Wall clock time and date at job start Tue Mar 31 2020 18:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47039 * 2 1 4 4 C 1.47196 * 109.47500 * 239.99773 * 2 1 3 5 5 N 2.60799 * 109.47276 * 239.99853 * 2 1 3 6 6 C 1.52996 * 109.47247 * 119.99337 * 2 1 3 7 7 N 1.46897 * 109.47490 * 295.00262 * 6 2 1 8 8 C 1.46893 * 111.00171 * 293.95317 * 7 6 2 9 9 C 1.46898 * 111.00238 * 169.99571 * 7 6 2 10 10 C 1.50700 * 109.47297 * 189.99854 * 9 7 6 11 11 O 1.21291 * 119.99922 * 0.02562 * 10 9 7 12 12 N 1.34777 * 120.00078 * 180.02562 * 10 9 7 13 13 C 1.39938 * 120.00194 * 185.74301 * 12 10 9 14 14 C 1.38684 * 120.11224 * 24.75523 * 13 12 10 15 15 C 1.38220 * 120.01894 * 180.02562 * 14 13 12 16 16 C 1.38390 * 120.24981 * 359.95655 * 15 14 13 17 17 C 1.38085 * 120.23045 * 0.02562 * 16 15 14 18 18 C 1.38994 * 119.97692 * 0.02643 * 17 16 15 19 19 S 1.76195 * 120.12502 * 179.97438 * 18 17 16 20 20 C 1.76203 * 100.00020 * 5.61963 * 19 18 17 21 21 H 1.07993 * 119.99677 * 354.96047 * 20 19 18 22 22 C 1.38687 * 119.99706 * 174.96929 * 20 19 18 23 23 N 1.31646 * 120.00649 * 359.97438 * 22 20 19 24 24 Si 1.86808 * 119.99638 * 179.97438 * 22 20 19 25 25 H 1.48493 * 109.47176 * 59.99320 * 24 22 20 26 26 H 1.48497 * 109.47029 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.46619 * 299.99521 * 24 22 20 28 28 H 1.09007 * 109.47383 * 300.00390 * 1 2 3 29 29 H 1.08998 * 109.47396 * 60.00360 * 1 2 3 30 30 H 1.09000 * 109.47438 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47385 * 175.00007 * 6 2 1 32 32 H 1.09000 * 109.46744 * 55.00296 * 6 2 1 33 33 H 1.09007 * 109.47111 * 296.04758 * 8 7 6 34 34 H 1.08999 * 109.47382 * 56.04163 * 8 7 6 35 35 H 1.08997 * 109.47542 * 176.04381 * 8 7 6 36 36 H 1.08998 * 109.47032 * 70.00128 * 9 7 6 37 37 H 1.08997 * 109.47446 * 310.00225 * 9 7 6 38 38 H 0.97001 * 119.99879 * 5.73832 * 12 10 9 39 39 H 1.07998 * 119.98998 * 0.02562 * 14 13 12 40 40 H 1.08000 * 119.87651 * 179.97438 * 15 14 13 41 41 H 1.08008 * 119.88836 * 179.74074 * 16 15 14 42 42 H 1.08001 * 120.01104 * 179.97438 * 17 16 15 43 43 H 0.96997 * 120.00445 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6939 -1.2018 5 7 2.3994 -1.2295 -2.1294 6 6 2.0400 -0.7211 1.2493 7 7 1.6514 0.0376 2.4456 8 6 2.3340 1.3376 2.4894 9 6 1.9124 -0.7355 3.6671 10 6 1.2830 -0.0394 4.8463 11 8 0.6762 0.9983 4.6849 12 7 1.3943 -0.5700 6.0802 13 6 0.7107 0.0091 7.1552 14 6 -0.4356 0.7563 6.9295 15 6 -1.1089 1.3279 7.9927 16 6 -0.6444 1.1571 9.2850 17 6 0.4956 0.4148 9.5216 18 6 1.1808 -0.1633 8.4595 19 16 2.6363 -1.1107 8.7568 20 6 2.6381 -1.1240 10.5188 21 1 1.9021 -0.5517 11.0638 22 6 3.5848 -1.8692 11.2056 23 7 4.4819 -2.5671 10.5413 24 14 3.5871 -1.8827 13.0737 25 1 2.2892 -2.4095 13.5665 26 1 4.6899 -2.7496 13.5610 27 1 3.7838 -0.5001 13.5783 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.1263 -0.7993 1.2057 32 1 1.6054 -1.7196 1.2952 33 1 3.4089 1.1807 2.5806 34 1 2.1239 1.8893 1.5731 35 1 1.9759 1.9074 3.3468 36 1 2.9881 -0.8149 3.8239 37 1 1.4857 -1.7331 3.5639 38 1 1.9482 -1.3534 6.2231 39 1 -0.8022 0.8917 5.9227 40 1 -2.0011 1.9097 7.8142 41 1 -1.1728 1.6098 10.1111 42 1 0.8552 0.2841 10.5316 43 1 5.1438 -3.0886 11.0217 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000505786367.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:36 Heat of formation + Delta-G solvation = 29.220748 kcal Electronic energy + Delta-G solvation = -25036.188895 eV Core-core repulsion = 21401.066618 eV Total energy + Delta-G solvation = -3635.122278 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.32225 -38.71559 -37.68079 -36.46643 -34.39870 -33.43791 -32.79079 -30.35075 -29.76302 -27.77709 -27.41785 -25.91866 -24.82926 -22.60393 -22.17900 -21.31211 -19.98467 -18.44487 -17.97225 -17.15007 -16.75263 -16.11808 -15.95287 -15.56910 -15.20068 -14.98965 -14.80493 -14.36074 -14.15497 -13.96827 -13.66441 -13.25246 -13.17502 -13.06753 -12.95546 -12.80084 -12.60323 -12.36963 -12.00846 -11.91315 -11.70758 -11.69481 -11.56832 -11.32428 -11.23566 -11.12047 -11.09415 -10.41843 -10.14069 -9.87016 -9.59808 -9.35806 -8.81825 -8.69927 -8.60921 -7.67037 -6.56745 -6.55577 -4.27743 1.83153 2.06796 2.36206 2.45547 2.85291 2.94697 3.08000 3.09318 3.13346 3.29991 3.55812 3.94539 3.98212 4.34062 4.44289 4.55996 4.69901 4.80146 4.86950 5.01832 5.03256 5.11884 5.19854 5.22270 5.38386 5.44193 5.53388 5.62840 5.63257 5.65582 5.87426 5.95856 6.00853 6.16935 6.20629 6.53783 6.56781 6.68608 6.83023 6.89301 7.09883 7.20557 7.22230 7.42051 7.66768 7.75592 8.09559 8.36575 8.92330 10.50803 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.017382 B = 0.002503 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.431610 B =11185.648517 C =12528.660729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.007 3.993 3 H 0.116 0.884 4 C 0.212 3.788 5 N -0.437 5.437 6 C 0.061 3.939 7 N -0.518 5.518 8 C 0.009 3.991 9 C 0.036 3.964 10 C 0.512 3.488 11 O -0.510 6.510 12 N -0.657 5.657 13 C 0.128 3.872 14 C -0.111 4.111 15 C -0.146 4.146 16 C -0.118 4.118 17 C -0.128 4.128 18 C -0.107 4.107 19 S 0.029 5.971 20 C -0.545 4.545 21 H 0.095 0.905 22 C 0.078 3.922 23 N -0.866 5.866 24 Si 0.924 3.076 25 H -0.270 1.270 26 H -0.281 1.281 27 H -0.270 1.270 28 H 0.093 0.907 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.046 0.954 32 H 0.087 0.913 33 H 0.025 0.975 34 H 0.071 0.929 35 H 0.095 0.905 36 H 0.071 0.929 37 H 0.109 0.891 38 H 0.411 0.589 39 H 0.138 0.862 40 H 0.112 0.888 41 H 0.110 0.890 42 H 0.138 0.862 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.086 4.327 -13.757 15.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.015 4.015 3 H 0.134 0.866 4 C -0.106 4.106 5 N -0.113 5.113 6 C -0.069 4.069 7 N -0.241 5.241 8 C -0.139 4.139 9 C -0.095 4.095 10 C 0.299 3.701 11 O -0.385 6.385 12 N -0.302 5.302 13 C 0.026 3.974 14 C -0.133 4.133 15 C -0.169 4.169 16 C -0.139 4.139 17 C -0.154 4.154 18 C -0.225 4.225 19 S 0.283 5.717 20 C -0.692 4.692 21 H 0.112 0.888 22 C -0.132 4.132 23 N -0.500 5.500 24 Si 0.749 3.251 25 H -0.195 1.195 26 H -0.206 1.206 27 H -0.195 1.195 28 H 0.111 0.889 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.106 0.894 33 H 0.044 0.956 34 H 0.089 0.911 35 H 0.113 0.887 36 H 0.089 0.911 37 H 0.127 0.873 38 H 0.248 0.752 39 H 0.156 0.844 40 H 0.130 0.870 41 H 0.128 0.872 42 H 0.155 0.845 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.233 3.525 -16.040 17.236 hybrid contribution 0.288 0.120 2.536 2.555 sum -4.944 3.645 -13.504 14.836 Atomic orbital electron populations 1.21750 0.90892 1.03266 1.03752 1.18883 0.98263 0.98998 0.85351 0.86626 1.29217 0.93152 0.93658 0.94603 1.81240 1.09086 1.09375 1.11602 1.22104 0.98819 0.97574 0.88377 1.61552 1.58707 1.03877 1.00009 1.22723 0.95681 0.90920 1.04551 1.21976 1.00387 0.98182 0.88964 1.20415 0.80962 0.85230 0.83503 1.90617 1.41044 1.22349 1.84524 1.43418 1.48266 1.31847 1.06683 1.17174 0.93794 1.01192 0.85285 1.21089 0.93518 0.98609 1.00074 1.20768 1.00702 1.02974 0.92500 1.20969 0.96921 0.99598 0.96439 1.21283 0.96010 0.98849 0.99270 1.22450 1.02457 1.03721 0.93843 1.83030 1.20184 1.58396 1.10076 1.23218 1.20479 1.35442 0.90073 0.88778 1.25081 0.94168 0.93637 1.00355 1.69975 1.15864 1.27405 1.36740 0.86112 0.78305 0.78697 0.81967 1.19471 1.20592 1.19476 0.88856 0.92376 0.92041 0.93591 0.89435 0.95628 0.91080 0.88681 0.91148 0.87288 0.75195 0.84432 0.87011 0.87154 0.84473 0.91621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.79 9.04 37.16 0.34 -0.45 16 2 C 0.01 0.04 2.69 -93.41 -0.25 -0.21 16 3 H 0.12 0.54 6.26 -51.93 -0.33 0.21 16 4 C 0.21 1.80 14.65 -20.76 -0.30 1.50 16 5 N -0.44 -5.06 18.54 42.15 0.78 -4.27 16 6 C 0.06 0.39 4.30 -3.83 -0.02 0.37 16 7 N -0.52 -4.39 3.95 -244.38 -0.97 -5.35 16 8 C 0.01 0.08 9.02 60.06 0.54 0.62 16 9 C 0.04 0.33 5.45 -4.98 -0.03 0.31 16 10 C 0.51 6.95 7.36 -10.99 -0.08 6.87 16 11 O -0.51 -8.12 11.48 5.55 0.06 -8.06 16 12 N -0.66 -10.16 5.17 -9.70 -0.05 -10.21 16 13 C 0.13 2.37 6.44 -83.44 -0.54 1.84 16 14 C -0.11 -1.96 8.71 -39.42 -0.34 -2.30 16 15 C -0.15 -2.42 10.04 -39.53 -0.40 -2.81 16 16 C -0.12 -2.06 10.03 -39.58 -0.40 -2.45 16 17 C -0.13 -2.60 9.26 -39.36 -0.36 -2.96 16 18 C -0.11 -2.26 6.12 -38.75 -0.24 -2.49 16 19 S 0.03 0.69 20.37 -107.50 -2.19 -1.50 16 20 C -0.55 -14.05 9.08 30.90 0.28 -13.77 16 21 H 0.09 2.33 4.81 -52.49 -0.25 2.08 16 22 C 0.08 2.01 5.49 -17.47 -0.10 1.91 16 23 N -0.87 -23.31 13.22 55.48 0.73 -22.58 16 24 Si 0.92 19.78 29.55 -169.99 -5.02 14.76 16 25 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 26 H -0.28 -5.92 7.11 56.52 0.40 -5.51 16 27 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 28 H 0.09 0.62 7.75 -51.93 -0.40 0.22 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.29 8.12 -51.93 -0.42 -0.14 16 32 H 0.09 0.51 7.93 -51.93 -0.41 0.10 16 33 H 0.03 0.21 8.14 -51.92 -0.42 -0.21 16 34 H 0.07 0.47 6.21 -51.93 -0.32 0.15 16 35 H 0.09 1.10 5.88 -51.93 -0.31 0.80 16 36 H 0.07 0.59 8.12 -51.93 -0.42 0.16 16 37 H 0.11 0.80 7.93 -51.93 -0.41 0.39 16 38 H 0.41 5.95 7.65 -40.82 -0.31 5.64 16 39 H 0.14 2.36 5.79 -52.49 -0.30 2.05 16 40 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 41 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 42 H 0.14 2.88 4.93 -52.49 -0.26 2.62 16 43 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 371.52 15.07 5.60 5.60 Total: -1.00 -30.65 371.52 -8.35 -39.00 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -5.40 Total: 6.68 kcal Atomic # 6 Polarization: -12.16 SS G_CDS: -1.89 Total: -14.06 kcal Atomic # 7 Polarization: -42.91 SS G_CDS: 0.50 Total: -42.42 kcal Atomic # 8 Polarization: -8.12 SS G_CDS: 0.06 Total: -8.06 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.76 kcal Atomic # 16 Polarization: 0.69 SS G_CDS: -2.19 Total: -1.50 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.65 -8.35 -39.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000505786367.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.221 kcal (2) G-P(sol) polarization free energy of solvation -30.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds