Wall clock time and date at job start Tue Mar 31 2020 17:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47651 * 2 1 4 4 N 1.46505 * 109.47161 * 239.99659 * 2 1 3 5 5 N 1.40451 * 126.82002 * 59.68883 * 4 2 1 6 6 C 1.30714 * 106.78975 * 179.88869 * 5 4 2 7 7 N 1.33244 * 108.94617 * 0.37592 * 6 5 4 8 8 C 1.30824 * 109.82870 * 359.75429 * 7 6 5 9 9 C 1.50704 * 125.95857 * 180.02562 * 8 7 6 10 10 S 1.81402 * 109.46999 * 269.95670 * 9 8 7 11 11 O 1.42097 * 109.46883 * 63.61250 * 10 9 8 12 12 C 1.81401 * 102.99779 * 179.97438 * 10 9 8 13 13 C 1.50705 * 109.46992 * 179.97438 * 12 10 9 14 14 C 1.38629 * 119.75234 * 269.73156 * 13 12 10 15 15 C 1.37617 * 120.25089 * 179.72379 * 14 13 12 16 16 C 1.40724 * 119.74198 * 0.56432 * 15 14 13 17 17 C 1.41398 * 120.24362 * 179.68615 * 16 15 14 18 18 H 1.07994 * 119.99916 * 24.40611 * 17 16 15 19 19 C 1.39940 * 119.99653 * 204.40774 * 17 16 15 20 20 N 1.30825 * 120.00278 * 17.86448 * 19 17 16 21 21 Si 1.86805 * 119.99931 * 197.86677 * 19 17 16 22 22 H 1.48501 * 109.46883 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47250 * 119.99694 * 21 19 17 24 24 H 1.48497 * 109.46923 * 240.00123 * 21 19 17 25 25 C 1.40716 * 119.50689 * 359.70691 * 16 15 14 26 26 C 1.37612 * 119.75071 * 0.02562 * 25 16 15 27 27 H 1.09003 * 109.46970 * 60.00239 * 1 2 3 28 28 H 1.09005 * 109.47390 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46985 * 300.00410 * 1 2 3 30 30 H 1.09005 * 109.47549 * 120.00249 * 2 1 3 31 31 H 1.09002 * 109.46925 * 59.99365 * 3 2 1 32 32 H 1.08992 * 109.47317 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.46428 * 300.00342 * 3 2 1 34 34 H 1.08003 * 125.52139 * 180.12646 * 6 5 4 35 35 H 1.08999 * 109.47374 * 29.95612 * 9 8 7 36 36 H 1.09002 * 109.46999 * 149.95906 * 9 8 7 37 37 H 1.08997 * 109.47310 * 299.99590 * 12 10 9 38 38 H 1.08997 * 109.46966 * 60.00457 * 12 10 9 39 39 H 1.08001 * 119.87599 * 359.97270 * 14 13 12 40 40 H 1.08000 * 120.13211 * 180.27811 * 15 14 13 41 41 H 0.97003 * 119.99731 * 180.02562 * 20 19 17 42 42 H 1.08002 * 120.12014 * 179.97438 * 25 16 15 43 43 H 1.07996 * 119.87613 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6907 -1.1962 5 7 1.7639 -0.3415 -2.5326 6 6 2.3883 -1.2162 -3.2768 7 7 3.0083 -2.0921 -2.4870 8 6 2.7941 -1.7879 -1.2328 9 6 3.3251 -2.5365 -0.0375 10 16 2.1415 -3.8241 0.4442 11 8 2.0214 -4.7738 -0.6060 12 6 2.9439 -4.6020 1.8730 13 6 2.0693 -5.7114 2.3979 14 6 1.1243 -5.4387 3.3749 15 6 0.3164 -6.4428 3.8575 16 6 0.4605 -7.7528 3.3639 17 6 -0.3595 -8.7938 3.8570 18 1 -1.3223 -8.5643 4.2890 19 6 0.0766 -10.1216 3.7851 20 7 1.3445 -10.3845 3.5982 21 14 -1.1516 -11.5187 3.9560 22 1 -2.5123 -10.9595 4.1588 23 1 -1.1348 -12.3462 2.7230 24 1 -0.7842 -12.3609 5.1225 25 6 1.4269 -8.0189 2.3763 26 6 2.2201 -6.9982 1.9044 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4424 -0.0005 33 1 1.6766 1.9562 -0.8900 34 1 2.3966 -1.2292 -4.3567 35 1 4.2796 -2.9973 -0.2919 36 1 3.4657 -1.8436 0.7921 37 1 3.9078 -5.0111 1.5704 38 1 3.0944 -3.8577 2.6550 39 1 1.0190 -4.4336 3.7559 40 1 -0.4222 -6.2273 4.6154 41 1 1.6466 -11.3049 3.5481 42 1 1.5462 -9.0207 1.9908 43 1 2.9621 -7.2001 1.1462 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000432636834.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:10 Heat of formation + Delta-G solvation = 61.663148 kcal Electronic energy + Delta-G solvation = -25279.194652 eV Core-core repulsion = 21645.479182 eV Total energy + Delta-G solvation = -3633.715470 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.20492 -37.69940 -36.35732 -35.40175 -34.06666 -32.77203 -31.33324 -31.09516 -29.38584 -28.34683 -27.64390 -27.53473 -24.08534 -23.63839 -21.36030 -21.09939 -20.43018 -19.98078 -17.48710 -17.39316 -17.24307 -16.14787 -15.45247 -15.17600 -15.10081 -14.84247 -14.55314 -14.36328 -14.08770 -13.84780 -13.62164 -13.42450 -13.34330 -12.94531 -12.62466 -12.58859 -12.50699 -12.04316 -11.93649 -11.80930 -11.71785 -11.55939 -11.33257 -11.19952 -11.11191 -10.69302 -10.65027 -10.30246 -9.99779 -9.82923 -9.76922 -9.49760 -9.44185 -9.15630 -8.18875 -7.54673 -7.30270 -6.85347 -4.43017 1.15333 1.80968 2.12126 2.62868 2.84587 2.98142 2.99175 3.03880 3.08784 3.19367 3.84867 3.86709 4.03219 4.11652 4.51571 4.53099 4.55475 4.70634 4.71089 5.15577 5.17977 5.25292 5.35955 5.41647 5.45215 5.48788 5.53081 5.63486 5.76557 5.85790 6.14842 6.21634 6.24349 6.32845 6.37812 6.68962 6.87727 6.97704 7.16761 7.24966 7.51349 7.72592 7.96631 7.98775 8.05244 8.18895 8.54807 8.79266 8.87088 10.08171 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.022858 B = 0.002460 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.677022 B =11380.002145 C =11723.589162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.144 3.856 3 C -0.160 4.160 4 N -0.370 5.370 5 N -0.318 5.318 6 C 0.197 3.803 7 N -0.538 5.538 8 C 0.305 3.695 9 C -0.400 4.400 10 S 1.234 4.766 11 O -0.812 6.812 12 C -0.357 4.357 13 C -0.213 4.213 14 C -0.080 4.080 15 C -0.227 4.227 16 C 0.114 3.886 17 C -0.455 4.455 18 H 0.081 0.919 19 C 0.074 3.926 20 N -0.787 5.787 21 Si 0.909 3.091 22 H -0.259 1.259 23 H -0.271 1.271 24 H -0.274 1.274 25 C -0.164 4.164 26 C -0.084 4.084 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.111 0.889 31 H 0.079 0.921 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.215 0.785 35 H 0.119 0.881 36 H 0.132 0.868 37 H 0.080 0.920 38 H 0.111 0.889 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.282 0.718 42 H 0.119 0.881 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.797 19.774 -2.453 19.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.042 3.958 3 C -0.218 4.218 4 N -0.163 5.163 5 N -0.146 5.146 6 C -0.105 4.105 7 N -0.266 5.266 8 C 0.029 3.971 9 C -0.533 4.533 10 S 1.431 4.569 11 O -0.806 6.806 12 C -0.495 4.495 13 C -0.217 4.217 14 C -0.099 4.099 15 C -0.246 4.246 16 C 0.110 3.890 17 C -0.485 4.485 18 H 0.099 0.901 19 C -0.145 4.145 20 N -0.411 5.411 21 Si 0.733 3.267 22 H -0.182 1.182 23 H -0.196 1.196 24 H -0.199 1.199 25 C -0.183 4.183 26 C -0.103 4.103 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.100 0.900 30 H 0.129 0.871 31 H 0.098 0.902 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.232 0.768 35 H 0.137 0.863 36 H 0.150 0.850 37 H 0.099 0.901 38 H 0.129 0.871 39 H 0.113 0.887 40 H 0.114 0.886 41 H 0.093 0.907 42 H 0.137 0.863 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.098 19.817 -3.313 20.093 hybrid contribution 1.786 -1.658 -0.311 2.457 sum 1.689 18.159 -3.624 18.594 Atomic orbital electron populations 1.22187 0.92488 1.03851 1.03801 1.21563 0.96394 0.94201 0.83635 1.22130 1.01695 0.94273 1.03713 1.50569 1.38198 1.21561 1.05983 1.77941 1.25231 1.24706 0.86690 1.25936 0.93944 0.89476 1.01192 1.70515 1.27553 1.28920 0.99611 1.23134 0.92350 0.87501 0.94164 1.26708 1.15743 1.13378 0.97483 1.71149 1.01157 0.94757 0.89832 1.93194 1.76010 1.59900 1.51519 1.26153 1.06167 1.05683 1.11466 1.18219 1.04402 0.92463 1.06602 1.20374 0.95880 0.97334 0.96357 1.20955 1.04547 0.94214 1.04924 1.17691 0.90614 0.91785 0.88864 1.19695 1.03657 0.90519 1.34584 0.90087 1.25975 0.95427 1.00659 0.92398 1.69831 1.14995 1.22030 1.34274 0.86249 0.81546 0.80216 0.78696 1.18244 1.19599 1.19912 1.21315 0.99554 0.98357 0.99113 1.20572 0.98663 0.92793 0.98292 0.91069 0.91259 0.89995 0.87098 0.90198 0.92153 0.91099 0.76818 0.86260 0.85030 0.90108 0.87112 0.88669 0.88572 0.90711 0.86346 0.89622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.10 9.47 37.15 0.35 -0.75 16 2 C 0.14 1.05 3.68 -67.93 -0.25 0.80 16 3 C -0.16 -0.97 9.48 37.16 0.35 -0.62 16 4 N -0.37 -4.25 3.28 -51.88 -0.17 -4.42 16 5 N -0.32 -4.12 12.60 29.29 0.37 -3.75 16 6 C 0.20 2.62 13.03 -91.81 -1.20 1.43 16 7 N -0.54 -8.55 11.19 -11.97 -0.13 -8.68 16 8 C 0.30 4.11 7.24 -155.70 -1.13 2.98 16 9 C -0.40 -4.42 6.08 36.01 0.22 -4.20 16 10 S 1.23 17.31 13.12 -107.50 -1.41 15.90 16 11 O -0.81 -17.33 18.14 -35.23 -0.64 -17.97 16 12 C -0.36 -5.35 6.04 36.01 0.22 -5.13 16 13 C -0.21 -4.35 5.16 -104.33 -0.54 -4.88 16 14 C -0.08 -1.58 9.67 -39.66 -0.38 -1.96 16 15 C -0.23 -5.17 9.80 -38.87 -0.38 -5.55 16 16 C 0.11 2.95 5.58 -106.82 -0.60 2.35 16 17 C -0.46 -11.73 9.05 -37.74 -0.34 -12.07 16 18 H 0.08 1.99 7.91 -52.49 -0.42 1.57 16 19 C 0.07 1.83 5.14 -17.34 -0.09 1.74 16 20 N -0.79 -20.10 10.95 55.55 0.61 -19.49 16 21 Si 0.91 18.29 29.60 -169.99 -5.03 13.26 16 22 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 23 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 24 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 25 C -0.16 -4.29 8.70 -38.87 -0.34 -4.63 16 26 C -0.08 -2.00 9.67 -39.66 -0.38 -2.38 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.11 0.50 6.74 -51.93 -0.35 0.15 16 31 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.22 2.02 8.06 -52.48 -0.42 1.60 16 35 H 0.12 1.42 8.14 -51.92 -0.42 0.99 16 36 H 0.13 0.83 7.13 -51.92 -0.37 0.46 16 37 H 0.08 1.25 8.08 -51.93 -0.42 0.83 16 38 H 0.11 1.20 8.08 -51.93 -0.42 0.78 16 39 H 0.10 1.45 8.06 -52.49 -0.42 1.03 16 40 H 0.10 2.02 8.06 -52.49 -0.42 1.60 16 41 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 42 H 0.12 3.24 6.16 -52.49 -0.32 2.91 16 43 H 0.09 2.00 8.06 -52.49 -0.42 1.58 16 LS Contribution 379.60 15.07 5.72 5.72 Total: -1.00 -36.04 379.60 -11.25 -47.30 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -6.08 Total: 5.01 kcal Atomic # 6 Polarization: -28.40 SS G_CDS: -4.48 Total: -32.88 kcal Atomic # 7 Polarization: -37.01 SS G_CDS: 0.67 Total: -36.34 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: -0.64 Total: -17.97 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -5.03 Total: 13.26 kcal Atomic # 16 Polarization: 17.31 SS G_CDS: -1.41 Total: 15.90 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.04 -11.25 -47.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000432636834.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.958 kcal (2) G-P(sol) polarization free energy of solvation -36.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds