Wall clock time and date at job start Tue Mar 31 2020 18:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47039 * 2 1 4 4 C 1.47196 * 109.47500 * 239.99773 * 2 1 3 5 5 N 2.60799 * 109.47276 * 239.99853 * 2 1 3 6 6 C 1.52996 * 109.47247 * 119.99337 * 2 1 3 7 7 N 1.46897 * 109.47490 * 295.00262 * 6 2 1 8 8 C 1.46893 * 111.00171 * 293.95317 * 7 6 2 9 9 C 1.46898 * 111.00238 * 169.99571 * 7 6 2 10 10 C 1.50700 * 109.47297 * 189.99854 * 9 7 6 11 11 O 1.21291 * 119.99922 * 0.02562 * 10 9 7 12 12 N 1.34777 * 120.00078 * 180.02562 * 10 9 7 13 13 C 1.39938 * 120.00194 * 185.74301 * 12 10 9 14 14 C 1.38684 * 120.11224 * 24.75523 * 13 12 10 15 15 C 1.38220 * 120.01894 * 180.02562 * 14 13 12 16 16 C 1.38390 * 120.24981 * 359.95655 * 15 14 13 17 17 C 1.38085 * 120.23045 * 0.02562 * 16 15 14 18 18 C 1.38994 * 119.97692 * 0.02643 * 17 16 15 19 19 S 1.76195 * 120.12502 * 179.97438 * 18 17 16 20 20 C 1.76203 * 100.00020 * 5.61963 * 19 18 17 21 21 H 1.07993 * 119.99677 * 354.96047 * 20 19 18 22 22 C 1.38687 * 119.99706 * 174.96929 * 20 19 18 23 23 N 1.31646 * 120.00649 * 359.97438 * 22 20 19 24 24 Si 1.86808 * 119.99638 * 179.97438 * 22 20 19 25 25 H 1.48493 * 109.47176 * 59.99320 * 24 22 20 26 26 H 1.48497 * 109.47029 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.46619 * 299.99521 * 24 22 20 28 28 H 1.09007 * 109.47383 * 300.00390 * 1 2 3 29 29 H 1.08998 * 109.47396 * 60.00360 * 1 2 3 30 30 H 1.09000 * 109.47438 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47385 * 175.00007 * 6 2 1 32 32 H 1.09000 * 109.46744 * 55.00296 * 6 2 1 33 33 H 1.09007 * 109.47111 * 296.04758 * 8 7 6 34 34 H 1.08999 * 109.47382 * 56.04163 * 8 7 6 35 35 H 1.08997 * 109.47542 * 176.04381 * 8 7 6 36 36 H 1.08998 * 109.47032 * 70.00128 * 9 7 6 37 37 H 1.08997 * 109.47446 * 310.00225 * 9 7 6 38 38 H 0.97001 * 119.99879 * 5.73832 * 12 10 9 39 39 H 1.07998 * 119.98998 * 0.02562 * 14 13 12 40 40 H 1.08000 * 119.87651 * 179.97438 * 15 14 13 41 41 H 1.08008 * 119.88836 * 179.74074 * 16 15 14 42 42 H 1.08001 * 120.01104 * 179.97438 * 17 16 15 43 43 H 0.96997 * 120.00445 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6939 -1.2018 5 7 2.3994 -1.2295 -2.1294 6 6 2.0400 -0.7211 1.2493 7 7 1.6514 0.0376 2.4456 8 6 2.3340 1.3376 2.4894 9 6 1.9124 -0.7355 3.6671 10 6 1.2830 -0.0394 4.8463 11 8 0.6762 0.9983 4.6849 12 7 1.3943 -0.5700 6.0802 13 6 0.7107 0.0091 7.1552 14 6 -0.4356 0.7563 6.9295 15 6 -1.1089 1.3279 7.9927 16 6 -0.6444 1.1571 9.2850 17 6 0.4956 0.4148 9.5216 18 6 1.1808 -0.1633 8.4595 19 16 2.6363 -1.1107 8.7568 20 6 2.6381 -1.1240 10.5188 21 1 1.9021 -0.5517 11.0638 22 6 3.5848 -1.8692 11.2056 23 7 4.4819 -2.5671 10.5413 24 14 3.5871 -1.8827 13.0737 25 1 2.2892 -2.4095 13.5665 26 1 4.6899 -2.7496 13.5610 27 1 3.7838 -0.5001 13.5783 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.1263 -0.7993 1.2057 32 1 1.6054 -1.7196 1.2952 33 1 3.4089 1.1807 2.5806 34 1 2.1239 1.8893 1.5731 35 1 1.9759 1.9074 3.3468 36 1 2.9881 -0.8149 3.8239 37 1 1.4857 -1.7331 3.5639 38 1 1.9482 -1.3534 6.2231 39 1 -0.8022 0.8917 5.9227 40 1 -2.0011 1.9097 7.8142 41 1 -1.1728 1.6098 10.1111 42 1 0.8552 0.2841 10.5316 43 1 5.1438 -3.0886 11.0217 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000505786367.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:35 Heat of formation + Delta-G solvation = 10.882334 kcal Electronic energy + Delta-G solvation = -25036.984109 eV Core-core repulsion = 21401.066618 eV Total energy + Delta-G solvation = -3635.917491 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.47450 -39.63669 -38.76835 -37.27211 -35.66451 -34.70421 -34.07926 -31.83427 -30.94391 -28.72106 -28.00239 -27.82886 -25.50792 -23.92452 -23.44800 -22.16748 -21.12864 -20.09513 -18.67940 -18.25367 -18.09618 -17.49760 -16.99610 -16.79202 -16.32716 -15.94060 -15.86307 -15.43186 -15.21043 -15.11808 -14.76438 -14.57694 -14.46500 -14.03960 -13.88906 -13.72097 -13.68421 -13.33337 -13.06091 -12.96084 -12.87817 -12.77885 -12.63406 -12.49701 -12.46901 -12.10903 -12.05348 -11.63244 -11.57461 -11.36728 -11.30311 -10.62571 -10.53925 -10.31838 -9.30093 -9.07986 -8.47725 -8.30037 -6.21082 0.44193 0.58915 1.28641 1.41056 1.45835 1.59881 1.68641 1.72477 1.78910 2.08247 2.19868 2.77396 2.88877 3.04774 3.16795 3.32153 3.73375 3.83024 4.06469 4.14162 4.31389 4.32629 4.36068 4.42362 4.56779 4.61268 4.65725 4.73755 4.76147 4.82308 4.84333 5.08529 5.09443 5.15196 5.31444 5.37461 5.49101 5.52876 5.53203 5.70723 5.77809 5.88649 6.05534 6.14878 6.27158 6.55518 6.57490 6.98034 7.21795 8.60631 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.017382 B = 0.002503 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.431610 B =11185.648517 C =12528.660729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.014 3.986 3 H 0.134 0.866 4 C 0.241 3.759 5 N -0.493 5.493 6 C 0.062 3.938 7 N -0.523 5.523 8 C 0.010 3.990 9 C 0.041 3.959 10 C 0.512 3.488 11 O -0.532 6.532 12 N -0.662 5.662 13 C 0.132 3.868 14 C -0.121 4.121 15 C -0.129 4.129 16 C -0.120 4.120 17 C -0.144 4.144 18 C -0.132 4.132 19 S -0.012 6.012 20 C -0.564 4.564 21 H 0.096 0.904 22 C 0.027 3.973 23 N -0.901 5.901 24 Si 0.989 3.011 25 H -0.264 1.264 26 H -0.275 1.275 27 H -0.265 1.265 28 H 0.087 0.913 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.097 0.903 33 H 0.030 0.970 34 H 0.092 0.908 35 H 0.064 0.936 36 H 0.084 0.916 37 H 0.134 0.866 38 H 0.414 0.586 39 H 0.146 0.854 40 H 0.149 0.851 41 H 0.142 0.858 42 H 0.122 0.878 43 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.517 5.182 -14.262 16.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.007 4.007 3 H 0.152 0.848 4 C -0.077 4.077 5 N -0.170 5.170 6 C -0.066 4.066 7 N -0.247 5.247 8 C -0.138 4.138 9 C -0.089 4.089 10 C 0.301 3.699 11 O -0.408 6.408 12 N -0.307 5.307 13 C 0.030 3.970 14 C -0.143 4.143 15 C -0.152 4.152 16 C -0.141 4.141 17 C -0.169 4.169 18 C -0.248 4.248 19 S 0.238 5.762 20 C -0.711 4.711 21 H 0.113 0.887 22 C -0.179 4.179 23 N -0.537 5.537 24 Si 0.811 3.189 25 H -0.188 1.188 26 H -0.200 1.200 27 H -0.189 1.189 28 H 0.106 0.894 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.115 0.885 33 H 0.048 0.952 34 H 0.110 0.890 35 H 0.083 0.917 36 H 0.102 0.898 37 H 0.151 0.849 38 H 0.252 0.748 39 H 0.163 0.837 40 H 0.167 0.833 41 H 0.159 0.841 42 H 0.140 0.860 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.703 4.405 -16.586 18.423 hybrid contribution 0.567 -0.006 2.569 2.631 sum -6.136 4.399 -14.016 15.920 Atomic orbital electron populations 1.21711 0.90504 1.03288 1.03762 1.18983 0.98352 0.99460 0.83939 0.84848 1.29564 0.91605 0.92301 0.94185 1.81275 1.10999 1.11261 1.13429 1.22124 0.99368 0.97743 0.87406 1.61513 1.59027 1.03927 1.00221 1.22671 0.95793 0.91009 1.04289 1.22003 1.00826 0.98644 0.87454 1.21204 0.80217 0.84870 0.83652 1.90601 1.42061 1.23402 1.84779 1.43571 1.48300 1.32014 1.06790 1.17390 0.93904 1.00411 0.85315 1.21327 0.93303 0.98706 1.00926 1.21239 1.00977 1.01283 0.91654 1.21260 0.95941 0.98886 0.97992 1.21356 0.97301 0.99798 0.98488 1.22411 1.02163 1.04970 0.95294 1.82852 1.23233 1.60738 1.09345 1.23581 1.20636 1.35470 0.91406 0.88656 1.25979 0.93755 0.93254 1.04908 1.70081 1.16717 1.28467 1.38389 0.85126 0.78521 0.78857 0.76427 1.18820 1.19997 1.18929 0.89435 0.91718 0.92082 0.92916 0.88478 0.95189 0.88964 0.91716 0.89844 0.84861 0.74838 0.83670 0.83329 0.84059 0.86000 0.91517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.21 9.04 71.98 0.65 -0.56 16 2 C 0.01 0.13 2.69 -12.60 -0.03 0.10 16 3 H 0.13 0.81 6.26 -2.38 -0.01 0.79 16 4 C 0.24 3.66 14.65 89.44 1.31 4.97 16 5 N -0.49 -10.97 18.54 20.00 0.37 -10.60 16 6 C 0.06 0.63 4.30 86.30 0.37 1.00 16 7 N -0.52 -7.63 3.95 -927.09 -3.67 -11.29 16 8 C 0.01 0.16 9.02 127.69 1.15 1.31 16 9 C 0.04 0.69 5.45 85.56 0.47 1.15 16 10 C 0.51 13.34 7.36 87.66 0.64 13.98 16 11 O -0.53 -16.37 11.48 -3.06 -0.04 -16.41 16 12 N -0.66 -20.26 5.17 -303.00 -1.57 -21.83 16 13 C 0.13 4.87 6.44 38.31 0.25 5.12 16 14 C -0.12 -4.05 8.71 22.37 0.19 -3.86 16 15 C -0.13 -3.90 10.04 22.30 0.22 -3.68 16 16 C -0.12 -3.93 10.03 22.27 0.22 -3.71 16 17 C -0.14 -5.85 9.26 22.41 0.21 -5.64 16 18 C -0.13 -5.62 6.12 22.81 0.14 -5.48 16 19 S -0.01 -0.61 20.37 -56.49 -1.15 -1.76 16 20 C -0.56 -29.94 9.08 67.93 0.62 -29.32 16 21 H 0.10 4.87 4.81 -2.91 -0.01 4.86 16 22 C 0.03 1.43 5.49 84.83 0.47 1.90 16 23 N -0.90 -49.77 13.22 21.63 0.29 -49.49 16 24 Si 0.99 40.96 29.55 68.60 2.03 42.99 16 25 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 26 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 27 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 28 H 0.09 0.96 7.75 -2.38 -0.02 0.94 16 29 H 0.06 0.51 8.14 -2.39 -0.02 0.50 16 30 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.05 0.50 8.12 -2.39 -0.02 0.48 16 32 H 0.10 0.83 7.93 -2.39 -0.02 0.81 16 33 H 0.03 0.43 8.14 -2.38 -0.02 0.41 16 34 H 0.09 0.99 6.21 -2.39 -0.01 0.98 16 35 H 0.06 1.44 5.88 -2.39 -0.01 1.43 16 36 H 0.08 1.22 8.12 -2.39 -0.02 1.20 16 37 H 0.13 1.59 7.93 -2.39 -0.02 1.57 16 38 H 0.41 12.11 7.65 -92.71 -0.71 11.40 16 39 H 0.15 4.69 5.79 -2.91 -0.02 4.68 16 40 H 0.15 3.42 8.06 -2.91 -0.02 3.40 16 41 H 0.14 3.69 8.06 -2.91 -0.02 3.67 16 42 H 0.12 5.25 4.93 -2.91 -0.01 5.24 16 43 H 0.28 14.22 8.31 -92.71 -0.77 13.45 16 Total: -1.00 -68.32 371.52 3.50 -64.82 By element: Atomic # 1 Polarization: 25.94 SS G_CDS: 0.35 Total: 26.29 kcal Atomic # 6 Polarization: -29.61 SS G_CDS: 6.88 Total: -22.73 kcal Atomic # 7 Polarization: -88.64 SS G_CDS: -4.57 Total: -93.21 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: -0.04 Total: -16.41 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 2.03 Total: 42.99 kcal Atomic # 16 Polarization: -0.61 SS G_CDS: -1.15 Total: -1.76 kcal Total: -68.32 3.50 -64.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000505786367.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.702 kcal (2) G-P(sol) polarization free energy of solvation -68.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds