Wall clock time and date at job start Tue Mar 31 2020 17:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46774 * 2 1 4 4 N 1.46506 * 109.46941 * 184.43743 * 3 2 1 5 5 N 1.40440 * 126.81715 * 275.14200 * 4 3 2 6 6 C 1.30716 * 106.79091 * 180.02562 * 5 4 3 7 7 N 1.33245 * 108.94535 * 359.97438 * 6 5 4 8 8 C 1.30828 * 109.82859 * 0.02562 * 7 6 5 9 9 C 1.50701 * 125.96160 * 180.02562 * 8 7 6 10 10 S 1.81407 * 109.46996 * 266.07969 * 9 8 7 11 11 O 1.42099 * 109.46817 * 68.92565 * 10 9 8 12 12 C 1.81395 * 103.00210 * 185.31523 * 10 9 8 13 13 C 1.50693 * 109.47202 * 179.97438 * 12 10 9 14 14 C 1.38635 * 119.75266 * 269.72924 * 13 12 10 15 15 C 1.37618 * 120.24911 * 179.72345 * 14 13 12 16 16 C 1.40714 * 119.74469 * 0.56431 * 15 14 13 17 17 C 1.41394 * 120.24641 * 179.68113 * 16 15 14 18 18 H 1.08004 * 119.99445 * 24.32499 * 17 16 15 19 19 C 1.39940 * 120.00371 * 204.32217 * 17 16 15 20 20 N 1.30827 * 119.99837 * 18.23679 * 19 17 16 21 21 Si 1.86801 * 120.00251 * 198.23086 * 19 17 16 22 22 H 1.48500 * 109.46976 * 89.99933 * 21 19 17 23 23 H 1.48499 * 109.47442 * 210.00488 * 21 19 17 24 24 H 1.48499 * 109.47069 * 329.99939 * 21 19 17 25 25 C 1.40714 * 119.51229 * 359.71406 * 16 15 14 26 26 C 1.37625 * 119.74433 * 359.97438 * 25 16 15 27 27 H 1.08994 * 109.47491 * 60.00376 * 1 2 3 28 28 H 1.08998 * 109.46724 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46819 * 300.00087 * 1 2 3 30 30 H 1.08996 * 109.47084 * 240.00275 * 2 1 3 31 31 H 1.09000 * 109.47098 * 119.99439 * 2 1 3 32 32 H 1.08998 * 109.47359 * 64.43169 * 3 2 1 33 33 H 1.09006 * 109.46895 * 304.43061 * 3 2 1 34 34 H 1.08001 * 125.53070 * 180.02562 * 6 5 4 35 35 H 1.08996 * 109.47587 * 26.07762 * 9 8 7 36 36 H 1.08997 * 109.47475 * 146.08267 * 9 8 7 37 37 H 1.09001 * 109.47530 * 300.00411 * 12 10 9 38 38 H 1.09003 * 109.46885 * 59.99928 * 12 10 9 39 39 H 1.08002 * 119.87370 * 359.97438 * 14 13 12 40 40 H 1.08003 * 120.12722 * 180.27984 * 15 14 13 41 41 H 0.97002 * 120.00112 * 179.97438 * 20 19 17 42 42 H 1.08001 * 120.13047 * 179.97438 * 25 16 15 43 43 H 1.07994 * 119.87174 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5011 1.4440 -0.1069 5 7 4.4221 1.3152 0.9456 6 6 5.6144 1.3686 0.4126 7 7 5.4927 1.5219 -0.9054 8 6 4.2266 1.5690 -1.2316 9 6 3.6773 1.7337 -2.6253 10 16 3.3608 3.4908 -2.9467 11 8 4.5968 4.1870 -3.0311 12 6 2.5657 3.4707 -4.5770 13 6 2.2343 4.8810 -4.9917 14 6 1.0032 5.4247 -4.6590 15 6 0.6921 6.7136 -5.0276 16 6 1.6245 7.4760 -5.7552 17 6 1.3133 8.7990 -6.1452 18 1 0.5803 9.3669 -5.5913 19 6 1.9549 9.3725 -7.2486 20 7 2.5575 8.6097 -8.1243 21 14 1.9510 11.2272 -7.4715 22 1 3.1366 11.8097 -6.7932 23 1 2.0000 11.5519 -8.9198 24 1 0.7132 11.7943 -6.8788 25 6 2.8688 6.9119 -6.0923 26 6 3.1609 5.6232 -5.7076 27 1 -0.3634 0.5137 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 1.7429 1.9330 0.9270 33 1 1.6132 1.9788 -0.8477 34 1 6.5471 1.2988 0.9527 35 1 4.4010 1.3568 -3.3480 36 1 2.7465 1.1742 -2.7175 37 1 3.2432 3.0268 -5.3063 38 1 1.6495 2.8823 -4.5271 39 1 0.2871 4.8359 -4.1050 40 1 -0.2659 7.1367 -4.7635 41 1 3.0019 9.0072 -8.8894 42 1 3.5917 7.4879 -6.6508 43 1 4.1154 5.1884 -5.9649 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000448107147.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:18 Heat of formation + Delta-G solvation = 57.931208 kcal Electronic energy + Delta-G solvation = -25087.687555 eV Core-core repulsion = 21453.810256 eV Total energy + Delta-G solvation = -3633.877299 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.21423 -37.70863 -36.09173 -35.42680 -34.07584 -32.79872 -32.22961 -31.34618 -29.39479 -28.58111 -27.61165 -26.68855 -24.07136 -22.73344 -21.76175 -21.11225 -20.75827 -20.05229 -17.51377 -17.39601 -17.13903 -16.19783 -15.72135 -15.44822 -15.18881 -14.90274 -14.71082 -14.40635 -14.09710 -13.87831 -13.75447 -13.54021 -13.33173 -12.99266 -12.62472 -12.54270 -12.39641 -12.05065 -11.89030 -11.84737 -11.72565 -11.57507 -11.24642 -11.17094 -11.13328 -10.69187 -10.66565 -10.32895 -10.06389 -9.85050 -9.78245 -9.50873 -9.45117 -9.16833 -8.21436 -7.55572 -7.31647 -6.86303 -4.43811 1.11112 1.77512 2.12237 2.61613 2.84172 2.94893 2.97860 3.03302 3.05954 3.19692 3.83637 3.86031 3.98974 4.20627 4.39829 4.52762 4.58600 4.64531 4.80414 4.96217 5.04327 5.25565 5.30623 5.37275 5.43553 5.51692 5.57380 5.62338 5.63008 5.81130 6.13565 6.17148 6.23096 6.31785 6.33293 6.63802 6.86888 6.96945 7.15797 7.24005 7.50364 7.71650 7.95608 7.97705 8.01120 8.18018 8.53824 8.78341 8.86227 10.07325 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.020347 B = 0.002465 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.825092 B =11356.389918 C =12002.013615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.140 4.140 3 C 0.119 3.881 4 N -0.375 5.375 5 N -0.321 5.321 6 C 0.199 3.801 7 N -0.539 5.539 8 C 0.308 3.692 9 C -0.400 4.400 10 S 1.231 4.769 11 O -0.813 6.813 12 C -0.356 4.356 13 C -0.214 4.214 14 C -0.079 4.079 15 C -0.227 4.227 16 C 0.114 3.886 17 C -0.456 4.456 18 H 0.081 0.919 19 C 0.075 3.925 20 N -0.786 5.786 21 Si 0.910 3.090 22 H -0.266 1.266 23 H -0.277 1.277 24 H -0.261 1.261 25 C -0.164 4.164 26 C -0.083 4.083 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.217 0.783 35 H 0.119 0.881 36 H 0.132 0.868 37 H 0.080 0.920 38 H 0.111 0.889 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.283 0.717 42 H 0.118 0.882 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.955 -14.472 12.568 19.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.179 4.179 3 C -0.003 4.003 4 N -0.167 5.167 5 N -0.149 5.149 6 C -0.103 4.103 7 N -0.267 5.267 8 C 0.032 3.968 9 C -0.533 4.533 10 S 1.429 4.571 11 O -0.808 6.808 12 C -0.494 4.494 13 C -0.218 4.218 14 C -0.099 4.099 15 C -0.246 4.246 16 C 0.111 3.889 17 C -0.485 4.485 18 H 0.099 0.901 19 C -0.144 4.144 20 N -0.411 5.411 21 Si 0.734 3.266 22 H -0.191 1.191 23 H -0.202 1.202 24 H -0.185 1.185 25 C -0.184 4.184 26 C -0.103 4.103 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.233 0.767 35 H 0.138 0.862 36 H 0.150 0.850 37 H 0.099 0.901 38 H 0.129 0.871 39 H 0.113 0.887 40 H 0.114 0.886 41 H 0.094 0.906 42 H 0.136 0.864 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.484 -13.863 13.528 19.882 hybrid contribution 1.343 -0.208 -1.990 2.410 sum -3.140 -14.071 11.539 18.466 Atomic orbital electron populations 1.21725 0.93825 1.02660 1.02754 1.21918 0.97043 0.95439 1.03462 1.22051 0.73594 0.99068 1.05606 1.50398 1.07597 1.54374 1.04322 1.78007 0.99383 1.26553 1.10924 1.25955 0.96941 0.98068 0.89377 1.70524 1.16861 1.24860 1.14497 1.23124 0.87277 0.96435 0.89973 1.26687 1.07125 1.26874 0.92637 1.71093 1.01952 0.81552 1.02519 1.93194 1.43867 1.59731 1.83972 1.26139 1.07676 1.01376 1.14162 1.18212 0.97863 0.93287 1.12407 1.20374 0.94603 0.95427 0.99504 1.20951 0.99287 0.94716 1.09690 1.17683 0.90209 0.92456 0.88569 1.19677 1.20276 0.98038 1.10507 0.90090 1.25975 0.93080 1.00681 0.94707 1.69825 1.25281 1.37560 1.08403 0.86280 0.80026 0.82185 0.78101 1.19134 1.20244 1.18467 1.21311 0.97648 0.94830 1.04577 1.20572 0.96808 0.95267 0.97656 0.91696 0.91966 0.92025 0.91319 0.90944 0.87912 0.87659 0.76699 0.86207 0.84961 0.90078 0.87075 0.88667 0.88564 0.90640 0.86373 0.89624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.62 9.91 37.16 0.37 -0.25 16 2 C -0.14 -0.83 6.26 -26.73 -0.17 -1.00 16 3 C 0.12 0.83 6.25 -4.04 -0.03 0.80 16 4 N -0.38 -4.28 3.64 -58.33 -0.21 -4.49 16 5 N -0.32 -4.17 12.70 29.29 0.37 -3.80 16 6 C 0.20 2.61 13.03 -91.81 -1.20 1.42 16 7 N -0.54 -8.43 11.19 -11.97 -0.13 -8.57 16 8 C 0.31 4.10 7.24 -155.70 -1.13 2.97 16 9 C -0.40 -4.40 5.94 36.01 0.21 -4.19 16 10 S 1.23 17.17 13.12 -107.50 -1.41 15.76 16 11 O -0.81 -17.32 18.14 -35.23 -0.64 -17.96 16 12 C -0.36 -5.27 6.04 36.00 0.22 -5.05 16 13 C -0.21 -4.33 5.16 -104.33 -0.54 -4.87 16 14 C -0.08 -1.56 9.67 -39.66 -0.38 -1.95 16 15 C -0.23 -5.15 9.80 -38.87 -0.38 -5.53 16 16 C 0.11 2.95 5.57 -106.83 -0.60 2.35 16 17 C -0.46 -11.71 9.05 -37.74 -0.34 -12.05 16 18 H 0.08 1.98 7.91 -52.48 -0.42 1.56 16 19 C 0.07 1.83 5.13 -17.34 -0.09 1.74 16 20 N -0.79 -20.03 10.97 55.55 0.61 -19.42 16 21 Si 0.91 18.26 29.60 -169.99 -5.03 13.23 16 22 H -0.27 -5.35 7.11 56.52 0.40 -4.94 16 23 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 24 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 25 C -0.16 -4.28 8.70 -38.87 -0.34 -4.62 16 26 C -0.08 -1.99 9.67 -39.66 -0.38 -2.37 16 27 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.11 0.46 7.57 -51.93 -0.39 0.06 16 34 H 0.22 1.96 8.06 -52.49 -0.42 1.54 16 35 H 0.12 1.43 8.14 -51.93 -0.42 1.01 16 36 H 0.13 0.85 7.83 -51.93 -0.41 0.44 16 37 H 0.08 1.24 8.08 -51.92 -0.42 0.82 16 38 H 0.11 1.18 8.08 -51.92 -0.42 0.76 16 39 H 0.10 1.43 8.06 -52.49 -0.42 1.01 16 40 H 0.10 2.01 8.06 -52.48 -0.42 1.59 16 41 H 0.28 6.54 8.30 -40.82 -0.34 6.21 16 42 H 0.12 3.22 6.16 -52.49 -0.32 2.89 16 43 H 0.09 1.99 8.06 -52.49 -0.42 1.57 16 LS Contribution 381.25 15.07 5.75 5.75 Total: -1.00 -36.00 381.25 -11.63 -47.63 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -6.16 Total: 4.46 kcal Atomic # 6 Polarization: -27.83 SS G_CDS: -4.77 Total: -32.59 kcal Atomic # 7 Polarization: -36.91 SS G_CDS: 0.64 Total: -36.27 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -0.64 Total: -17.96 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.03 Total: 13.23 kcal Atomic # 16 Polarization: 17.17 SS G_CDS: -1.41 Total: 15.76 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.00 -11.63 -47.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448107147.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.561 kcal (2) G-P(sol) polarization free energy of solvation -36.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds