Wall clock time and date at job start Tue Mar 31 2020 18:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46495 * 109.47244 * 2 1 4 4 C 1.36761 * 127.14321 * 94.84644 * 3 2 1 5 5 C 1.50697 * 126.33729 * 0.02833 * 4 3 2 6 6 C 1.50704 * 109.46829 * 95.20726 * 5 4 3 7 7 C 1.38237 * 119.99763 * 84.80737 * 6 5 4 8 8 C 1.38241 * 120.00128 * 180.28188 * 7 6 5 9 9 C 1.38233 * 119.99642 * 359.48398 * 8 7 6 10 10 C 1.38234 * 120.00255 * 0.51228 * 9 8 7 11 11 C 1.38232 * 120.00369 * 264.82547 * 6 5 4 12 12 N 1.30297 * 107.32000 * 179.77273 * 4 3 2 13 13 N 1.28527 * 110.07790 * 0.22153 * 12 4 3 14 14 C 1.31281 * 109.85715 * 0.02562 * 13 12 4 15 15 S 1.76199 * 126.48647 * 179.97438 * 14 13 12 16 16 C 1.81004 * 99.99782 * 359.97438 * 15 14 13 17 17 C 1.52999 * 109.47483 * 179.97438 * 16 15 14 18 18 H 1.09004 * 109.46750 * 59.99861 * 17 16 15 19 19 O 1.42901 * 109.47115 * 300.00661 * 17 16 15 20 20 C 1.50693 * 109.47671 * 180.02562 * 17 16 15 21 21 H 1.08006 * 119.99676 * 0.02562 * 20 17 16 22 22 C 1.37878 * 120.00608 * 180.02562 * 20 17 16 23 23 N 1.31517 * 119.99576 * 0.02562 * 22 20 17 24 24 Si 1.86790 * 120.00279 * 179.97438 * 22 20 17 25 25 H 1.48499 * 109.47371 * 60.00411 * 24 22 20 26 26 H 1.48505 * 109.47084 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47527 * 300.00183 * 24 22 20 28 28 H 1.08999 * 109.47016 * 175.02361 * 1 2 3 29 29 H 1.08993 * 109.47053 * 295.02543 * 1 2 3 30 30 H 1.09006 * 109.46916 * 55.03264 * 1 2 3 31 31 H 1.09004 * 109.47119 * 240.00145 * 2 1 3 32 32 H 1.08998 * 109.47233 * 120.00408 * 2 1 3 33 33 H 1.08995 * 109.47570 * 335.21422 * 5 4 3 34 34 H 1.08996 * 109.47329 * 215.20589 * 5 4 3 35 35 H 1.07998 * 120.00011 * 0.02562 * 7 6 5 36 36 H 1.07996 * 120.00017 * 179.72430 * 8 7 6 37 37 H 1.08001 * 120.00314 * 180.24423 * 9 8 7 38 38 H 1.07999 * 120.00447 * 179.72723 * 10 9 8 39 39 H 1.08003 * 119.99808 * 0.02562 * 11 6 5 40 40 H 1.08993 * 109.47229 * 300.00255 * 16 15 14 41 41 H 1.09004 * 109.47241 * 59.99875 * 16 15 14 42 42 H 0.96700 * 113.99863 * 299.99320 * 19 17 16 43 43 H 0.96997 * 120.00448 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3804 2.1290 1.0863 5 6 2.3532 1.6841 2.5258 6 6 3.7177 1.1819 2.9222 7 6 4.6846 2.0725 3.3499 8 6 5.9381 1.6126 3.7079 9 6 6.2213 0.2609 3.6485 10 6 5.2545 -0.6298 3.2209 11 6 4.0026 -0.1692 2.8578 12 7 2.7585 3.2954 0.6456 13 7 2.6565 3.3376 -0.6350 14 6 2.2034 2.1902 -1.0842 15 16 1.8983 1.7713 -2.7682 16 6 2.3801 3.3210 -3.5699 17 6 2.1952 3.1915 -5.0831 18 1 1.1494 2.9778 -5.3043 19 8 3.0129 2.1271 -5.5736 20 6 2.5969 4.4814 -5.7506 21 1 2.9493 5.3107 -5.1550 22 6 2.5145 4.6032 -7.1215 23 7 2.0849 3.5936 -7.8466 24 14 3.0118 6.2024 -7.9487 25 1 4.4366 6.4932 -7.6478 26 1 2.8312 6.0770 -9.4174 27 1 2.1624 7.3086 -7.4387 28 1 -0.3633 -1.0238 -0.0891 29 1 -0.3633 0.4347 0.9311 30 1 -0.3633 0.5890 -0.8422 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6229 0.8839 2.6451 34 1 2.0772 2.5257 3.1611 35 1 4.4620 3.1281 3.4003 36 1 6.6949 2.3089 4.0378 37 1 7.1993 -0.0990 3.9319 38 1 5.4771 -1.6853 3.1702 39 1 3.2474 -0.8649 2.5229 40 1 1.7567 4.1328 -3.1954 41 1 3.4260 3.5345 -3.3490 42 1 3.9581 2.2504 -5.4112 43 1 2.0273 3.6790 -8.8111 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000450598037.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:08 Heat of formation + Delta-G solvation = 40.094254 kcal Electronic energy + Delta-G solvation = -25287.511540 eV Core-core repulsion = 21652.860772 eV Total energy + Delta-G solvation = -3634.650767 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.75860 -39.47227 -36.01439 -35.77140 -33.96564 -32.19955 -31.16183 -30.66630 -30.44714 -29.67083 -27.12975 -25.33374 -24.35819 -22.91057 -22.33314 -22.17513 -21.08553 -20.32926 -17.70801 -17.23213 -16.98920 -16.31268 -16.13047 -15.38407 -15.27712 -14.98322 -14.66264 -14.40808 -14.26643 -14.09706 -13.71911 -13.66425 -13.52377 -13.26008 -12.80339 -12.69321 -12.50640 -12.34765 -11.70939 -11.66564 -11.47515 -11.37052 -11.24895 -11.19634 -10.92667 -10.89833 -10.54466 -10.19140 -10.16917 -9.84903 -9.61127 -9.20823 -9.17891 -9.02994 -8.64091 -8.35214 -7.22313 -6.08260 -4.27607 1.00876 1.14768 1.48664 1.77967 2.61119 2.80106 2.96231 3.28630 3.33160 3.36578 3.49738 4.29009 4.33442 4.36054 4.43289 4.47520 4.67371 4.73474 4.78884 4.85801 4.94073 5.18865 5.19199 5.27069 5.28574 5.32911 5.35261 5.52211 5.69355 5.75746 5.80233 5.86922 5.88300 6.04297 6.11278 6.17449 6.18884 6.25969 6.32331 6.69382 6.70626 6.81187 7.51956 7.76170 8.02052 8.73579 8.82173 9.25379 9.48271 10.95924 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.017535 B = 0.002592 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.452297 B =10800.927255 C =11436.368572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.101 3.899 3 N -0.463 5.463 4 C 0.173 3.827 5 C 0.013 3.987 6 C -0.084 4.084 7 C -0.098 4.098 8 C -0.119 4.119 9 C -0.120 4.120 10 C -0.121 4.121 11 C -0.115 4.115 12 N -0.282 5.282 13 N -0.296 5.296 14 C 0.168 3.832 15 S -0.009 6.009 16 C -0.111 4.111 17 C 0.245 3.755 18 H 0.067 0.933 19 O -0.560 6.560 20 C -0.568 4.568 21 H 0.061 0.939 22 C 0.081 3.919 23 N -0.858 5.858 24 Si 0.896 3.104 25 H -0.274 1.274 26 H -0.286 1.286 27 H -0.275 1.275 28 H 0.081 0.919 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.107 0.893 35 H 0.128 0.872 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.118 0.882 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.349 0.651 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.061 -11.231 23.563 26.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.021 4.021 3 N -0.158 5.158 4 C -0.097 4.097 5 C -0.027 4.027 6 C -0.085 4.085 7 C -0.116 4.116 8 C -0.137 4.137 9 C -0.138 4.138 10 C -0.139 4.139 11 C -0.133 4.133 12 N -0.121 5.121 13 N -0.140 5.140 14 C -0.206 4.206 15 S 0.221 5.779 16 C -0.260 4.260 17 C 0.185 3.815 18 H 0.084 0.916 19 O -0.363 6.363 20 C -0.608 4.608 21 H 0.079 0.921 22 C -0.126 4.126 23 N -0.493 5.493 24 Si 0.723 3.277 25 H -0.200 1.200 26 H -0.211 1.211 27 H -0.200 1.200 28 H 0.099 0.901 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.118 0.882 32 H 0.112 0.888 33 H 0.108 0.892 34 H 0.126 0.874 35 H 0.146 0.854 36 H 0.141 0.859 37 H 0.139 0.861 38 H 0.140 0.860 39 H 0.136 0.864 40 H 0.109 0.891 41 H 0.104 0.896 42 H 0.194 0.806 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.510 -11.150 22.718 25.311 hybrid contribution 0.824 0.972 0.241 1.297 sum 1.334 -10.178 22.959 25.149 Atomic orbital electron populations 1.22171 0.93460 1.03700 1.03592 1.21927 0.96197 0.79022 1.05001 1.46463 1.50526 1.13455 1.05344 1.24599 1.03964 0.89752 0.91378 1.18882 0.94823 1.02274 0.86728 1.19627 0.95336 0.93632 0.99935 1.21134 0.92949 0.99869 0.97628 1.21192 0.96777 0.95746 0.99956 1.21190 0.99284 0.93572 0.99746 1.21111 0.93463 0.99743 0.99567 1.21015 0.97206 0.94737 1.00318 1.73884 1.17964 1.16595 1.03690 1.74750 1.19340 1.17271 1.02629 1.27368 1.04906 0.91199 0.97128 1.85841 1.82058 1.24990 0.85008 1.24903 1.04980 0.93679 1.02486 1.19244 0.93031 0.87616 0.81614 0.91574 1.86578 1.19405 1.46889 1.83395 1.21461 1.48060 0.99032 0.92255 0.92094 1.25026 0.93878 0.96347 0.97337 1.70063 1.43180 1.30076 1.05980 0.86620 0.79345 0.83574 0.78207 1.19975 1.21129 1.19993 0.90059 0.91957 0.90854 0.88214 0.88768 0.89245 0.87439 0.85420 0.85878 0.86092 0.86010 0.86369 0.89062 0.89637 0.80649 0.92712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.40 10.24 37.16 0.38 -1.02 16 2 C 0.10 0.95 6.46 -4.05 -0.03 0.93 16 3 N -0.46 -6.41 2.81 -113.54 -0.32 -6.73 16 4 C 0.17 2.41 7.30 -153.99 -1.12 1.28 16 5 C 0.01 0.12 5.60 -29.03 -0.16 -0.05 16 6 C -0.08 -0.82 5.12 -104.62 -0.54 -1.36 16 7 C -0.10 -1.00 9.72 -39.58 -0.38 -1.38 16 8 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 9 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 10 C -0.12 -1.01 10.05 -39.58 -0.40 -1.40 16 11 C -0.11 -0.99 9.68 -39.58 -0.38 -1.38 16 12 N -0.28 -5.04 12.17 32.99 0.40 -4.64 16 13 N -0.30 -5.89 11.60 30.68 0.36 -5.53 16 14 C 0.17 2.95 8.07 -88.34 -0.71 2.24 16 15 S -0.01 -0.16 21.56 -107.50 -2.32 -2.48 16 16 C -0.11 -2.35 4.87 37.16 0.18 -2.17 16 17 C 0.24 6.06 2.87 -27.89 -0.08 5.98 16 18 H 0.07 1.78 8.14 -51.93 -0.42 1.36 16 19 O -0.56 -13.94 12.32 -35.23 -0.43 -14.38 16 20 C -0.57 -15.36 8.76 -34.44 -0.30 -15.66 16 21 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 22 C 0.08 2.23 5.40 -17.82 -0.10 2.14 16 23 N -0.86 -24.84 12.84 55.43 0.71 -24.13 16 24 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 25 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 26 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 27 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 28 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.10 0.96 8.02 -51.93 -0.42 0.54 16 32 H 0.09 0.63 6.57 -51.93 -0.34 0.29 16 33 H 0.09 0.60 7.45 -51.93 -0.39 0.21 16 34 H 0.11 0.90 8.12 -51.93 -0.42 0.48 16 35 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 36 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 37 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 38 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 39 H 0.12 0.76 7.12 -52.48 -0.37 0.39 16 40 H 0.09 1.96 8.14 -51.92 -0.42 1.53 16 41 H 0.08 1.83 8.14 -51.91 -0.42 1.40 16 42 H 0.35 7.80 9.04 45.56 0.41 8.21 16 43 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 381.85 15.07 5.75 5.75 Total: -1.00 -33.47 381.85 -10.60 -44.08 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -5.30 Total: 6.79 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: -4.44 Total: -14.75 kcal Atomic # 7 Polarization: -42.18 SS G_CDS: 1.15 Total: -41.03 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: -0.43 Total: -14.38 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: -0.16 SS G_CDS: -2.32 Total: -2.48 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.47 -10.60 -44.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450598037.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.174 kcal (2) G-P(sol) polarization free energy of solvation -33.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds