Wall clock time and date at job start Tue Mar 31 2020 17:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47651 * 2 1 4 4 N 1.46505 * 109.47161 * 239.99659 * 2 1 3 5 5 N 1.40451 * 126.82002 * 59.68883 * 4 2 1 6 6 C 1.30714 * 106.78975 * 179.88869 * 5 4 2 7 7 N 1.33244 * 108.94617 * 0.37592 * 6 5 4 8 8 C 1.30824 * 109.82870 * 359.75429 * 7 6 5 9 9 C 1.50704 * 125.95857 * 180.02562 * 8 7 6 10 10 S 1.81402 * 109.46999 * 269.95670 * 9 8 7 11 11 O 1.42100 * 109.47130 * 296.38690 * 10 9 8 12 12 C 1.81401 * 102.99779 * 179.97438 * 10 9 8 13 13 C 1.50705 * 109.46992 * 179.97438 * 12 10 9 14 14 C 1.38629 * 119.75234 * 269.73156 * 13 12 10 15 15 C 1.37617 * 120.25089 * 179.72379 * 14 13 12 16 16 C 1.40724 * 119.74198 * 0.56432 * 15 14 13 17 17 C 1.41398 * 120.24362 * 179.68615 * 16 15 14 18 18 H 1.07994 * 119.99916 * 24.40611 * 17 16 15 19 19 C 1.39940 * 119.99653 * 204.40774 * 17 16 15 20 20 N 1.30825 * 120.00278 * 17.86448 * 19 17 16 21 21 Si 1.86805 * 119.99931 * 197.86677 * 19 17 16 22 22 H 1.48501 * 109.46883 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47250 * 119.99694 * 21 19 17 24 24 H 1.48497 * 109.46923 * 240.00123 * 21 19 17 25 25 C 1.40716 * 119.50689 * 359.70691 * 16 15 14 26 26 C 1.37612 * 119.75071 * 0.02562 * 25 16 15 27 27 H 1.09003 * 109.46970 * 60.00239 * 1 2 3 28 28 H 1.09005 * 109.47390 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46985 * 300.00410 * 1 2 3 30 30 H 1.09005 * 109.47549 * 120.00249 * 2 1 3 31 31 H 1.09002 * 109.46925 * 59.99365 * 3 2 1 32 32 H 1.08992 * 109.47317 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.46428 * 300.00342 * 3 2 1 34 34 H 1.08003 * 125.52139 * 180.12646 * 6 5 4 35 35 H 1.08999 * 109.47374 * 29.95612 * 9 8 7 36 36 H 1.09002 * 109.46999 * 149.95906 * 9 8 7 37 37 H 1.08997 * 109.47310 * 299.99590 * 12 10 9 38 38 H 1.08997 * 109.46966 * 60.00457 * 12 10 9 39 39 H 1.08001 * 119.87599 * 359.97270 * 14 13 12 40 40 H 1.08000 * 120.13211 * 180.27811 * 15 14 13 41 41 H 0.97003 * 119.99731 * 180.02562 * 20 19 17 42 42 H 1.08002 * 120.12014 * 179.97438 * 25 16 15 43 43 H 1.07996 * 119.87613 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6907 -1.1962 5 7 1.7639 -0.3415 -2.5326 6 6 2.3883 -1.2162 -3.2768 7 7 3.0083 -2.0921 -2.4870 8 6 2.7941 -1.7879 -1.2328 9 6 3.3251 -2.5365 -0.0375 10 16 2.1415 -3.8241 0.4442 11 8 0.9239 -3.2182 0.8559 12 6 2.9439 -4.6020 1.8730 13 6 2.0693 -5.7114 2.3979 14 6 1.1243 -5.4387 3.3749 15 6 0.3164 -6.4428 3.8575 16 6 0.4605 -7.7528 3.3639 17 6 -0.3595 -8.7938 3.8570 18 1 -1.3223 -8.5643 4.2890 19 6 0.0766 -10.1216 3.7851 20 7 1.3445 -10.3845 3.5982 21 14 -1.1516 -11.5187 3.9560 22 1 -2.5123 -10.9595 4.1588 23 1 -1.1348 -12.3462 2.7230 24 1 -0.7842 -12.3609 5.1225 25 6 1.4269 -8.0189 2.3763 26 6 2.2201 -6.9982 1.9044 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4424 -0.0005 33 1 1.6766 1.9562 -0.8900 34 1 2.3966 -1.2292 -4.3567 35 1 4.2796 -2.9973 -0.2919 36 1 3.4657 -1.8436 0.7921 37 1 3.9078 -5.0111 1.5704 38 1 3.0944 -3.8577 2.6550 39 1 1.0190 -4.4336 3.7559 40 1 -0.4222 -6.2273 4.6154 41 1 1.6466 -11.3049 3.5481 42 1 1.5462 -9.0207 1.9908 43 1 2.9621 -7.2001 1.1462 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000432636837.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:13 Heat of formation + Delta-G solvation = 42.413549 kcal Electronic energy + Delta-G solvation = -25384.107697 eV Core-core repulsion = 21749.557502 eV Total energy + Delta-G solvation = -3634.550195 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.15074 -39.45506 -37.20317 -36.74731 -35.82431 -33.72853 -32.98698 -31.99559 -31.17019 -29.51425 -28.95386 -28.36350 -25.74510 -24.53443 -22.91032 -22.32047 -21.86599 -21.12153 -19.22932 -18.65878 -18.17330 -17.21812 -17.15281 -16.42238 -15.98503 -15.93410 -15.73425 -15.69649 -15.41724 -15.19495 -14.99712 -14.46719 -14.29926 -14.24917 -13.80984 -13.76369 -13.60095 -13.34681 -13.30549 -13.02229 -12.99249 -12.73723 -12.68573 -12.56197 -12.30966 -12.22280 -12.14589 -11.66435 -11.44879 -11.26198 -11.03116 -11.01297 -10.75400 -10.50793 -9.42674 -9.35501 -8.91148 -8.63662 -6.32204 0.03238 0.75861 1.06698 1.16029 1.25937 1.39589 1.50664 1.54007 1.76263 1.99865 2.21860 2.69986 2.75333 3.12766 3.31569 3.65493 3.75032 3.77497 3.89717 3.93542 4.10946 4.29682 4.36820 4.46777 4.51119 4.51368 4.62417 4.63540 4.65739 4.76298 4.97087 5.03143 5.08262 5.09137 5.16054 5.28081 5.36214 5.46089 5.50082 5.69989 5.77697 5.96850 6.09943 6.18307 6.39259 6.70069 6.93900 7.02809 7.06240 8.32293 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.023761 B = 0.002454 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.100634 B =11407.940691 C =11708.409029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.145 3.855 3 C -0.150 4.150 4 N -0.372 5.372 5 N -0.342 5.342 6 C 0.192 3.808 7 N -0.550 5.550 8 C 0.287 3.713 9 C -0.382 4.382 10 S 1.277 4.723 11 O -0.883 6.883 12 C -0.361 4.361 13 C -0.196 4.196 14 C -0.089 4.089 15 C -0.251 4.251 16 C 0.080 3.920 17 C -0.501 4.501 18 H 0.068 0.932 19 C 0.039 3.961 20 N -0.817 5.817 21 Si 0.980 3.020 22 H -0.265 1.265 23 H -0.259 1.259 24 H -0.265 1.265 25 C -0.188 4.188 26 C -0.089 4.089 27 H 0.064 0.936 28 H 0.042 0.958 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.251 0.749 35 H 0.188 0.812 36 H 0.117 0.883 37 H 0.157 0.843 38 H 0.086 0.914 39 H 0.094 0.906 40 H 0.085 0.915 41 H 0.291 0.709 42 H 0.110 0.890 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.469 14.631 -9.777 19.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.043 3.957 3 C -0.208 4.208 4 N -0.164 5.164 5 N -0.170 5.170 6 C -0.110 4.110 7 N -0.279 5.279 8 C 0.011 3.989 9 C -0.518 4.518 10 S 1.477 4.523 11 O -0.878 6.878 12 C -0.499 4.499 13 C -0.199 4.199 14 C -0.109 4.109 15 C -0.271 4.271 16 C 0.077 3.923 17 C -0.530 4.530 18 H 0.086 0.914 19 C -0.177 4.177 20 N -0.443 5.443 21 Si 0.800 3.200 22 H -0.188 1.188 23 H -0.183 1.183 24 H -0.189 1.189 25 C -0.208 4.208 26 C -0.108 4.108 27 H 0.083 0.917 28 H 0.061 0.939 29 H 0.112 0.888 30 H 0.119 0.881 31 H 0.118 0.882 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.267 0.733 35 H 0.205 0.795 36 H 0.136 0.864 37 H 0.175 0.825 38 H 0.104 0.896 39 H 0.112 0.888 40 H 0.103 0.897 41 H 0.102 0.898 42 H 0.128 0.872 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 6.515 14.697 -10.550 19.229 hybrid contribution -0.498 0.733 2.351 2.513 sum 6.017 15.431 -8.199 18.481 Atomic orbital electron populations 1.22037 0.93007 1.02330 1.03760 1.21603 0.96238 0.94995 0.82863 1.22087 1.01602 0.92735 1.04380 1.50692 1.37586 1.21904 1.06241 1.77924 1.25987 1.26052 0.87053 1.26707 0.92870 0.88783 1.02636 1.70476 1.28375 1.29775 0.99303 1.23566 0.92462 0.87898 0.94977 1.26584 1.16306 1.12678 0.96264 1.71257 0.80942 0.96707 1.03402 1.93026 1.35391 1.76479 1.82873 1.26235 1.07701 1.03075 1.12877 1.18704 1.02805 0.94114 1.04245 1.20661 0.96194 0.96744 0.97272 1.21100 1.05364 0.94911 1.05683 1.18014 0.92010 0.92104 0.90175 1.19845 1.03856 0.92142 1.37199 0.91409 1.26680 0.97177 1.02210 0.91606 1.69844 1.16165 1.23038 1.35206 0.85202 0.78654 0.76899 0.79211 1.18849 1.18332 1.18947 1.21388 1.00647 0.99036 0.99699 1.21021 0.98699 0.91627 0.99449 0.91653 0.93899 0.88782 0.88086 0.88204 0.91917 0.91705 0.73292 0.79470 0.86448 0.82476 0.89555 0.88797 0.89679 0.89848 0.87240 0.84112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.58 9.47 71.98 0.68 -2.90 16 2 C 0.14 3.14 3.68 44.99 0.17 3.30 16 3 C -0.15 -2.41 9.48 71.98 0.68 -1.73 16 4 N -0.37 -9.35 3.28 -318.04 -1.04 -10.39 16 5 N -0.34 -8.82 12.60 -61.24 -0.77 -9.59 16 6 C 0.19 4.28 13.03 180.76 2.36 6.63 16 7 N -0.55 -13.36 11.19 -191.78 -2.15 -15.51 16 8 C 0.29 6.85 7.24 138.23 1.00 7.86 16 9 C -0.38 -6.72 6.08 71.24 0.43 -6.29 16 10 S 1.28 31.23 13.12 -56.49 -0.74 30.48 16 11 O -0.88 -32.04 17.98 -148.98 -2.68 -34.71 16 12 C -0.36 -9.26 6.04 71.24 0.43 -8.83 16 13 C -0.20 -7.59 5.16 -19.67 -0.10 -7.69 16 14 C -0.09 -4.05 9.67 22.22 0.21 -3.83 16 15 C -0.25 -12.92 9.80 22.73 0.22 -12.70 16 16 C 0.08 4.34 5.58 -21.29 -0.12 4.22 16 17 C -0.50 -27.40 9.05 23.46 0.21 -27.19 16 18 H 0.07 3.67 7.91 -2.91 -0.02 3.65 16 19 C 0.04 1.94 5.14 85.26 0.44 2.38 16 20 N -0.82 -41.35 10.95 21.83 0.24 -41.11 16 21 Si 0.98 37.87 29.60 68.60 2.03 39.90 16 22 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 23 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 24 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 25 C -0.19 -9.41 8.70 22.73 0.20 -9.22 16 26 C -0.09 -3.61 9.67 22.22 0.21 -3.40 16 27 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.04 1.29 7.98 -2.38 -0.02 1.27 16 29 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.10 2.12 6.74 -2.38 -0.02 2.11 16 31 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 34 H 0.25 3.29 8.06 -2.91 -0.02 3.27 16 35 H 0.19 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.12 1.77 7.13 -2.39 -0.02 1.75 16 37 H 0.16 2.70 8.08 -2.39 -0.02 2.68 16 38 H 0.09 2.13 8.08 -2.39 -0.02 2.11 16 39 H 0.09 3.97 8.06 -2.91 -0.02 3.94 16 40 H 0.08 4.30 8.06 -2.91 -0.02 4.27 16 41 H 0.29 13.11 8.30 -92.71 -0.77 12.34 16 42 H 0.11 5.65 6.16 -2.91 -0.02 5.63 16 43 H 0.14 4.38 8.06 -2.91 -0.02 4.36 16 Total: -1.00 -74.89 379.27 2.93 -71.96 By element: Atomic # 1 Polarization: 27.34 SS G_CDS: 1.01 Total: 28.35 kcal Atomic # 6 Polarization: -66.40 SS G_CDS: 7.03 Total: -59.37 kcal Atomic # 7 Polarization: -72.88 SS G_CDS: -3.72 Total: -76.60 kcal Atomic # 8 Polarization: -32.04 SS G_CDS: -2.68 Total: -34.71 kcal Atomic # 14 Polarization: 37.87 SS G_CDS: 2.03 Total: 39.90 kcal Atomic # 16 Polarization: 31.23 SS G_CDS: -0.74 Total: 30.48 kcal Total: -74.89 2.93 -71.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000432636837.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.371 kcal (2) G-P(sol) polarization free energy of solvation -74.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds