Wall clock time and date at job start Tue Mar 31 2020 18:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46508 * 109.46893 * 2 1 4 4 C 1.46501 * 120.00066 * 270.00066 * 3 2 1 5 5 C 1.50699 * 109.46953 * 269.99800 * 4 3 2 6 6 H 1.08000 * 119.99964 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99872 * 179.97438 * 5 4 3 8 8 N 1.31515 * 119.99879 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 119.99880 * 0.02562 * 7 5 4 10 10 H 1.48493 * 109.47218 * 89.99813 * 9 7 5 11 11 H 1.48502 * 109.46613 * 209.99476 * 9 7 5 12 12 H 1.48497 * 109.46989 * 329.99299 * 9 7 5 13 13 C 1.34779 * 119.99668 * 89.99929 * 3 2 1 14 14 O 1.21283 * 119.99430 * 180.02562 * 13 3 2 15 15 C 1.50694 * 120.00221 * 0.02562 * 13 3 2 16 16 N 1.46501 * 109.47376 * 179.97438 * 15 13 3 17 17 C 1.46501 * 120.00058 * 270.00295 * 16 15 13 18 18 C 1.38010 * 119.99896 * 89.99564 * 16 15 13 19 19 N 1.28896 * 124.81795 * 0.02562 * 18 16 15 20 20 C 1.34811 * 117.87852 * 179.97438 * 19 18 16 21 21 C 1.41091 * 128.73366 * 179.97438 * 20 19 18 22 22 C 1.37205 * 120.43599 * 180.02562 * 21 20 19 23 23 C 1.38715 * 120.59556 * 359.97438 * 22 21 20 24 24 C 1.37720 * 119.97482 * 359.97438 * 23 22 21 25 25 C 1.39254 * 120.20452 * 0.05832 * 24 23 22 26 26 S 1.75799 * 124.81799 * 180.02562 * 18 16 15 27 27 H 1.08992 * 109.47760 * 299.99735 * 1 2 3 28 28 H 1.09001 * 109.47187 * 60.00542 * 1 2 3 29 29 H 1.09001 * 109.46795 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47864 * 240.00090 * 2 1 3 31 31 H 1.09001 * 109.47456 * 119.99936 * 2 1 3 32 32 H 1.09004 * 109.46841 * 29.99718 * 4 3 2 33 33 H 1.08998 * 109.46909 * 149.99747 * 4 3 2 34 34 H 0.96998 * 119.99563 * 180.02562 * 8 7 5 35 35 H 1.08997 * 109.47536 * 59.99778 * 15 13 3 36 36 H 1.09003 * 109.47139 * 300.00199 * 15 13 3 37 37 H 1.08997 * 109.46638 * 269.99292 * 17 16 15 38 38 H 1.09000 * 109.46725 * 29.99600 * 17 16 15 39 39 H 1.08998 * 109.46752 * 149.99520 * 17 16 15 40 40 H 1.08002 * 119.78487 * 0.03980 * 21 20 19 41 41 H 1.08002 * 119.69964 * 179.70239 * 22 21 20 42 42 H 1.08002 * 120.00890 * 179.97438 * 23 22 21 43 43 H 1.08004 * 119.89431 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8352 -1.7037 6 1 4.3428 1.2311 -1.0957 7 6 4.1490 2.3899 -2.8779 8 7 5.3912 2.1837 -3.2573 9 14 3.0125 3.4353 -3.9292 10 1 3.1159 4.8555 -3.5081 11 1 3.4056 3.3122 -5.3559 12 1 1.6129 2.9691 -3.7593 13 6 2.2428 2.0166 1.1673 14 8 2.6466 3.1603 1.1672 15 6 1.9922 1.3060 2.4723 16 7 2.3099 2.2034 3.5859 17 6 3.6650 2.2292 4.1421 18 6 1.3327 3.0244 4.1108 19 7 0.1139 3.0770 3.6947 20 6 -0.7264 3.9321 4.3112 21 6 -2.0909 4.1739 4.0464 22 6 -2.7906 5.0927 4.7872 23 6 -2.1691 5.7975 5.8076 24 6 -0.8381 5.5771 6.0845 25 6 -0.1124 4.6489 5.3423 26 16 1.5736 4.1471 5.4420 27 1 -0.3634 0.5137 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.5816 1.6877 -2.0284 33 1 2.0953 3.1411 -1.1383 34 1 5.7172 2.5742 -4.0832 35 1 2.6227 0.4188 2.5299 36 1 0.9444 1.0114 2.5302 37 1 3.7409 1.4991 4.9478 38 1 4.3834 1.9835 3.3600 39 1 3.8787 3.2244 4.5321 40 1 -2.5882 3.6320 3.2554 41 1 -3.8335 5.2718 4.5711 42 1 -2.7287 6.5189 6.3845 43 1 -0.3554 6.1270 6.8790 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000439138850.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:07 Heat of formation + Delta-G solvation = 17.917222 kcal Electronic energy + Delta-G solvation = -26099.348230 eV Core-core repulsion = 22463.735795 eV Total energy + Delta-G solvation = -3635.612435 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.29961 -40.74410 -38.67030 -37.03970 -36.37615 -34.88299 -32.02124 -31.91154 -30.78664 -30.43637 -28.98675 -27.15397 -24.90975 -24.38447 -24.03584 -23.16638 -21.72376 -19.92465 -19.51545 -19.13763 -18.27599 -18.08487 -17.49584 -17.04297 -16.36157 -16.25307 -16.16168 -15.92215 -15.29742 -15.25068 -14.93377 -14.74131 -14.65889 -14.51816 -14.24877 -13.84191 -13.62362 -13.46890 -13.30017 -13.25587 -12.97616 -12.89689 -12.70596 -12.59673 -12.41689 -12.07741 -11.91249 -11.78085 -11.76893 -11.10373 -11.03538 -10.86390 -10.62318 -10.35825 -9.44662 -9.11058 -8.62333 -8.37407 -6.41350 -0.33592 -0.03895 0.23575 0.65002 1.27830 1.31796 1.39981 1.46032 1.69327 1.75843 2.26816 2.32678 2.81937 2.96902 3.29263 3.62004 3.77387 3.95224 4.06272 4.14899 4.17193 4.27383 4.38379 4.40418 4.44415 4.50572 4.61486 4.63712 4.70438 4.76151 4.86139 4.96615 4.98376 4.98914 5.17927 5.32089 5.36562 5.43776 5.47267 5.52018 5.62822 5.81716 5.91787 6.21426 6.59279 6.67093 6.83421 7.19008 7.38459 8.79188 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014344 B = 0.003258 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.611771 B = 8593.342112 C = 8935.758205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.098 3.902 3 N -0.599 5.599 4 C 0.229 3.771 5 C -0.531 4.531 6 H 0.035 0.965 7 C 0.015 3.985 8 N -0.942 5.942 9 Si 0.941 3.059 10 H -0.281 1.281 11 H -0.271 1.271 12 H -0.243 1.243 13 C 0.483 3.517 14 O -0.589 6.589 15 C 0.123 3.877 16 N -0.563 5.563 17 C 0.089 3.911 18 C 0.376 3.624 19 N -0.579 5.579 20 C 0.103 3.897 21 C -0.110 4.110 22 C -0.089 4.089 23 C -0.120 4.120 24 C -0.067 4.067 25 C -0.221 4.221 26 S 0.054 5.946 27 H 0.054 0.946 28 H 0.042 0.958 29 H 0.097 0.903 30 H 0.077 0.923 31 H 0.102 0.898 32 H 0.045 0.955 33 H 0.008 0.992 34 H 0.269 0.731 35 H 0.144 0.856 36 H 0.124 0.876 37 H 0.101 0.899 38 H 0.078 0.922 39 H 0.068 0.932 40 H 0.131 0.869 41 H 0.164 0.836 42 H 0.169 0.831 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.826 -0.949 21.158 26.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.024 4.024 3 N -0.330 5.330 4 C 0.106 3.894 5 C -0.569 4.569 6 H 0.053 0.947 7 C -0.184 4.184 8 N -0.582 5.582 9 Si 0.764 3.236 10 H -0.207 1.207 11 H -0.196 1.196 12 H -0.166 1.166 13 C 0.270 3.730 14 O -0.469 6.469 15 C -0.006 4.006 16 N -0.280 5.280 17 C -0.053 4.053 18 C 0.001 3.999 19 N -0.306 5.306 20 C -0.016 4.016 21 C -0.132 4.132 22 C -0.109 4.109 23 C -0.141 4.141 24 C -0.090 4.090 25 C -0.340 4.340 26 S 0.304 5.696 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.116 0.884 30 H 0.096 0.904 31 H 0.120 0.880 32 H 0.063 0.937 33 H 0.026 0.974 34 H 0.078 0.922 35 H 0.161 0.839 36 H 0.141 0.859 37 H 0.119 0.881 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.149 0.851 41 H 0.182 0.818 42 H 0.186 0.814 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -14.566 -0.558 21.149 25.685 hybrid contribution -0.301 0.680 -1.474 1.651 sum -14.867 0.122 19.675 24.660 Atomic orbital electron populations 1.22156 0.94450 1.03625 1.01699 1.21823 0.95285 0.80893 1.04429 1.48079 1.64042 1.15318 1.05606 1.19229 0.95013 0.92515 0.82651 1.21520 0.96815 1.32009 1.06602 0.94681 1.25756 0.96589 0.97098 0.98918 1.70027 1.17141 1.46542 1.24514 0.85814 0.80546 0.79004 0.78204 1.20659 1.19572 1.16601 1.21849 0.77119 0.87002 0.87008 1.90638 1.47806 1.20528 1.87923 1.21568 1.05684 0.92006 0.81294 1.45669 1.08641 1.39971 1.33670 1.22082 0.79422 1.03591 1.00184 1.23943 0.89813 0.92807 0.93386 1.66191 1.02343 1.28569 1.33449 1.19203 0.95707 0.93568 0.93160 1.20864 0.89964 1.00669 1.01695 1.21330 1.01317 0.93966 0.94320 1.21459 0.93522 1.00649 0.98450 1.20654 0.94641 0.95227 0.98463 1.23720 0.96771 1.07932 1.05555 1.84475 1.08564 1.40804 1.35747 0.92701 0.93836 0.88414 0.90411 0.88003 0.93690 0.97440 0.92238 0.83858 0.85870 0.88074 0.90284 0.91344 0.85116 0.81813 0.81396 0.83532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.82 10.24 71.98 0.74 -3.08 16 2 C 0.10 2.82 5.93 86.38 0.51 3.34 16 3 N -0.60 -24.67 2.46 -826.14 -2.03 -26.70 16 4 C 0.23 11.51 4.23 85.63 0.36 11.87 16 5 C -0.53 -31.45 9.94 25.60 0.25 -31.20 16 6 H 0.03 2.28 8.06 -2.91 -0.02 2.26 16 7 C 0.01 0.88 5.47 84.65 0.46 1.34 16 8 N -0.94 -59.73 13.96 21.45 0.30 -59.43 16 9 Si 0.94 45.69 27.47 68.60 1.88 47.57 16 10 H -0.28 -13.87 7.11 99.48 0.71 -13.17 16 11 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 12 H -0.24 -10.77 6.54 99.48 0.65 -10.12 16 13 C 0.48 20.08 7.74 87.65 0.68 20.75 16 14 O -0.59 -30.87 16.01 -3.04 -0.05 -30.92 16 15 C 0.12 3.56 4.55 85.63 0.39 3.95 16 16 N -0.56 -16.55 2.45 -736.63 -1.80 -18.36 16 17 C 0.09 2.02 10.42 127.77 1.33 3.35 16 18 C 0.38 12.02 7.87 179.75 1.41 13.44 16 19 N -0.58 -19.99 9.79 -189.24 -1.85 -21.84 16 20 C 0.10 3.18 6.94 39.76 0.28 3.46 16 21 C -0.11 -2.73 10.10 22.73 0.23 -2.50 16 22 C -0.09 -1.53 9.99 22.14 0.22 -1.31 16 23 C -0.12 -1.86 10.05 22.26 0.22 -1.63 16 24 C -0.07 -1.34 10.06 22.39 0.23 -1.11 16 25 C -0.22 -6.02 6.52 22.89 0.15 -5.87 16 26 S 0.05 1.45 21.89 -56.49 -1.24 0.21 16 27 H 0.05 1.32 7.22 -2.39 -0.02 1.30 16 28 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.08 2.38 8.07 -2.39 -0.02 2.37 16 31 H 0.10 2.20 6.44 -2.39 -0.02 2.18 16 32 H 0.05 2.11 7.13 -2.38 -0.02 2.10 16 33 H 0.01 0.42 6.85 -2.39 -0.02 0.40 16 34 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 35 H 0.14 3.01 7.33 -2.39 -0.02 3.00 16 36 H 0.12 3.30 6.65 -2.39 -0.02 3.28 16 37 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.08 1.94 8.07 -2.39 -0.02 1.92 16 39 H 0.07 1.57 7.04 -2.39 -0.02 1.56 16 40 H 0.13 3.04 8.06 -2.91 -0.02 3.02 16 41 H 0.16 1.63 8.06 -2.91 -0.02 1.61 16 42 H 0.17 1.30 8.06 -2.91 -0.02 1.28 16 43 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16 Total: -1.00 -85.59 372.63 3.64 -81.95 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: 0.96 Total: 12.73 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: 7.47 Total: 14.79 kcal Atomic # 7 Polarization: -120.95 SS G_CDS: -5.39 Total: -126.34 kcal Atomic # 8 Polarization: -30.87 SS G_CDS: -0.05 Total: -30.92 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 1.88 Total: 47.57 kcal Atomic # 16 Polarization: 1.45 SS G_CDS: -1.24 Total: 0.21 kcal Total: -85.59 3.64 -81.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439138850.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.867 kcal (2) G-P(sol) polarization free energy of solvation -85.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds