 0.92974 0.94763 1.21711 1.14811 0.97234 1.24145 0.90520 1.26131 0.99960 0.95076 0.99252 1.70182 1.35408 1.07110 1.45002 0.85272 0.77924 0.79198 0.77846 1.17573 1.20740 1.20562 1.20043 1.00763 1.00672 0.94127 1.21103 0.93655 0.96702 0.98577 1.21631 1.00727 1.00245 0.92039 1.21536 0.93932 0.93068 1.01114 1.21484 0.98850 1.02444 0.94788 1.17880 0.88420 0.91774 0.95427 1.91482 1.56486 1.69412 1.94951 1.74534 0.98758 1.14550 1.20460 1.85269 1.10876 1.35964 1.65261 0.85320 0.86315 0.86339 0.74491 0.87014 0.87632 0.99941 0.99573 0.92855 0.84671 0.82138 0.80951 0.82255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.29 10.51 71.24 0.75 0.46 16 2 C 0.19 3.43 8.51 88.38 0.75 4.18 16 3 N -0.50 -13.43 11.55 -303.21 -3.50 -16.93 16 4 C 0.16 4.56 6.98 138.47 0.97 5.52 16 5 C 0.29 9.48 2.45 43.50 0.11 9.58 16 6 H 0.09 3.67 7.37 -2.39 -0.02 3.65 16 7 N -0.71 -22.66 3.68 -449.69 -1.65 -24.32 16 8 C 0.52 21.17 7.78 87.66 0.68 21.85 16 9 O -0.57 -29.08 15.64 -3.03 -0.05 -29.13 16 10 C -0.12 -4.69 5.64 29.85 0.17 -4.53 16 11 C 0.04 2.43 4.26 29.85 0.13 2.55 16 12 C -0.54 -30.84 9.11 25.60 0.23 -30.61 16 13 H 0.08 3.97 7.74 -2.91 -0.02 3.95 16 14 C -0.01 -0.39 5.46 84.65 0.46 0.07 16 15 N -0.94 -59.76 13.29 21.45 0.28 -59.48 16 16 Si 0.97 44.47 29.54 68.60 2.03 46.50 16 17 H -0.25 -10.60 7.11 99.48 0.71 -9.90 16 18 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 19 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 20 C -0.15 -4.72 5.03 -19.82 -0.10 -4.82 16 21 C -0.08 -2.19 9.32 22.26 0.21 -1.99 16 22 C -0.13 -2.66 10.04 22.27 0.22 -2.43 16 23 C -0.08 -1.44 10.04 22.26 0.22 -1.21 16 24 C -0.16 -3.51 10.03 22.31 0.22 -3.28 16 25 C 0.08 2.52 7.24 22.38 0.16 2.68 16 26 F -0.14 -4.68 16.66 44.97 0.75 -3.93 16 27 N -0.38 -9.65 11.86 -60.33 -0.72 -10.37 16 28 O 0.09 1.81 11.31 74.85 0.85 2.65 16 29 H 0.13 -0.14 8.14 -2.39 -0.02 -0.16 16 30 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 31 H 0.12 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.42 10.89 8.36 -92.71 -0.77 10.11 16 33 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 34 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 35 H -0.02 -1.14 8.10 -2.39 -0.02 -1.16 16 36 H -0.01 -0.89 8.10 -2.39 -0.02 -0.91 16 37 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 38 H 0.14 3.42 7.14 -2.91 -0.02 3.40 16 39 H 0.16 2.33 8.06 -2.91 -0.02 2.31 16 40 H 0.17 1.76 8.06 -2.91 -0.02 1.74 16 41 H 0.16 2.69 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -85.32 367.27 3.48 -81.83 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: 0.31 Total: 15.14 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: 5.19 Total: -1.97 kcal Atomic # 7 Polarization: -105.51 SS G_CDS: -5.59 Total: -111.09 kcal Atomic # 8 Polarization: -27.27 SS G_CDS: 0.80 Total: -26.48 kcal Atomic # 9 Polarization: -4.68 SS G_CDS: 0.75 Total: -3.93 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -85.32 3.48 -81.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360367971.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.474 kcal (2) G-P(sol) polarization free energy of solvation -85.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds