Wall clock time and date at job start Tue Mar 31 2020 17:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47178 * 52.08473 * 3 2 1 5 5 C 1.37100 * 119.99836 * 264.39034 * 4 3 2 6 6 H 1.07997 * 119.99693 * 196.17756 * 5 4 3 7 7 C 1.38953 * 120.00189 * 16.17471 * 5 4 3 8 8 N 1.31408 * 119.99584 * 20.85320 * 7 5 4 9 9 Si 1.86797 * 120.00044 * 200.85444 * 7 5 4 10 10 H 1.48496 * 109.47255 * 84.94008 * 9 7 5 11 11 H 1.48502 * 109.46978 * 204.94567 * 9 7 5 12 12 H 1.48503 * 109.47207 * 324.94317 * 9 7 5 13 13 C 1.34775 * 120.00092 * 84.38651 * 4 3 2 14 14 O 1.21290 * 120.00188 * 179.97438 * 13 4 3 15 15 C 1.50703 * 120.00019 * 0.02562 * 13 4 3 16 16 N 1.46496 * 109.47156 * 179.97438 * 15 13 4 17 17 C 1.34781 * 120.00191 * 179.97438 * 16 15 13 18 18 O 1.21587 * 119.99458 * 359.97438 * 17 16 15 19 19 N 1.34767 * 119.99978 * 180.02562 * 17 16 15 20 20 C 1.46499 * 119.99912 * 180.02562 * 19 17 16 21 21 C 1.50700 * 109.47389 * 180.02562 * 20 19 17 22 22 C 1.38251 * 119.96837 * 269.72011 * 21 20 19 23 23 C 1.38203 * 120.02091 * 179.72208 * 22 21 20 24 24 C 1.38460 * 119.97160 * 0.57331 * 23 22 21 25 25 F 1.35104 * 120.02278 * 179.67830 * 24 23 22 26 26 C 1.38459 * 119.95250 * 359.70793 * 24 23 22 27 27 C 1.38193 * 119.97189 * 359.97438 * 26 24 23 28 28 H 4.40642 * 5.51349 * 180.02562 * 4 1 2 29 29 H 1.09000 * 109.46976 * 292.07949 * 3 2 1 30 30 H 1.09003 * 109.46531 * 172.08209 * 3 2 1 31 31 H 0.97000 * 119.99470 * 179.97438 * 8 7 5 32 32 H 1.09004 * 109.46718 * 59.99847 * 15 13 4 33 33 H 1.09000 * 109.47096 * 299.99735 * 15 13 4 34 34 H 0.97005 * 120.00234 * 0.02562 * 16 15 13 35 35 H 0.96998 * 120.00851 * 359.97438 * 19 17 16 36 36 H 1.09003 * 109.47476 * 59.99487 * 20 19 17 37 37 H 1.08997 * 109.47018 * 299.99640 * 20 19 17 38 38 H 1.07992 * 119.99029 * 359.97438 * 22 21 20 39 39 H 1.07998 * 120.01300 * 180.25843 * 23 22 21 40 40 H 1.08004 * 120.01272 * 179.97438 * 26 24 23 41 41 H 1.08002 * 119.98969 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1348 -0.8479 -1.0896 5 6 3.4733 -2.1533 -0.8428 6 1 4.0691 -2.7010 -1.5579 7 6 3.0499 -2.7715 0.3273 8 7 2.0218 -2.2907 0.9895 9 14 3.9423 -4.2861 0.9590 10 1 5.1135 -3.8681 1.7706 11 1 3.0189 -5.0900 1.7996 12 1 4.4037 -5.1045 -0.1911 13 6 3.2516 -0.3452 -2.3347 14 8 3.6566 -1.0476 -3.2368 15 6 2.8799 1.0899 -2.6059 16 7 3.0949 1.3905 -4.0234 17 6 2.8275 2.6229 -4.4991 18 8 2.4073 3.4850 -3.7517 19 7 3.0248 2.8993 -5.8033 20 6 2.7346 4.2390 -6.3202 21 6 3.0372 4.2845 -7.7958 22 6 4.2981 4.6474 -8.2314 23 6 4.5784 4.6839 -9.5842 24 6 3.5924 4.3685 -10.5037 25 9 3.8634 4.4103 -11.8266 26 6 2.3283 4.0109 -10.0664 27 6 2.0522 3.9687 -8.7130 28 1 -1.0498 0.0000 -0.0003 29 1 3.0096 -0.3855 0.9523 30 1 3.0089 1.0187 -0.1416 31 1 1.7260 -2.7225 1.8062 32 1 3.5009 1.7472 -1.9971 33 1 1.8307 1.2470 -2.3559 34 1 3.4291 0.7024 -4.6200 35 1 3.3596 2.2114 -6.3997 36 1 3.3521 4.9710 -5.7995 37 1 1.6820 4.4707 -6.1583 38 1 5.0655 4.8983 -7.5142 39 1 5.5647 4.9634 -9.9242 40 1 1.5583 3.7651 -10.7828 41 1 1.0664 3.6894 -8.3716 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490972605.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:33 Heat of formation + Delta-G solvation = -30.711933 kcal Electronic energy + Delta-G solvation = -26692.907532 eV Core-core repulsion = 22488.973202 eV Total energy + Delta-G solvation = -4203.934330 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -49.93034 -41.32175 -40.48335 -39.89653 -37.25546 -35.94896 -35.35952 -34.01649 -33.06340 -32.12538 -32.07199 -29.35737 -28.11395 -26.79170 -25.74740 -24.03982 -22.52912 -21.98462 -21.14765 -19.79841 -19.70670 -18.67851 -18.38374 -17.67631 -17.57745 -17.47807 -16.83468 -16.62462 -16.47347 -16.19299 -16.05077 -15.92590 -15.27432 -15.14741 -14.83884 -14.71162 -14.50599 -14.40654 -14.17149 -13.76554 -13.68363 -13.48911 -13.26078 -13.21941 -12.77489 -12.59244 -12.46113 -12.15383 -11.97387 -11.46939 -11.21530 -11.11131 -10.69186 -10.47074 -10.39088 -10.09082 -9.88519 -9.81281 -9.70027 -8.33211 -5.94200 -0.01038 0.25747 1.37189 1.45120 1.54254 1.64922 1.82960 2.10277 2.14411 2.33241 2.38773 2.59408 3.03472 3.11107 3.25515 3.40373 3.61164 3.74534 3.82276 3.96139 3.97388 4.20909 4.30373 4.34108 4.45633 4.65049 4.67618 4.70685 4.97525 4.97737 4.98280 5.13989 5.20911 5.31167 5.41767 5.44213 5.47538 5.50781 5.86841 5.94260 6.02078 6.38812 7.03083 7.08643 7.13346 7.35223 7.53923 7.87375 8.64912 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.022504 B = 0.002010 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.929675 B =13925.839840 C =14626.897268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.156 4.156 3 C 0.229 3.771 4 N -0.441 5.441 5 C -0.350 4.350 6 H 0.082 0.918 7 C 0.003 3.997 8 N -0.870 5.870 9 Si 0.988 3.012 10 H -0.265 1.265 11 H -0.279 1.279 12 H -0.277 1.277 13 C 0.434 3.566 14 O -0.617 6.617 15 C 0.144 3.856 16 N -0.726 5.726 17 C 0.706 3.294 18 O -0.629 6.629 19 N -0.729 5.729 20 C 0.184 3.816 21 C -0.118 4.118 22 C -0.069 4.069 23 C -0.158 4.158 24 C 0.087 3.913 25 F -0.149 7.149 26 C -0.159 4.159 27 C -0.070 4.070 28 H 0.232 0.768 29 H 0.101 0.899 30 H 0.097 0.903 31 H 0.273 0.727 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.409 0.591 35 H 0.409 0.591 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.150 0.850 39 H 0.151 0.849 40 H 0.150 0.850 41 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.349 14.167 -15.089 20.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C -0.158 4.158 3 C 0.106 3.894 4 N -0.158 5.158 5 C -0.477 4.477 6 H 0.100 0.900 7 C -0.201 4.201 8 N -0.506 5.506 9 Si 0.811 3.189 10 H -0.190 1.190 11 H -0.205 1.205 12 H -0.202 1.202 13 C 0.223 3.777 14 O -0.505 6.505 15 C 0.015 3.985 16 N -0.384 5.384 17 C 0.406 3.594 18 O -0.510 6.510 19 N -0.385 5.385 20 C 0.061 3.939 21 C -0.119 4.119 22 C -0.087 4.087 23 C -0.177 4.177 24 C 0.067 3.933 25 F -0.128 7.128 26 C -0.177 4.177 27 C -0.088 4.088 28 H 0.249 0.751 29 H 0.119 0.881 30 H 0.115 0.885 31 H 0.083 0.917 32 H 0.113 0.887 33 H 0.099 0.901 34 H 0.247 0.753 35 H 0.244 0.756 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.168 0.832 39 H 0.169 0.831 40 H 0.168 0.832 41 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 1.087 14.557 -14.680 20.703 hybrid contribution 0.290 -1.603 -0.332 1.662 sum 1.377 12.955 -15.012 19.876 Atomic orbital electron populations 1.25156 0.96409 1.03485 1.01112 1.23420 0.95005 0.97678 0.99681 1.18428 0.84633 0.93585 0.92730 1.43818 1.55043 1.10789 1.06162 1.19610 1.32813 0.88970 1.06345 0.90012 1.26010 0.95382 1.01772 0.96917 1.70182 1.20818 1.42150 1.17475 0.85038 0.78268 0.77505 0.78039 1.19005 1.20463 1.20158 1.20517 0.84398 0.90139 0.82617 1.90460 1.53234 1.62462 1.44310 1.20631 1.02128 0.92938 0.82762 1.44733 1.71047 1.12358 1.10211 1.15906 0.78564 0.81983 0.82956 1.90891 1.54330 1.47611 1.58204 1.45014 1.71539 1.15016 1.06970 1.20028 1.01929 0.82948 0.89000 1.19888 0.94754 1.02777 0.94444 1.21186 0.96361 0.96089 0.95068 1.21367 1.00122 1.03191 0.93000 1.18075 0.95412 1.02339 0.77435 1.91490 1.94515 1.94184 1.32591 1.21357 0.95925 1.03010 0.97455 1.21175 1.00133 0.96071 0.91466 0.75110 0.88130 0.88542 0.91657 0.88715 0.90126 0.75325 0.75559 0.90455 0.90705 0.83183 0.83107 0.83211 0.83391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.66 19.25 74.32 1.43 -8.22 16 2 C -0.16 -6.82 10.95 31.13 0.34 -6.48 16 3 C 0.23 9.84 4.91 84.58 0.42 10.25 16 4 N -0.44 -21.65 2.60 -645.40 -1.68 -23.33 16 5 C -0.35 -18.84 9.35 84.04 0.79 -18.06 16 6 H 0.08 4.70 7.36 -2.91 -0.02 4.68 16 7 C 0.00 0.16 4.90 84.93 0.42 0.58 16 8 N -0.87 -43.90 9.39 21.66 0.20 -43.70 16 9 Si 0.99 40.56 29.60 68.60 2.03 42.59 16 10 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 11 H -0.28 -11.16 7.11 99.48 0.71 -10.45 16 12 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 13 C 0.43 20.22 7.64 87.66 0.67 20.89 16 14 O -0.62 -32.05 15.30 -3.06 -0.05 -32.09 16 15 C 0.14 5.42 4.76 85.63 0.41 5.83 16 16 N -0.73 -23.95 5.53 -482.30 -2.67 -26.62 16 17 C 0.71 21.63 8.57 179.06 1.53 23.16 16 18 O -0.63 -23.47 16.34 -3.99 -0.07 -23.54 16 19 N -0.73 -15.52 5.55 -482.31 -2.68 -18.20 16 20 C 0.18 3.20 5.80 85.63 0.50 3.70 16 21 C -0.12 -1.62 5.25 -19.86 -0.10 -1.73 16 22 C -0.07 -0.85 9.70 22.26 0.22 -0.64 16 23 C -0.16 -2.07 10.03 22.31 0.22 -1.85 16 24 C 0.09 1.34 7.30 22.38 0.16 1.50 16 25 F -0.15 -2.67 17.27 44.97 0.78 -1.89 16 26 C -0.16 -2.13 10.03 22.31 0.22 -1.90 16 27 C -0.07 -0.90 9.70 22.26 0.22 -0.68 16 28 H 0.23 7.17 7.80 -4.43 -0.03 7.13 16 29 H 0.10 4.57 6.34 -2.39 -0.02 4.56 16 30 H 0.10 3.43 6.67 -2.39 -0.02 3.41 16 31 H 0.27 13.10 8.31 -92.71 -0.77 12.33 16 32 H 0.10 3.30 7.42 -2.38 -0.02 3.28 16 33 H 0.08 3.14 7.52 -2.39 -0.02 3.12 16 34 H 0.41 13.15 7.45 -92.70 -0.69 12.46 16 35 H 0.41 7.13 8.48 -92.71 -0.79 6.35 16 36 H 0.08 1.38 8.08 -2.39 -0.02 1.36 16 37 H 0.07 1.37 8.08 -2.39 -0.02 1.35 16 38 H 0.15 1.42 8.06 -2.91 -0.02 1.40 16 39 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 40 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 41 H 0.15 1.52 8.06 -2.91 -0.02 1.49 16 Total: -1.00 -68.48 366.78 2.93 -65.56 By element: Atomic # 1 Polarization: 35.24 SS G_CDS: -0.38 Total: 34.86 kcal Atomic # 6 Polarization: 18.91 SS G_CDS: 7.43 Total: 26.35 kcal Atomic # 7 Polarization: -105.02 SS G_CDS: -6.82 Total: -111.84 kcal Atomic # 8 Polarization: -55.52 SS G_CDS: -0.11 Total: -55.63 kcal Atomic # 9 Polarization: -2.67 SS G_CDS: 0.78 Total: -1.89 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 2.03 Total: 42.59 kcal Total: -68.48 2.93 -65.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490972605.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.845 kcal (2) G-P(sol) polarization free energy of solvation -68.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds