Wall clock time and date at job start Tue Mar 31 2020 17:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47651 * 2 1 4 4 N 1.46505 * 109.47161 * 239.99659 * 2 1 3 5 5 N 1.40451 * 126.82002 * 59.68883 * 4 2 1 6 6 C 1.30714 * 106.78975 * 179.88869 * 5 4 2 7 7 N 1.33244 * 108.94617 * 0.37592 * 6 5 4 8 8 C 1.30824 * 109.82870 * 359.75429 * 7 6 5 9 9 C 1.50704 * 125.95857 * 180.02562 * 8 7 6 10 10 S 1.81402 * 109.46999 * 269.95670 * 9 8 7 11 11 O 1.42100 * 109.47130 * 296.38690 * 10 9 8 12 12 C 1.81401 * 102.99779 * 179.97438 * 10 9 8 13 13 C 1.50705 * 109.46992 * 179.97438 * 12 10 9 14 14 C 1.38629 * 119.75234 * 269.73156 * 13 12 10 15 15 C 1.37617 * 120.25089 * 179.72379 * 14 13 12 16 16 C 1.40724 * 119.74198 * 0.56432 * 15 14 13 17 17 C 1.41398 * 120.24362 * 179.68615 * 16 15 14 18 18 H 1.07994 * 119.99916 * 24.40611 * 17 16 15 19 19 C 1.39940 * 119.99653 * 204.40774 * 17 16 15 20 20 N 1.30825 * 120.00278 * 17.86448 * 19 17 16 21 21 Si 1.86805 * 119.99931 * 197.86677 * 19 17 16 22 22 H 1.48501 * 109.46883 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47250 * 119.99694 * 21 19 17 24 24 H 1.48497 * 109.46923 * 240.00123 * 21 19 17 25 25 C 1.40716 * 119.50689 * 359.70691 * 16 15 14 26 26 C 1.37612 * 119.75071 * 0.02562 * 25 16 15 27 27 H 1.09003 * 109.46970 * 60.00239 * 1 2 3 28 28 H 1.09005 * 109.47390 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46985 * 300.00410 * 1 2 3 30 30 H 1.09005 * 109.47549 * 120.00249 * 2 1 3 31 31 H 1.09002 * 109.46925 * 59.99365 * 3 2 1 32 32 H 1.08992 * 109.47317 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.46428 * 300.00342 * 3 2 1 34 34 H 1.08003 * 125.52139 * 180.12646 * 6 5 4 35 35 H 1.08999 * 109.47374 * 29.95612 * 9 8 7 36 36 H 1.09002 * 109.46999 * 149.95906 * 9 8 7 37 37 H 1.08997 * 109.47310 * 299.99590 * 12 10 9 38 38 H 1.08997 * 109.46966 * 60.00457 * 12 10 9 39 39 H 1.08001 * 119.87599 * 359.97270 * 14 13 12 40 40 H 1.08000 * 120.13211 * 180.27811 * 15 14 13 41 41 H 0.97003 * 119.99731 * 180.02562 * 20 19 17 42 42 H 1.08002 * 120.12014 * 179.97438 * 25 16 15 43 43 H 1.07996 * 119.87613 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6907 -1.1962 5 7 1.7639 -0.3415 -2.5326 6 6 2.3883 -1.2162 -3.2768 7 7 3.0083 -2.0921 -2.4870 8 6 2.7941 -1.7879 -1.2328 9 6 3.3251 -2.5365 -0.0375 10 16 2.1415 -3.8241 0.4442 11 8 0.9239 -3.2182 0.8559 12 6 2.9439 -4.6020 1.8730 13 6 2.0693 -5.7114 2.3979 14 6 1.1243 -5.4387 3.3749 15 6 0.3164 -6.4428 3.8575 16 6 0.4605 -7.7528 3.3639 17 6 -0.3595 -8.7938 3.8570 18 1 -1.3223 -8.5643 4.2890 19 6 0.0766 -10.1216 3.7851 20 7 1.3445 -10.3845 3.5982 21 14 -1.1516 -11.5187 3.9560 22 1 -2.5123 -10.9595 4.1588 23 1 -1.1348 -12.3462 2.7230 24 1 -0.7842 -12.3609 5.1225 25 6 1.4269 -8.0189 2.3763 26 6 2.2201 -6.9982 1.9044 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4424 -0.0005 33 1 1.6766 1.9562 -0.8900 34 1 2.3966 -1.2292 -4.3567 35 1 4.2796 -2.9973 -0.2919 36 1 3.4657 -1.8436 0.7921 37 1 3.9078 -5.0111 1.5704 38 1 3.0944 -3.8577 2.6550 39 1 1.0190 -4.4336 3.7559 40 1 -0.4222 -6.2273 4.6154 41 1 1.6466 -11.3049 3.5481 42 1 1.5462 -9.0207 1.9908 43 1 2.9621 -7.2001 1.1462 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000432636837.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:14 Heat of formation + Delta-G solvation = 60.578952 kcal Electronic energy + Delta-G solvation = -25383.319986 eV Core-core repulsion = 21749.557502 eV Total energy + Delta-G solvation = -3633.762484 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.20134 -37.70032 -36.29459 -35.46831 -34.07016 -32.78331 -31.33551 -31.06386 -29.38799 -28.35082 -27.53714 -27.52504 -24.08673 -23.61304 -21.31402 -21.11133 -20.41729 -19.96592 -17.58969 -17.39186 -17.18724 -16.15738 -15.47177 -15.14184 -14.95366 -14.84729 -14.48688 -14.45020 -14.12308 -13.80047 -13.64362 -13.47141 -13.30299 -12.87281 -12.62566 -12.53596 -12.45134 -12.04552 -11.90189 -11.69906 -11.65642 -11.58633 -11.29110 -11.24175 -11.11814 -10.69345 -10.67230 -10.29396 -10.04901 -9.80518 -9.76394 -9.50533 -9.45520 -9.17620 -8.14353 -7.55958 -7.28769 -6.86407 -4.43249 1.13028 1.82204 2.16087 2.61695 2.84447 2.94749 2.98959 3.03444 3.08683 3.19174 3.73267 3.86502 4.10735 4.20605 4.50848 4.53109 4.61180 4.72032 4.79685 5.19920 5.21500 5.33548 5.40340 5.42648 5.52738 5.55695 5.58507 5.63376 5.81983 6.07676 6.18352 6.21173 6.25366 6.30204 6.39109 6.70089 6.86439 6.97818 7.16072 7.25402 7.51108 7.74337 7.95756 7.97245 8.02470 8.19570 8.53720 8.79304 8.86650 10.07230 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.023761 B = 0.002454 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.100634 B =11407.940691 C =11708.409029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.153 3.847 3 C -0.159 4.159 4 N -0.365 5.365 5 N -0.319 5.319 6 C 0.195 3.805 7 N -0.538 5.538 8 C 0.303 3.697 9 C -0.395 4.395 10 S 1.244 4.756 11 O -0.827 6.827 12 C -0.355 4.355 13 C -0.212 4.212 14 C -0.072 4.072 15 C -0.225 4.225 16 C 0.114 3.886 17 C -0.455 4.455 18 H 0.079 0.921 19 C 0.076 3.924 20 N -0.787 5.787 21 Si 0.908 3.092 22 H -0.260 1.260 23 H -0.270 1.270 24 H -0.274 1.274 25 C -0.166 4.166 26 C -0.090 4.090 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.100 0.900 31 H 0.077 0.923 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.218 0.782 35 H 0.149 0.851 36 H 0.100 0.900 37 H 0.113 0.887 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.282 0.718 42 H 0.122 0.878 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.253 13.545 -8.414 16.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.051 3.949 3 C -0.217 4.217 4 N -0.156 5.156 5 N -0.147 5.147 6 C -0.108 4.108 7 N -0.267 5.267 8 C 0.027 3.973 9 C -0.529 4.529 10 S 1.442 4.558 11 O -0.822 6.822 12 C -0.493 4.493 13 C -0.216 4.216 14 C -0.092 4.092 15 C -0.245 4.245 16 C 0.111 3.889 17 C -0.485 4.485 18 H 0.098 0.902 19 C -0.143 4.143 20 N -0.412 5.412 21 Si 0.733 3.267 22 H -0.183 1.183 23 H -0.195 1.195 24 H -0.199 1.199 25 C -0.185 4.185 26 C -0.110 4.110 27 H 0.085 0.915 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.118 0.882 31 H 0.096 0.904 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.234 0.766 35 H 0.167 0.833 36 H 0.119 0.881 37 H 0.131 0.869 38 H 0.095 0.905 39 H 0.102 0.898 40 H 0.111 0.889 41 H 0.093 0.907 42 H 0.139 0.861 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.318 13.637 -9.222 17.020 hybrid contribution 0.049 0.786 2.068 2.213 sum 4.368 14.423 -7.154 16.682 Atomic orbital electron populations 1.22104 0.92325 1.04432 1.02877 1.21414 0.96712 0.93556 0.83249 1.22143 1.01492 0.94441 1.03668 1.50513 1.37578 1.21590 1.05953 1.77956 1.25129 1.24972 0.86655 1.25953 0.93987 0.89671 1.01176 1.70457 1.27852 1.29388 0.99046 1.23150 0.92262 0.87627 0.94291 1.26698 1.16318 1.13355 0.96517 1.71819 0.82103 0.96091 1.05759 1.93082 1.31837 1.74515 1.82768 1.26136 1.06788 1.04494 1.11897 1.18206 1.04244 0.92594 1.06565 1.20378 0.95703 0.96831 0.96262 1.20956 1.04318 0.94289 1.04902 1.17687 0.90736 0.91506 0.88978 1.19696 1.03646 0.90540 1.34596 0.90244 1.25947 0.95439 1.00544 0.92377 1.69824 1.14882 1.22002 1.34465 0.86254 0.81580 0.80193 0.78716 1.18337 1.19511 1.19937 1.21325 0.99597 0.98405 0.99193 1.20567 0.98909 0.92236 0.99257 0.91454 0.90470 0.90719 0.88244 0.90397 0.92275 0.90960 0.76598 0.83255 0.88124 0.86853 0.90497 0.89774 0.88923 0.90713 0.86059 0.88526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.90 9.47 37.15 0.35 -1.55 16 2 C 0.15 1.78 3.68 -67.93 -0.25 1.53 16 3 C -0.16 -1.46 9.48 37.16 0.35 -1.11 16 4 N -0.36 -4.90 3.28 -51.88 -0.17 -5.07 16 5 N -0.32 -4.36 12.60 29.29 0.37 -3.99 16 6 C 0.19 2.38 13.03 -91.81 -1.20 1.19 16 7 N -0.54 -7.27 11.19 -11.97 -0.13 -7.40 16 8 C 0.30 4.03 7.24 -155.70 -1.13 2.90 16 9 C -0.40 -4.28 6.08 36.01 0.22 -4.06 16 10 S 1.24 16.94 13.12 -107.50 -1.41 15.53 16 11 O -0.83 -15.37 17.98 -35.23 -0.63 -16.00 16 12 C -0.36 -5.24 6.04 36.01 0.22 -5.02 16 13 C -0.21 -4.29 5.16 -104.33 -0.54 -4.83 16 14 C -0.07 -1.62 9.67 -39.66 -0.38 -2.00 16 15 C -0.22 -5.51 9.80 -38.87 -0.38 -5.89 16 16 C 0.11 2.96 5.58 -106.82 -0.60 2.36 16 17 C -0.46 -11.75 9.05 -37.74 -0.34 -12.09 16 18 H 0.08 1.99 7.91 -52.49 -0.42 1.57 16 19 C 0.08 1.83 5.14 -17.34 -0.09 1.74 16 20 N -0.79 -19.39 10.95 55.55 0.61 -18.78 16 21 Si 0.91 17.99 29.60 -169.99 -5.03 12.96 16 22 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 23 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 24 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 25 C -0.17 -4.05 8.70 -38.87 -0.34 -4.39 16 26 C -0.09 -1.90 9.67 -39.66 -0.38 -2.28 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.08 1.15 7.98 -51.93 -0.41 0.73 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.10 1.14 6.74 -51.93 -0.35 0.79 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.22 1.72 8.06 -52.48 -0.42 1.29 16 35 H 0.15 1.20 8.14 -51.92 -0.42 0.78 16 36 H 0.10 0.98 7.13 -51.92 -0.37 0.61 16 37 H 0.11 1.32 8.08 -51.93 -0.42 0.90 16 38 H 0.08 1.10 8.08 -51.93 -0.42 0.68 16 39 H 0.08 1.77 8.06 -52.49 -0.42 1.35 16 40 H 0.09 2.17 8.06 -52.49 -0.42 1.74 16 41 H 0.28 6.26 8.30 -40.82 -0.34 5.92 16 42 H 0.12 3.03 6.16 -52.49 -0.32 2.71 16 43 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 379.27 15.07 5.72 5.72 Total: -1.00 -32.28 379.27 -11.24 -43.52 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -6.07 Total: 7.03 kcal Atomic # 6 Polarization: -29.02 SS G_CDS: -4.48 Total: -33.51 kcal Atomic # 7 Polarization: -35.93 SS G_CDS: 0.67 Total: -35.25 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: -0.63 Total: -16.00 kcal Atomic # 14 Polarization: 17.99 SS G_CDS: -5.03 Total: 12.96 kcal Atomic # 16 Polarization: 16.94 SS G_CDS: -1.41 Total: 15.53 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.28 -11.24 -43.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000432636837.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.103 kcal (2) G-P(sol) polarization free energy of solvation -32.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds