Wall clock time and date at job start Tue Mar 31 2020 18:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46495 * 109.47244 * 2 1 4 4 C 1.36761 * 127.14321 * 94.84644 * 3 2 1 5 5 C 1.50697 * 126.33729 * 0.02833 * 4 3 2 6 6 C 1.50704 * 109.46829 * 95.20726 * 5 4 3 7 7 C 1.38237 * 119.99763 * 84.80737 * 6 5 4 8 8 C 1.38241 * 120.00128 * 180.28188 * 7 6 5 9 9 C 1.38233 * 119.99642 * 359.48398 * 8 7 6 10 10 C 1.38234 * 120.00255 * 0.51228 * 9 8 7 11 11 C 1.38232 * 120.00369 * 264.82547 * 6 5 4 12 12 N 1.30297 * 107.32000 * 179.77273 * 4 3 2 13 13 N 1.28527 * 110.07790 * 0.22153 * 12 4 3 14 14 C 1.31281 * 109.85715 * 0.02562 * 13 12 4 15 15 S 1.76199 * 126.48647 * 179.97438 * 14 13 12 16 16 C 1.81004 * 99.99782 * 359.97438 * 15 14 13 17 17 C 1.52999 * 109.47483 * 179.97438 * 16 15 14 18 18 H 1.09004 * 109.46750 * 59.99861 * 17 16 15 19 19 O 1.42901 * 109.47115 * 300.00661 * 17 16 15 20 20 C 1.50693 * 109.47671 * 180.02562 * 17 16 15 21 21 H 1.08006 * 119.99676 * 0.02562 * 20 17 16 22 22 C 1.37878 * 120.00608 * 180.02562 * 20 17 16 23 23 N 1.31517 * 119.99576 * 0.02562 * 22 20 17 24 24 Si 1.86790 * 120.00279 * 179.97438 * 22 20 17 25 25 H 1.48499 * 109.47371 * 60.00411 * 24 22 20 26 26 H 1.48505 * 109.47084 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47527 * 300.00183 * 24 22 20 28 28 H 1.08999 * 109.47016 * 175.02361 * 1 2 3 29 29 H 1.08993 * 109.47053 * 295.02543 * 1 2 3 30 30 H 1.09006 * 109.46916 * 55.03264 * 1 2 3 31 31 H 1.09004 * 109.47119 * 240.00145 * 2 1 3 32 32 H 1.08998 * 109.47233 * 120.00408 * 2 1 3 33 33 H 1.08995 * 109.47570 * 335.21422 * 5 4 3 34 34 H 1.08996 * 109.47329 * 215.20589 * 5 4 3 35 35 H 1.07998 * 120.00011 * 0.02562 * 7 6 5 36 36 H 1.07996 * 120.00017 * 179.72430 * 8 7 6 37 37 H 1.08001 * 120.00314 * 180.24423 * 9 8 7 38 38 H 1.07999 * 120.00447 * 179.72723 * 10 9 8 39 39 H 1.08003 * 119.99808 * 0.02562 * 11 6 5 40 40 H 1.08993 * 109.47229 * 300.00255 * 16 15 14 41 41 H 1.09004 * 109.47241 * 59.99875 * 16 15 14 42 42 H 0.96700 * 113.99863 * 299.99320 * 19 17 16 43 43 H 0.96997 * 120.00448 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3804 2.1290 1.0863 5 6 2.3532 1.6841 2.5258 6 6 3.7177 1.1819 2.9222 7 6 4.6846 2.0725 3.3499 8 6 5.9381 1.6126 3.7079 9 6 6.2213 0.2609 3.6485 10 6 5.2545 -0.6298 3.2209 11 6 4.0026 -0.1692 2.8578 12 7 2.7585 3.2954 0.6456 13 7 2.6565 3.3376 -0.6350 14 6 2.2034 2.1902 -1.0842 15 16 1.8983 1.7713 -2.7682 16 6 2.3801 3.3210 -3.5699 17 6 2.1952 3.1915 -5.0831 18 1 1.1494 2.9778 -5.3043 19 8 3.0129 2.1271 -5.5736 20 6 2.5969 4.4814 -5.7506 21 1 2.9493 5.3107 -5.1550 22 6 2.5145 4.6032 -7.1215 23 7 2.0849 3.5936 -7.8466 24 14 3.0118 6.2024 -7.9487 25 1 4.4366 6.4932 -7.6478 26 1 2.8312 6.0770 -9.4174 27 1 2.1624 7.3086 -7.4387 28 1 -0.3633 -1.0238 -0.0891 29 1 -0.3633 0.4347 0.9311 30 1 -0.3633 0.5890 -0.8422 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6229 0.8839 2.6451 34 1 2.0772 2.5257 3.1611 35 1 4.4620 3.1281 3.4003 36 1 6.6949 2.3089 4.0378 37 1 7.1993 -0.0990 3.9319 38 1 5.4771 -1.6853 3.1702 39 1 3.2474 -0.8649 2.5229 40 1 1.7567 4.1328 -3.1954 41 1 3.4260 3.5345 -3.3490 42 1 3.9581 2.2504 -5.4112 43 1 2.0273 3.6790 -8.8111 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000450598037.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:07 Heat of formation + Delta-G solvation = 20.652382 kcal Electronic energy + Delta-G solvation = -25288.354602 eV Core-core repulsion = 21652.860772 eV Total energy + Delta-G solvation = -3635.493830 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.96385 -40.12762 -37.95034 -36.81719 -34.76803 -34.30717 -31.84970 -31.78127 -31.56105 -31.21759 -28.07680 -27.30155 -25.26183 -23.75776 -23.43736 -23.18738 -22.60375 -21.35324 -19.30694 -18.75731 -17.84038 -17.36624 -17.21154 -16.71476 -16.32044 -16.16149 -16.03503 -15.93664 -15.83858 -15.41201 -14.99329 -14.32607 -14.27232 -14.18370 -14.09287 -13.53643 -13.47380 -13.34275 -13.28996 -13.17475 -12.83281 -12.76844 -12.48487 -12.40271 -12.16520 -12.09895 -11.88154 -11.86207 -11.38380 -11.31110 -11.10957 -10.84479 -10.73439 -10.36020 -9.83135 -9.72013 -8.65143 -8.18405 -6.44807 0.07933 0.31517 0.49216 0.63532 1.14451 1.42261 1.43140 1.51664 1.64246 1.70230 2.38863 2.80445 3.08042 3.42356 3.55539 3.74152 3.77733 3.97565 4.04707 4.07832 4.12750 4.18315 4.22121 4.22582 4.30297 4.36014 4.54148 4.57155 4.65512 4.69812 4.75158 4.85779 4.91494 5.02005 5.08832 5.15162 5.18806 5.48369 5.53784 5.61641 5.63712 5.63877 5.78054 5.95562 6.09704 6.63298 7.26288 7.42720 7.56705 8.85987 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.017535 B = 0.002592 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.452297 B =10800.927255 C =11436.368572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.089 3.911 3 N -0.454 5.454 4 C 0.197 3.803 5 C 0.015 3.985 6 C -0.097 4.097 7 C -0.119 4.119 8 C -0.134 4.134 9 C -0.127 4.127 10 C -0.128 4.128 11 C -0.117 4.117 12 N -0.325 5.325 13 N -0.337 5.337 14 C 0.149 3.851 15 S 0.020 5.980 16 C -0.103 4.103 17 C 0.250 3.750 18 H 0.039 0.961 19 O -0.570 6.570 20 C -0.586 4.586 21 H 0.059 0.941 22 C 0.032 3.968 23 N -0.894 5.894 24 Si 0.962 3.038 25 H -0.268 1.268 26 H -0.281 1.281 27 H -0.270 1.270 28 H 0.110 0.890 29 H 0.071 0.929 30 H 0.044 0.956 31 H 0.098 0.902 32 H 0.132 0.868 33 H 0.126 0.874 34 H 0.116 0.884 35 H 0.119 0.881 36 H 0.132 0.868 37 H 0.140 0.860 38 H 0.145 0.855 39 H 0.145 0.855 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.360 0.640 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.131 -13.037 25.328 28.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.032 4.032 3 N -0.148 5.148 4 C -0.074 4.074 5 C -0.024 4.024 6 C -0.099 4.099 7 C -0.137 4.137 8 C -0.152 4.152 9 C -0.145 4.145 10 C -0.145 4.145 11 C -0.135 4.135 12 N -0.165 5.165 13 N -0.180 5.180 14 C -0.227 4.227 15 S 0.250 5.750 16 C -0.252 4.252 17 C 0.190 3.810 18 H 0.056 0.944 19 O -0.374 6.374 20 C -0.625 4.625 21 H 0.077 0.923 22 C -0.171 4.171 23 N -0.530 5.530 24 Si 0.786 3.214 25 H -0.193 1.193 26 H -0.206 1.206 27 H -0.195 1.195 28 H 0.129 0.871 29 H 0.091 0.909 30 H 0.063 0.937 31 H 0.117 0.883 32 H 0.150 0.850 33 H 0.144 0.856 34 H 0.134 0.866 35 H 0.137 0.863 36 H 0.150 0.850 37 H 0.157 0.843 38 H 0.163 0.837 39 H 0.163 0.837 40 H 0.100 0.900 41 H 0.097 0.903 42 H 0.205 0.795 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.580 -12.965 24.502 27.727 hybrid contribution 0.824 1.415 -0.133 1.643 sum 1.404 -11.550 24.370 27.005 Atomic orbital electron populations 1.22175 0.92317 1.05114 1.02897 1.22409 0.97151 0.76737 1.06853 1.46748 1.49497 1.14599 1.04000 1.25426 1.00535 0.88483 0.92973 1.19152 0.95861 1.03848 0.83559 1.19694 0.95194 0.94279 1.00693 1.21271 0.93875 0.99864 0.98711 1.21417 0.96815 0.96663 1.00270 1.21515 1.00399 0.93311 0.99243 1.21482 0.93294 1.00959 0.98811 1.21355 0.98032 0.94554 0.99580 1.73800 1.20473 1.19145 1.03057 1.74641 1.20535 1.18888 1.03974 1.27152 1.06101 0.91861 0.97553 1.85497 1.82261 1.21873 0.85419 1.24402 1.04465 0.95707 1.00651 1.18950 0.91496 0.86738 0.83806 0.94353 1.86516 1.20263 1.46809 1.83791 1.21820 1.47882 0.99942 0.92865 0.92250 1.25840 0.93724 0.99596 0.97977 1.70178 1.44430 1.32159 1.06251 0.85578 0.79158 0.79465 0.77200 1.19305 1.20571 1.19466 0.87147 0.90950 0.93670 0.88346 0.84973 0.85593 0.86629 0.86258 0.84961 0.84251 0.83709 0.83681 0.90034 0.90256 0.79482 0.92612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.23 10.24 71.98 0.74 -1.50 16 2 C 0.09 1.40 6.46 86.38 0.56 1.95 16 3 N -0.45 -11.84 2.81 -513.14 -1.44 -13.28 16 4 C 0.20 5.20 7.30 137.63 1.01 6.20 16 5 C 0.02 0.24 5.60 29.10 0.16 0.40 16 6 C -0.10 -1.69 5.12 -19.86 -0.10 -1.79 16 7 C -0.12 -2.35 9.72 22.27 0.22 -2.13 16 8 C -0.13 -2.35 10.05 22.27 0.22 -2.12 16 9 C -0.13 -1.90 10.05 22.27 0.22 -1.68 16 10 C -0.13 -1.73 10.05 22.27 0.22 -1.51 16 11 C -0.12 -1.62 9.68 22.27 0.22 -1.41 16 12 N -0.33 -11.74 12.17 -49.52 -0.60 -12.34 16 13 N -0.34 -13.66 11.60 -56.85 -0.66 -14.32 16 14 C 0.15 5.24 8.07 179.55 1.45 6.69 16 15 S 0.02 0.73 21.56 -56.49 -1.22 -0.48 16 16 C -0.10 -4.48 4.87 71.98 0.35 -4.13 16 17 C 0.25 12.76 2.87 29.85 0.09 12.84 16 18 H 0.04 2.16 8.14 -2.38 -0.02 2.15 16 19 O -0.57 -28.94 12.32 -148.98 -1.84 -30.77 16 20 C -0.59 -32.32 8.76 25.60 0.22 -32.10 16 21 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 22 C 0.03 1.79 5.40 84.65 0.46 2.25 16 23 N -0.89 -52.55 12.84 21.45 0.28 -52.27 16 24 Si 0.96 43.43 29.54 68.60 2.03 45.46 16 25 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 26 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 27 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 28 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.04 0.88 8.14 -2.38 -0.02 0.86 16 31 H 0.10 1.62 8.02 -2.39 -0.02 1.60 16 32 H 0.13 1.08 6.57 -2.39 -0.02 1.07 16 33 H 0.13 1.09 7.45 -2.39 -0.02 1.07 16 34 H 0.12 1.71 8.12 -2.39 -0.02 1.69 16 35 H 0.12 2.42 8.06 -2.91 -0.02 2.40 16 36 H 0.13 1.91 8.06 -2.91 -0.02 1.88 16 37 H 0.14 1.47 8.06 -2.91 -0.02 1.45 16 38 H 0.15 1.24 8.06 -2.91 -0.02 1.22 16 39 H 0.15 1.12 7.12 -2.91 -0.02 1.10 16 40 H 0.08 3.66 8.14 -2.40 -0.02 3.64 16 41 H 0.08 3.51 8.14 -2.39 -0.02 3.49 16 42 H 0.36 16.34 9.04 -74.06 -0.67 15.67 16 43 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -74.75 381.85 2.93 -71.82 By element: Atomic # 1 Polarization: 23.86 SS G_CDS: 0.36 Total: 24.21 kcal Atomic # 6 Polarization: -24.05 SS G_CDS: 6.03 Total: -18.01 kcal Atomic # 7 Polarization: -89.79 SS G_CDS: -2.43 Total: -92.22 kcal Atomic # 8 Polarization: -28.94 SS G_CDS: -1.84 Total: -30.77 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 16 Polarization: 0.73 SS G_CDS: -1.22 Total: -0.48 kcal Total: -74.75 2.93 -71.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450598037.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.474 kcal (2) G-P(sol) polarization free energy of solvation -74.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds