Wall clock time and date at job start Tue Mar 31 2020 17:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46774 * 2 1 4 4 N 1.46506 * 109.46941 * 184.43743 * 3 2 1 5 5 N 1.40440 * 126.81715 * 275.14200 * 4 3 2 6 6 C 1.30716 * 106.79091 * 180.02562 * 5 4 3 7 7 N 1.33245 * 108.94535 * 359.97438 * 6 5 4 8 8 C 1.30828 * 109.82859 * 0.02562 * 7 6 5 9 9 C 1.50701 * 125.96160 * 180.02562 * 8 7 6 10 10 S 1.81407 * 109.46996 * 266.07969 * 9 8 7 11 11 O 1.42099 * 109.46817 * 68.92565 * 10 9 8 12 12 C 1.81395 * 103.00210 * 185.31523 * 10 9 8 13 13 C 1.50693 * 109.47202 * 179.97438 * 12 10 9 14 14 C 1.38635 * 119.75266 * 269.72924 * 13 12 10 15 15 C 1.37618 * 120.24911 * 179.72345 * 14 13 12 16 16 C 1.40714 * 119.74469 * 0.56431 * 15 14 13 17 17 C 1.41394 * 120.24641 * 179.68113 * 16 15 14 18 18 H 1.08004 * 119.99445 * 24.32499 * 17 16 15 19 19 C 1.39940 * 120.00371 * 204.32217 * 17 16 15 20 20 N 1.30827 * 119.99837 * 18.23679 * 19 17 16 21 21 Si 1.86801 * 120.00251 * 198.23086 * 19 17 16 22 22 H 1.48500 * 109.46976 * 89.99933 * 21 19 17 23 23 H 1.48499 * 109.47442 * 210.00488 * 21 19 17 24 24 H 1.48499 * 109.47069 * 329.99939 * 21 19 17 25 25 C 1.40714 * 119.51229 * 359.71406 * 16 15 14 26 26 C 1.37625 * 119.74433 * 359.97438 * 25 16 15 27 27 H 1.08994 * 109.47491 * 60.00376 * 1 2 3 28 28 H 1.08998 * 109.46724 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46819 * 300.00087 * 1 2 3 30 30 H 1.08996 * 109.47084 * 240.00275 * 2 1 3 31 31 H 1.09000 * 109.47098 * 119.99439 * 2 1 3 32 32 H 1.08998 * 109.47359 * 64.43169 * 3 2 1 33 33 H 1.09006 * 109.46895 * 304.43061 * 3 2 1 34 34 H 1.08001 * 125.53070 * 180.02562 * 6 5 4 35 35 H 1.08996 * 109.47587 * 26.07762 * 9 8 7 36 36 H 1.08997 * 109.47475 * 146.08267 * 9 8 7 37 37 H 1.09001 * 109.47530 * 300.00411 * 12 10 9 38 38 H 1.09003 * 109.46885 * 59.99928 * 12 10 9 39 39 H 1.08002 * 119.87370 * 359.97438 * 14 13 12 40 40 H 1.08003 * 120.12722 * 180.27984 * 15 14 13 41 41 H 0.97002 * 120.00112 * 179.97438 * 20 19 17 42 42 H 1.08001 * 120.13047 * 179.97438 * 25 16 15 43 43 H 1.07994 * 119.87174 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5011 1.4440 -0.1069 5 7 4.4221 1.3152 0.9456 6 6 5.6144 1.3686 0.4126 7 7 5.4927 1.5219 -0.9054 8 6 4.2266 1.5690 -1.2316 9 6 3.6773 1.7337 -2.6253 10 16 3.3608 3.4908 -2.9467 11 8 4.5968 4.1870 -3.0311 12 6 2.5657 3.4707 -4.5770 13 6 2.2343 4.8810 -4.9917 14 6 1.0032 5.4247 -4.6590 15 6 0.6921 6.7136 -5.0276 16 6 1.6245 7.4760 -5.7552 17 6 1.3133 8.7990 -6.1452 18 1 0.5803 9.3669 -5.5913 19 6 1.9549 9.3725 -7.2486 20 7 2.5575 8.6097 -8.1243 21 14 1.9510 11.2272 -7.4715 22 1 3.1366 11.8097 -6.7932 23 1 2.0000 11.5519 -8.9198 24 1 0.7132 11.7943 -6.8788 25 6 2.8688 6.9119 -6.0923 26 6 3.1609 5.6232 -5.7076 27 1 -0.3634 0.5137 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 1.7429 1.9330 0.9270 33 1 1.6132 1.9788 -0.8477 34 1 6.5471 1.2988 0.9527 35 1 4.4010 1.3568 -3.3480 36 1 2.7465 1.1742 -2.7175 37 1 3.2432 3.0268 -5.3063 38 1 1.6495 2.8823 -4.5271 39 1 0.2871 4.8359 -4.1050 40 1 -0.2659 7.1367 -4.7635 41 1 3.0019 9.0072 -8.8894 42 1 3.5917 7.4879 -6.6508 43 1 4.1154 5.1884 -5.9649 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000448107147.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:17 Heat of formation + Delta-G solvation = 35.231571 kcal Electronic energy + Delta-G solvation = -25088.671885 eV Core-core repulsion = 21453.810256 eV Total energy + Delta-G solvation = -3634.861629 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.14534 -39.44761 -36.88439 -36.65526 -35.82792 -33.70898 -32.99247 -32.94676 -31.17134 -29.62821 -29.09688 -27.29562 -25.73496 -23.41197 -22.89420 -22.53029 -22.00718 -21.33600 -19.21884 -18.60073 -18.04127 -17.22167 -17.15683 -16.51052 -16.26558 -15.95624 -15.82712 -15.69727 -15.47626 -15.30541 -14.89103 -14.54129 -14.29932 -14.20014 -13.81041 -13.73660 -13.45083 -13.34016 -13.10955 -12.94574 -12.80420 -12.67359 -12.53951 -12.39089 -12.26452 -12.22418 -11.72227 -11.58711 -11.45877 -11.25400 -11.06153 -11.02439 -10.73806 -10.49024 -9.52613 -9.32896 -8.97853 -8.65004 -6.32276 0.01844 0.71799 1.07474 1.16511 1.34799 1.36591 1.49898 1.50630 1.73586 1.96539 2.18634 2.72093 2.79323 3.04218 3.52152 3.75845 3.78117 3.96160 4.02756 4.10468 4.27916 4.32031 4.39802 4.48791 4.51024 4.66738 4.68060 4.73492 4.95175 4.95472 5.10955 5.16277 5.20154 5.24362 5.36630 5.37418 5.40915 5.44408 5.52959 5.70457 5.82733 5.95939 6.11479 6.19569 6.38295 6.71145 6.93072 7.04565 7.06165 8.30697 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.020347 B = 0.002465 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.825092 B =11356.389918 C =12002.013615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.133 4.133 3 C 0.100 3.900 4 N -0.364 5.364 5 N -0.334 5.334 6 C 0.188 3.812 7 N -0.586 5.586 8 C 0.292 3.708 9 C -0.384 4.384 10 S 1.282 4.718 11 O -0.899 6.899 12 C -0.361 4.361 13 C -0.200 4.200 14 C -0.071 4.071 15 C -0.236 4.236 16 C 0.077 3.923 17 C -0.496 4.496 18 H 0.083 0.917 19 C 0.030 3.970 20 N -0.828 5.828 21 Si 0.981 3.019 22 H -0.268 1.268 23 H -0.269 1.269 24 H -0.251 1.251 25 C -0.198 4.198 26 C -0.108 4.108 27 H 0.081 0.919 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.053 0.947 32 H 0.112 0.888 33 H 0.141 0.859 34 H 0.240 0.760 35 H 0.113 0.887 36 H 0.192 0.808 37 H 0.077 0.923 38 H 0.174 0.826 39 H 0.161 0.839 40 H 0.113 0.887 41 H 0.286 0.714 42 H 0.088 0.912 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.916 -16.739 14.094 23.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.172 4.172 3 C -0.020 4.020 4 N -0.156 5.156 5 N -0.163 5.163 6 C -0.114 4.114 7 N -0.316 5.316 8 C 0.016 3.984 9 C -0.520 4.520 10 S 1.483 4.517 11 O -0.894 6.894 12 C -0.499 4.499 13 C -0.203 4.203 14 C -0.090 4.090 15 C -0.256 4.256 16 C 0.075 3.925 17 C -0.526 4.526 18 H 0.101 0.899 19 C -0.184 4.184 20 N -0.454 5.454 21 Si 0.802 3.198 22 H -0.193 1.193 23 H -0.194 1.194 24 H -0.174 1.174 25 C -0.218 4.218 26 C -0.128 4.128 27 H 0.100 0.900 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.130 0.870 33 H 0.159 0.841 34 H 0.256 0.744 35 H 0.132 0.868 36 H 0.210 0.790 37 H 0.095 0.905 38 H 0.192 0.808 39 H 0.179 0.821 40 H 0.131 0.869 41 H 0.097 0.903 42 H 0.106 0.894 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.489 -16.093 15.045 23.269 hybrid contribution 2.256 0.128 -2.261 3.196 sum -5.233 -15.965 12.784 21.112 Atomic orbital electron populations 1.21727 0.92130 1.03029 1.03803 1.21861 0.98307 0.94405 1.02631 1.22645 0.71072 1.00404 1.07840 1.50678 1.08883 1.52759 1.03288 1.77946 0.99719 1.26663 1.11944 1.26488 0.98081 0.97901 0.88947 1.70476 1.18844 1.26273 1.15958 1.23352 0.87184 0.96872 0.91025 1.26562 1.09952 1.24129 0.91364 1.69974 0.99622 0.82053 1.00094 1.93092 1.47268 1.64277 1.84746 1.26263 1.10692 0.98491 1.14449 1.18732 0.96895 0.95359 1.09283 1.20984 0.95175 0.94558 0.98246 1.21324 0.99288 0.96049 1.08928 1.18045 0.90844 0.93445 0.90201 1.19930 1.21935 0.98972 1.11747 0.89883 1.26835 0.92369 1.05222 0.94015 1.69905 1.26810 1.39472 1.09192 0.85216 0.80062 0.76269 0.78279 1.19323 1.19368 1.17381 1.21212 0.98029 0.96069 1.06476 1.20780 0.97651 0.95153 0.99206 0.89970 0.91998 0.91683 0.91303 0.92769 0.86969 0.84138 0.74355 0.86802 0.79034 0.90461 0.80792 0.82111 0.86933 0.90345 0.89381 0.90675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.57 9.91 71.98 0.71 0.15 16 2 C -0.13 -1.06 6.26 30.60 0.19 -0.87 16 3 C 0.10 0.96 6.25 86.38 0.54 1.50 16 4 N -0.36 -7.23 3.64 -338.47 -1.23 -8.46 16 5 N -0.33 -8.16 12.70 -61.24 -0.78 -8.94 16 6 C 0.19 4.77 13.03 180.76 2.36 7.12 16 7 N -0.59 -17.75 11.19 -191.77 -2.15 -19.89 16 8 C 0.29 6.99 7.24 138.23 1.00 7.99 16 9 C -0.38 -6.79 5.94 71.24 0.42 -6.37 16 10 S 1.28 31.53 13.12 -56.49 -0.74 30.79 16 11 O -0.90 -38.25 18.14 -148.98 -2.70 -40.95 16 12 C -0.36 -9.03 6.04 71.23 0.43 -8.60 16 13 C -0.20 -7.62 5.16 -19.68 -0.10 -7.72 16 14 C -0.07 -2.50 9.67 22.22 0.21 -2.29 16 15 C -0.24 -10.46 9.80 22.73 0.22 -10.24 16 16 C 0.08 4.14 5.57 -21.29 -0.12 4.02 16 17 C -0.50 -26.65 9.05 23.46 0.21 -26.44 16 18 H 0.08 4.21 7.91 -2.91 -0.02 4.18 16 19 C 0.03 1.55 5.13 85.25 0.44 1.99 16 20 N -0.83 -44.84 10.97 21.83 0.24 -44.60 16 21 Si 0.98 38.87 29.60 68.60 2.03 40.90 16 22 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 23 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 24 H -0.25 -9.38 7.11 99.48 0.71 -8.67 16 25 C -0.20 -10.97 8.70 22.73 0.20 -10.77 16 26 C -0.11 -5.31 9.67 22.22 0.21 -5.10 16 27 H 0.08 0.06 8.14 -2.39 -0.02 0.04 16 28 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 29 H 0.06 0.22 8.14 -2.39 -0.02 0.20 16 30 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.14 0.31 7.57 -2.38 -0.02 0.29 16 34 H 0.24 4.22 8.06 -2.91 -0.02 4.20 16 35 H 0.11 2.33 8.14 -2.39 -0.02 2.32 16 36 H 0.19 1.04 7.83 -2.39 -0.02 1.02 16 37 H 0.08 2.09 8.08 -2.39 -0.02 2.07 16 38 H 0.17 2.21 8.08 -2.39 -0.02 2.19 16 39 H 0.16 3.59 8.06 -2.91 -0.02 3.56 16 40 H 0.11 4.50 8.06 -2.91 -0.02 4.47 16 41 H 0.29 14.10 8.30 -92.71 -0.77 13.33 16 42 H 0.09 5.26 6.16 -2.91 -0.02 5.24 16 43 H 0.07 3.70 8.06 -2.91 -0.02 3.68 16 Total: -1.00 -88.27 381.25 2.61 -85.65 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: 1.01 Total: 21.12 kcal Atomic # 6 Polarization: -62.56 SS G_CDS: 6.93 Total: -55.62 kcal Atomic # 7 Polarization: -77.97 SS G_CDS: -3.91 Total: -81.89 kcal Atomic # 8 Polarization: -38.25 SS G_CDS: -2.70 Total: -40.95 kcal Atomic # 14 Polarization: 38.87 SS G_CDS: 2.03 Total: 40.90 kcal Atomic # 16 Polarization: 31.53 SS G_CDS: -0.74 Total: 30.79 kcal Total: -88.27 2.61 -85.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448107147.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.886 kcal (2) G-P(sol) polarization free energy of solvation -88.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds