Wall clock time and date at job start Tue Mar 31 2020 17:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47178 * 52.08473 * 3 2 1 5 5 C 1.37100 * 119.99836 * 264.39034 * 4 3 2 6 6 H 1.07997 * 119.99693 * 196.17756 * 5 4 3 7 7 C 1.38953 * 120.00189 * 16.17471 * 5 4 3 8 8 N 1.31408 * 119.99584 * 20.85320 * 7 5 4 9 9 Si 1.86797 * 120.00044 * 200.85444 * 7 5 4 10 10 H 1.48496 * 109.47255 * 84.94008 * 9 7 5 11 11 H 1.48502 * 109.46978 * 204.94567 * 9 7 5 12 12 H 1.48503 * 109.47207 * 324.94317 * 9 7 5 13 13 C 1.34775 * 120.00092 * 84.38651 * 4 3 2 14 14 O 1.21290 * 120.00188 * 179.97438 * 13 4 3 15 15 C 1.50703 * 120.00019 * 0.02562 * 13 4 3 16 16 N 1.46496 * 109.47156 * 179.97438 * 15 13 4 17 17 C 1.34781 * 120.00191 * 179.97438 * 16 15 13 18 18 O 1.21587 * 119.99458 * 359.97438 * 17 16 15 19 19 N 1.34767 * 119.99978 * 180.02562 * 17 16 15 20 20 C 1.46499 * 119.99912 * 180.02562 * 19 17 16 21 21 C 1.50700 * 109.47389 * 180.02562 * 20 19 17 22 22 C 1.38251 * 119.96837 * 269.72011 * 21 20 19 23 23 C 1.38203 * 120.02091 * 179.72208 * 22 21 20 24 24 C 1.38460 * 119.97160 * 0.57331 * 23 22 21 25 25 F 1.35104 * 120.02278 * 179.67830 * 24 23 22 26 26 C 1.38459 * 119.95250 * 359.70793 * 24 23 22 27 27 C 1.38193 * 119.97189 * 359.97438 * 26 24 23 28 28 H 4.40642 * 5.51349 * 180.02562 * 4 1 2 29 29 H 1.09000 * 109.46976 * 292.07949 * 3 2 1 30 30 H 1.09003 * 109.46531 * 172.08209 * 3 2 1 31 31 H 0.97000 * 119.99470 * 179.97438 * 8 7 5 32 32 H 1.09004 * 109.46718 * 59.99847 * 15 13 4 33 33 H 1.09000 * 109.47096 * 299.99735 * 15 13 4 34 34 H 0.97005 * 120.00234 * 0.02562 * 16 15 13 35 35 H 0.96998 * 120.00851 * 359.97438 * 19 17 16 36 36 H 1.09003 * 109.47476 * 59.99487 * 20 19 17 37 37 H 1.08997 * 109.47018 * 299.99640 * 20 19 17 38 38 H 1.07992 * 119.99029 * 359.97438 * 22 21 20 39 39 H 1.07998 * 120.01300 * 180.25843 * 23 22 21 40 40 H 1.08004 * 120.01272 * 179.97438 * 26 24 23 41 41 H 1.08002 * 119.98969 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1348 -0.8479 -1.0896 5 6 3.4733 -2.1533 -0.8428 6 1 4.0691 -2.7010 -1.5579 7 6 3.0499 -2.7715 0.3273 8 7 2.0218 -2.2907 0.9895 9 14 3.9423 -4.2861 0.9590 10 1 5.1135 -3.8681 1.7706 11 1 3.0189 -5.0900 1.7996 12 1 4.4037 -5.1045 -0.1911 13 6 3.2516 -0.3452 -2.3347 14 8 3.6566 -1.0476 -3.2368 15 6 2.8799 1.0899 -2.6059 16 7 3.0949 1.3905 -4.0234 17 6 2.8275 2.6229 -4.4991 18 8 2.4073 3.4850 -3.7517 19 7 3.0248 2.8993 -5.8033 20 6 2.7346 4.2390 -6.3202 21 6 3.0372 4.2845 -7.7958 22 6 4.2981 4.6474 -8.2314 23 6 4.5784 4.6839 -9.5842 24 6 3.5924 4.3685 -10.5037 25 9 3.8634 4.4103 -11.8266 26 6 2.3283 4.0109 -10.0664 27 6 2.0522 3.9687 -8.7130 28 1 -1.0498 0.0000 -0.0003 29 1 3.0096 -0.3855 0.9523 30 1 3.0089 1.0187 -0.1416 31 1 1.7260 -2.7225 1.8062 32 1 3.5009 1.7472 -1.9971 33 1 1.8307 1.2470 -2.3559 34 1 3.4291 0.7024 -4.6200 35 1 3.3596 2.2114 -6.3997 36 1 3.3521 4.9710 -5.7995 37 1 1.6820 4.4707 -6.1583 38 1 5.0655 4.8983 -7.5142 39 1 5.5647 4.9634 -9.9242 40 1 1.5583 3.7651 -10.7828 41 1 1.0664 3.6894 -8.3716 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490972605.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:34 Heat of formation + Delta-G solvation = -10.467372 kcal Electronic energy + Delta-G solvation = -26692.029662 eV Core-core repulsion = 22488.973202 eV Total energy + Delta-G solvation = -4203.056460 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.27016 -40.12510 -39.36134 -38.55409 -35.49241 -34.91099 -33.89420 -32.19308 -31.57063 -31.32561 -31.22092 -27.87613 -26.46406 -25.68216 -24.10612 -23.48025 -21.84191 -20.76666 -19.46039 -18.50458 -18.05096 -17.95741 -16.81971 -16.67735 -16.45152 -15.99312 -15.93260 -15.50915 -15.41329 -14.68295 -14.54967 -14.47041 -14.32153 -13.99885 -13.85171 -13.79608 -13.51313 -13.12092 -12.62587 -12.55834 -12.42614 -12.04994 -11.92561 -11.78696 -11.61052 -11.41463 -11.06538 -10.56008 -10.40406 -10.12336 -9.54180 -9.40524 -9.38589 -9.20146 -9.06442 -8.95783 -8.64143 -8.57577 -7.99556 -6.42308 -3.95465 0.61565 0.80714 2.74767 3.09544 3.20985 3.23700 3.28982 3.38393 3.58326 3.82245 3.84544 4.02701 4.11963 4.28218 4.29525 4.48182 4.50579 4.83074 4.84111 4.84884 4.97299 5.29844 5.41346 5.42386 5.51196 5.61750 5.64933 5.69635 5.78215 5.86010 6.02897 6.10793 6.26601 6.41047 6.45784 6.70103 6.73017 7.00029 7.06451 7.47844 7.90789 8.21413 8.29983 8.77532 8.78127 9.00061 9.23431 9.73664 10.57912 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.022504 B = 0.002010 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.929675 B =13925.839840 C =14626.897268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.117 4.117 3 C 0.227 3.773 4 N -0.430 5.430 5 C -0.317 4.317 6 H 0.107 0.893 7 C 0.032 3.968 8 N -0.859 5.859 9 Si 0.925 3.075 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.270 1.270 13 C 0.438 3.562 14 O -0.586 6.586 15 C 0.128 3.872 16 N -0.725 5.725 17 C 0.705 3.295 18 O -0.596 6.596 19 N -0.747 5.747 20 C 0.183 3.817 21 C -0.116 4.116 22 C -0.069 4.069 23 C -0.156 4.156 24 C 0.103 3.897 25 F -0.140 7.140 26 C -0.156 4.156 27 C -0.069 4.069 28 H 0.200 0.800 29 H 0.115 0.885 30 H 0.066 0.934 31 H 0.270 0.730 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.406 0.594 35 H 0.398 0.602 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.137 0.863 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.537 13.612 -14.938 20.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.274 4.274 2 C -0.119 4.119 3 C 0.104 3.896 4 N -0.147 5.147 5 C -0.444 4.444 6 H 0.124 0.876 7 C -0.173 4.173 8 N -0.496 5.496 9 Si 0.752 3.248 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.194 1.194 13 C 0.226 3.774 14 O -0.471 6.471 15 C 0.000 4.000 16 N -0.382 5.382 17 C 0.405 3.595 18 O -0.475 6.475 19 N -0.404 5.404 20 C 0.059 3.941 21 C -0.117 4.117 22 C -0.088 4.088 23 C -0.175 4.175 24 C 0.084 3.916 25 F -0.119 7.119 26 C -0.175 4.175 27 C -0.088 4.088 28 H 0.217 0.783 29 H 0.133 0.867 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.244 0.756 35 H 0.232 0.768 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.154 0.846 39 H 0.155 0.845 40 H 0.155 0.845 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.276 13.978 -14.501 20.181 hybrid contribution 0.282 -1.462 -0.322 1.523 sum 1.558 12.516 -14.823 19.463 Atomic orbital electron populations 1.24292 0.95404 1.04956 1.02704 1.23090 0.94291 0.96282 0.98212 1.18381 0.84443 0.92621 0.94196 1.43651 1.54939 1.11018 1.05090 1.19690 1.31436 0.87615 1.05655 0.87559 1.25333 0.95147 0.99353 0.97446 1.70092 1.20622 1.41349 1.17541 0.85958 0.79097 0.80815 0.78949 1.20155 1.21053 1.19432 1.19899 0.85478 0.88744 0.83243 1.90494 1.52045 1.61162 1.43436 1.20900 1.02365 0.95668 0.81107 1.44806 1.70626 1.11743 1.11036 1.15829 0.78880 0.82878 0.81918 1.90913 1.52776 1.46870 1.56959 1.45083 1.72921 1.13886 1.08487 1.19953 1.01971 0.84217 0.87977 1.20023 0.94202 1.01946 0.95543 1.21028 0.96286 0.96642 0.94839 1.21182 0.99594 1.03636 0.93098 1.17810 0.94647 1.01568 0.77614 1.91513 1.94410 1.94021 1.31923 1.21183 0.95831 1.03384 0.97092 1.21031 0.99679 0.96471 0.91601 0.78311 0.86685 0.91659 0.91908 0.90113 0.89693 0.75647 0.76835 0.90539 0.90544 0.84556 0.84520 0.84511 0.84546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -5.25 19.25 29.55 0.57 -4.69 16 2 C -0.12 -2.60 10.95 -37.12 -0.41 -3.00 16 3 C 0.23 4.89 4.91 -6.83 -0.03 4.86 16 4 N -0.43 -10.42 2.60 -117.93 -0.31 -10.73 16 5 C -0.32 -8.36 9.35 -14.93 -0.14 -8.50 16 6 H 0.11 2.95 7.36 -52.49 -0.39 2.56 16 7 C 0.03 0.81 4.90 -17.47 -0.09 0.72 16 8 N -0.86 -21.81 9.39 55.50 0.52 -21.29 16 9 Si 0.93 19.81 29.60 -169.99 -5.03 14.78 16 10 H -0.28 -5.78 7.11 56.52 0.40 -5.37 16 11 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 12 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 13 C 0.44 10.12 7.64 -10.98 -0.08 10.03 16 14 O -0.59 -14.93 15.30 5.55 0.08 -14.85 16 15 C 0.13 2.44 4.76 -5.19 -0.02 2.41 16 16 N -0.72 -12.22 5.53 -66.42 -0.37 -12.58 16 17 C 0.71 11.20 8.57 -86.92 -0.74 10.46 16 18 O -0.60 -11.43 16.34 5.29 0.09 -11.35 16 19 N -0.75 -8.52 5.55 -66.42 -0.37 -8.89 16 20 C 0.18 1.74 5.80 -5.19 -0.03 1.71 16 21 C -0.12 -0.91 5.25 -104.62 -0.55 -1.45 16 22 C -0.07 -0.50 9.70 -39.59 -0.38 -0.88 16 23 C -0.16 -1.15 10.03 -39.51 -0.40 -1.54 16 24 C 0.10 0.86 7.30 -39.42 -0.29 0.57 16 25 F -0.14 -1.31 17.27 2.25 0.04 -1.27 16 26 C -0.16 -1.16 10.03 -39.52 -0.40 -1.56 16 27 C -0.07 -0.50 9.70 -39.60 -0.38 -0.89 16 28 H 0.20 3.35 7.80 -54.10 -0.42 2.93 16 29 H 0.12 2.60 6.34 -51.93 -0.33 2.27 16 30 H 0.07 1.18 6.67 -51.93 -0.35 0.84 16 31 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 32 H 0.08 1.45 7.42 -51.93 -0.39 1.06 16 33 H 0.09 1.68 7.52 -51.93 -0.39 1.29 16 34 H 0.41 6.63 7.45 -40.82 -0.30 6.32 16 35 H 0.40 3.81 8.48 -40.82 -0.35 3.47 16 36 H 0.08 0.74 8.08 -51.93 -0.42 0.32 16 37 H 0.08 0.75 8.08 -51.93 -0.42 0.34 16 38 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 39 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 40 H 0.14 0.80 8.06 -52.48 -0.42 0.38 16 41 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 LS Contribution 366.78 15.07 5.53 5.53 Total: -1.00 -31.98 366.78 -7.77 -39.75 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -4.58 Total: 12.66 kcal Atomic # 6 Polarization: 11.62 SS G_CDS: -3.38 Total: 8.25 kcal Atomic # 7 Polarization: -52.97 SS G_CDS: -0.52 Total: -53.49 kcal Atomic # 8 Polarization: -26.37 SS G_CDS: 0.17 Total: -26.20 kcal Atomic # 9 Polarization: -1.31 SS G_CDS: 0.04 Total: -1.27 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.03 Total: 14.78 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.98 -7.77 -39.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490972605.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.286 kcal (2) G-P(sol) polarization free energy of solvation -31.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds